mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 70,434 | C→T | 42.7% | N16N (AAC→AAT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,581 | C→T | 29.3% | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,740 | T→G | 32.9% | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,079 | C→T | 29.9% | R231R (CGC→CGT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,082 | T→C | 30.6% | I232I (ATT→ATC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,085 | T→C | 28.2% | S233S (AGT→AGC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,109 | T→C | 33.3% | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,175 | A→G | 34.8% | R263R (CGA→CGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,214 | T→C | 29.9% | F276F (TTT→TTC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 155,463 | A→T | 100% | *247K (TAA→AAA) | ecpD ← | predicted periplasmic pilin chaperone |
| RA | 236,101 | A→C | 36.3% | D12A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 236,107 | A→C | 37.3% | E14A (GAA→GCA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 470,764 | C→A | 6.0% | T302N (ACC→AAC) | mdlB → | fused predicted multidrug transporter subunits and ATP binding components of ABC superfamily |
| RA | 547,694 | A→G | 100% | pseudogene (114/261 nt) pseudogene (114/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 547,831:1 | +G | 100% | pseudogene (251/261 nt) pseudogene (251/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| MC JC | 654,214 | Δ1,199 bp | 100% | [dcuC]–[dcuC] | [dcuC], insH, [dcuC] | |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | predicted diguanylate cyclase |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,303,631 | C→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,303,633 | G→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 2,162,829 | C→T | 5.3% | I769I (ATC→ATT) | mdtC → | multidrug efflux system, subunit C |
| RA | 2,162,830 | A→G | 5.5% | N770D (AAT→GAT) | mdtC → | multidrug efflux system, subunit C |
| MC JC | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| RA | 2,236,631 | T→A | 5.6% | D140E (GAT→GAA) | sanA → | hypothetical protein |
| RA | 2,236,632 | T→A | 5.6% | F141I (TTC→ATC) | sanA → | hypothetical protein |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | insD–[rcsC] | insD, insC, [rcsC] | |
| RA | 2,809,581 | G→A | 45.0% | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator |
| RA | 2,866,110 | T→A | 100% | intergenic (‑20/+160) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein |
| RA | 3,249,944 | C→A | 9.9% | P89T (CCG→ACG) | yqjG → | predicted S‑transferase |
| RA | 3,627,679 | C→A | 5.1% | P20T (CCA→ACA) | rhtB → | neutral amino‑acid efflux system |
| RA | 3,684,513 | G→A | 100% | pseudogene (546/582 nt) pseudogene (1609/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,624 | C→A | 100% | pseudogene (435/582 nt) pseudogene (1498/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,643 | T→G | 100% | pseudogene (416/582 nt) pseudogene (1479/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,687 | A→G | 100% | pseudogene (372/582 nt) pseudogene (1435/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,705 | G→A | 100% | pseudogene (354/582 nt) pseudogene (1417/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,717 | A→G | 100% | pseudogene (342/582 nt) pseudogene (1405/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,858 | A→G | 100% | pseudogene (201/582 nt) pseudogene (1264/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,870 | C→T | 100% | pseudogene (189/582 nt) pseudogene (1252/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,885 | T→C | 100% | pseudogene (174/582 nt) pseudogene (1237/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,921 | A→G | 100% | pseudogene (138/582 nt) pseudogene (1201/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,927 | A→G | 100% | pseudogene (132/582 nt) pseudogene (1195/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,685,038 | C→T | 100% | pseudogene (21/582 nt) pseudogene (1084/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,685,100 | A→C | 100% | pseudogene (1022/1645 nt) | ilvG ← | ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,685,129 | T→A | 100% | pseudogene (993/1645 nt) | ilvG ← | ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,685,143:1 | +A | 87.7% | pseudogene (979/1645 nt) pseudogene (979/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,143:2 | +T | 87.7% | pseudogene (979/1645 nt) pseudogene (979/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,267 | C→T | 100% | pseudogene (855/1645 nt) pseudogene (855/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,312 | G→A | 100% | pseudogene (810/1645 nt) pseudogene (810/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,329 | G→A | 100% | pseudogene (793/1645 nt) pseudogene (793/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,333 | A→G | 100% | pseudogene (789/1645 nt) pseudogene (789/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,354 | T→C | 100% | pseudogene (768/1645 nt) pseudogene (768/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,369 | G→A | 100% | pseudogene (753/1645 nt) pseudogene (753/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,375 | C→T | 100% | pseudogene (747/1645 nt) pseudogene (747/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| MC JC | 3,742,936 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| MC JC | 3,746,911 | Δ1,199 bp | 100% | [tnaB]–[tnaB] | [tnaB], insH, [tnaB] | |
| RA | 3,824,278 | T→C | 100% | pseudogene (413/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,324 | T→C | 100% | pseudogene (459/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,360 | A→T | 100% | pseudogene (495/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,366 | G→A | 100% | pseudogene (501/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,372 | C→T | 100% | pseudogene (507/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,378 | 2 bp→AA | 100% | pseudogene (513‑514/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,408 | T→A | 100% | pseudogene (543/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,512 | T→C | 100% | pseudogene (647/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,522 | T→G | 100% | pseudogene (657/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,531:1 | +G | 100% | pseudogene (666/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,781 | T→C | 100% | D45D (GAT→GAC) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,814 | G→A | 100% | A56A (GCG→GCA) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,826 | C→T | 100% | S60S (TCC→TCT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,880 | C→G | 100% | A78A (GCC→GCG) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,886 | A→T | 100% | T80T (ACA→ACT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,892 | T→C | 100% | A82A (GCT→GCC) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,898 | A→G | 100% | A84A (GCA→GCG) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,913 | C→T | 100% | H89H (CAC→CAT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,919 | G→T | 100% | L91L (CTG→CTT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,949 | A→G | 100% | E101E (GAA→GAG) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,051 | G→A | 100% | E135E (GAG→GAA) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,072 | C→T | 100% | A142A (GCC→GCT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,096 | G→A | 100% | V150V (GTG→GTA) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,108 | C→T | 100% | L154L (CTC→CTT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,123 | C→G | 100% | R159R (CGC→CGG) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,204 | C→T | 100% | D186D (GAC→GAT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,213 | T→C | 100% | A189A (GCT→GCC) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,216 | C→T | 100% | Y190Y (TAC→TAT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,866,193 | T→C | 5.6% | intergenic (‑202/+28) | mtlD ← / ← mtlA | mannitol‑1‑phosphate dehydrogenase, NAD(P)‑binding/fused mannitol‑specific PTS enzyme IIABC components |
| RA | 3,866,200 | T→C | 5.5% | intergenic (‑209/+21) | mtlD ← / ← mtlA | mannitol‑1‑phosphate dehydrogenase, NAD(P)‑binding/fused mannitol‑specific PTS enzyme IIABC components |
| RA | 3,866,201 | G→A | 5.5% | intergenic (‑210/+20) | mtlD ← / ← mtlA | mannitol‑1‑phosphate dehydrogenase, NAD(P)‑binding/fused mannitol‑specific PTS enzyme IIABC components |
| RA | 3,920,280 | A→T | 8.7% | D29E (GAT→GAA) | cspA ← | major cold shock protein |
| RA | 3,982,812 | A→T | 7.2% | intergenic (‑763/+36) | gadE ← / ← hdeD | DNA‑binding transcriptional activator/acid‑resistance membrane protein |
| RA | 3,982,814 | C→G | 6.9% | intergenic (‑765/+34) | gadE ← / ← hdeD | DNA‑binding transcriptional activator/acid‑resistance membrane protein |
| RA | 3,982,816 | A→T | 6.8% | intergenic (‑767/+32) | gadE ← / ← hdeD | DNA‑binding transcriptional activator/acid‑resistance membrane protein |
| MC JC | 4,310,363 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| RA | 4,371,271 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,563,587 | T→A | 100% | K207M (AAG→ATG) | iadA ← | isoaspartyl dipeptidase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AP009048 | 573861–575008 | 575999 | 992–2139 | 17 [14] | [0] 160 | insH–[nmpC] | insH,[nmpC] |
| * | * | ÷ | AP009048 | 907977 | 908013 | 37 | 15 [14] | [14] 15 | ybjT | conserved hypothetical protein with NAD(P)‑binding Rossmann‑fold domain |
| * | * | ÷ | AP009048 | 1371181 | 1371239 | 59 | 15 [12] | [14] 17 | pspD | peripheral inner membrane phage‑shock protein |
| * | * | ÷ | AP009048 | 4213625–4216710 | 4216710 | 1–3086 | 15 [14] | [11] 15 | rrlE–[rrfE] | rrlE,[rrfE] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 7063 | 64 (1.090) | 18 (0.330) +GATT |
11/94 | NT | 35.2% | coding (897/1431 nt) | yaaJ | predicted transporter |
| ? | AP009048 | = 2564144 | 8 (0.140) | coding (1397/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase | |||||
| * | ? | AP009048 | = 20030 | NA (NA) | 3 (0.060) | 3/92 | NT | NA | coding (285/504 nt) | insB | IS1 transposase InsAB' |
| ? | AP009048 | = 20039 | NA (NA) | coding (276/504 nt) | insB | IS1 transposase InsAB' | |||||
| * | ? | AP009048 | = 24616 | 63 (1.080) | 3 (0.060) | 3/94 | NT | 5.4% | coding (2226/2817 nt) | ileS | isoleucyl‑tRNA synthetase |
| ? | AP009048 | = 24637 | 48 (0.890) | coding (2247/2817 nt) | ileS | isoleucyl‑tRNA synthetase | |||||
| * | ? | AP009048 | 70061 = | 64 (1.090) | 29 (0.630) +CGCGTACAACT |
23/80 | NT | 35.4% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | AP009048 | 236044 = | 71 (1.210) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
| * | ? | AP009048 | = 71265 | 77 (1.320) | 11 (0.260) +AGGGTCCCTAAGTC |
11/74 | NT | 24.0% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | AP009048 | 3464879 = | 19 (0.320) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
| * | ? | AP009048 | 113675 = | 45 (0.770) | 3 (0.060) | 3/94 | NT | 6.5% | coding (232/1044 nt) | guaC | GMP reductase |
| ? | AP009048 | 113695 = | 45 (0.830) | coding (252/1044 nt) | guaC | GMP reductase | |||||
| * | ? | AP009048 | = 169383 | 46 (0.790) | 3 (0.060) | 3/94 | NT | 5.7% | coding (1900/2244 nt) | fhuA | ferrichrome outer membrane transporter |
| ? | AP009048 | = 169404 | 56 (1.040) | coding (1921/2244 nt) | fhuA | ferrichrome outer membrane transporter | |||||
| * | ? | AP009048 | 188790 = | 48 (0.820) | 3 (0.060) | 3/88 | NT | 6.9% | coding (717/795 nt) | map | methionine aminopeptidase |
| ? | AP009048 | 188813 = | 39 (0.770) | coding (694/795 nt) | map | methionine aminopeptidase | |||||
| * | ? | AP009048 | = 224374 | NA (NA) | 4 (0.080) | 3/88 | NT | NA | noncoding (604/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | = 224403 | NA (NA) | noncoding (633/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | 224551 = | NA (NA) | 4 (0.070) | 4/100 | NT | NA | noncoding (781/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 224572 = | NA (NA) | noncoding (802/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | 224572 = | NA (NA) | 3 (0.060) | 3/94 | NT | NA | noncoding (802/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 224598 = | NA (NA) | noncoding (828/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | = 225084 | NA (NA) | 5 (0.100) | 5/88 | NT | NA | noncoding (1314/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | = 225092 | NA (NA) | noncoding (1322/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | 225092 = | NA (NA) | 5 (0.090) | 4/96 | NT | NA | noncoding (1322/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 225114 = | NA (NA) | noncoding (1344/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | = 225126 | NA (NA) | 6 (0.110) | 4/92 | NT | NA | noncoding (1356/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | = 225135 | NA (NA) | noncoding (1365/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | = 225281 | NA (NA) | 3 (0.060) | 3/92 | NT | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | 225392 = | NA (NA) | 3 (0.060) | 3/92 | NT | NA | noncoding (12/77 nt) | ileV | tRNA‑Ile |
| ? | AP009048 | 225417 = | NA (NA) | noncoding (37/77 nt) | ileV | tRNA‑Ile | |||||
| * | ? | AP009048 | 225408 = | NA (NA) | 3 (0.060) | 3/92 | NT | NA | noncoding (28/77 nt) | ileV | tRNA‑Ile |
| ? | AP009048 | 225425 = | NA (NA) | noncoding (45/77 nt) | ileV | tRNA‑Ile | |||||
| * | ? | AP009048 | = 225820 | NA (NA) | 9 (0.160) | 7/96 | NT | NA | noncoding (62/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | = 225831 | NA (NA) | noncoding (73/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 225889 = | NA (NA) | 4 (0.080) | 4/88 | NT | NA | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 225907 = | NA (NA) | noncoding (149/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 226398 = | NA (NA) | 6 (0.120) | 6/90 | NT | NA | noncoding (640/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 226415 = | NA (NA) | noncoding (657/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | = 226560 | NA (NA) | 3 (0.060) | 3/90 | NT | NA | noncoding (802/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | = 226568 | NA (NA) | noncoding (810/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | = 227075 | NA (NA) | 6 (0.110) | 4/94 | NT | NA | noncoding (1317/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | = 227092 | NA (NA) | noncoding (1334/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 227143 = | NA (NA) | 3 (0.060) | 3/92 | NT | NA | noncoding (1385/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 227161 = | NA (NA) | noncoding (1403/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 228016 = | NA (NA) | 4 (0.080) | 3/88 | NT | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 228057 = | NA (NA) | 7 (0.130) | 6/92 | NT | NA | noncoding (2299/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 228076 = | NA (NA) | noncoding (2318/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | = 236798 | 57 (0.970) | 24 (0.870) +27 bp |
20/48 | NT | 44.7% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | AP009048 | 4124502 = | 69 (1.180) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
| * | ? | AP009048 | 270848 = | NA (NA) | 5 (0.090) | 4/92 | NT | NA | coding (1022/1152 nt) | insI | IS30 transposase |
| ? | AP009048 | 270875 = | NA (NA) | coding (1049/1152 nt) | insI | IS30 transposase | |||||
| * | ? | AP009048 | = 274373 | NA (NA) | 73 (1.250) | 36/102 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | AP009048 | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
| * | ? | AP009048 | = 296831 | 58 (0.990) | 4 (0.080) | 4/88 | NT | 7.3% | coding (185/411 nt) | yagP | predicted transcriptional regulator |
| ? | AP009048 | = 296842 | 52 (1.030) | coding (174/411 nt) | yagP | predicted transcriptional regulator | |||||
| * | ? | AP009048 | = 309393 | 84 (1.430) | 5 (0.090) | 3/100 | NT | 5.5% | coding (503/588 nt) | yagZ | conserved hypothetical protein |
| ? | AP009048 | = 309413 | 91 (1.590) | coding (483/588 nt) | yagZ | conserved hypothetical protein | |||||
| * | ? | AP009048 | = 314812 | NA (NA) | 4 (0.070) | 3/96 | NT | NA | coding (307/309 nt) coding (2/867 nt) |
insE insF |
IS3 element protein IS3 element protein InsF |
| ? | AP009048 | = 314825 | NA (NA) | coding (15/867 nt) | insF | IS3 element protein InsF | |||||
| * | ? | AP009048 | 315215 = | NA (NA) | 5 (0.090) | 5/94 | NT | NA | coding (405/867 nt) | insF | IS3 element protein InsF |
| ? | AP009048 | 315238 = | NA (NA) | coding (428/867 nt) | insF | IS3 element protein InsF | |||||
| * | ? | AP009048 | 315417 = | NA (NA) | 6 (0.120) | 5/84 | NT | NA | coding (607/867 nt) | insF | IS3 element protein InsF |
| ? | AP009048 | 315454 = | NA (NA) | coding (644/867 nt) | insF | IS3 element protein InsF | |||||
| * | ? | AP009048 | = 315707 | NA (NA) | 70 (1.200) | 47/102 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | AP009048 | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | AP009048 | = 380893 | NA (NA) | 3 (0.060) | 3/88 | NT | NA | coding (364/411 nt) | insC | IS2 insertion element repressor InsA |
| ? | AP009048 | = 380919 | NA (NA) | coding (390/411 nt) coding (22/906 nt) |
insC insD |
IS2 insertion element repressor InsA IS2 insertion element transposase InsAB' |
|||||
| * | ? | AP009048 | 381056 = | NA (NA) | 5 (0.100) | 5/90 | NT | NA | coding (159/906 nt) | insD | IS2 insertion element transposase InsAB' |
| ? | AP009048 | 381083 = | NA (NA) | coding (186/906 nt) | insD | IS2 insertion element transposase InsAB' | |||||
| * | ? | AP009048 | = 381061 | NA (NA) | 5 (0.100) | 3/90 | NT | NA | coding (164/906 nt) | insD | IS2 insertion element transposase InsAB' |
| ? | AP009048 | = 381076 | NA (NA) | coding (179/906 nt) | insD | IS2 insertion element transposase InsAB' | |||||
| * | ? | AP009048 | 381461 = | NA (NA) | 4 (0.080) | 3/90 | NT | NA | coding (564/906 nt) | insD | IS2 insertion element transposase InsAB' |
| ? | AP009048 | 381491 = | NA (NA) | coding (594/906 nt) | insD | IS2 insertion element transposase InsAB' | |||||
| * | ? | AP009048 | 525265 = | NA (NA) | 3 (0.050) | 3/100 | NT | 100% | coding (2781/4281 nt) | rhsD | rhsD element protein |
| ? | AP009048 | 525295 = | 0 (0.000) | coding (2811/4281 nt) | rhsD | rhsD element protein | |||||
| * | ? | AP009048 | 566000 = | NA (NA) | 82 (1.400) | 53/102 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | AP009048 | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | AP009048 | = 637964 | 76 (1.300) | 4 (0.080) | 3/92 | NT | 5.7% | intergenic (‑168/‑204) | dsbG/ahpC | periplasmic disulfide isomerase/thiol‑disulphide oxidase/alkyl hydroperoxide reductase, C22 subunit |
| ? | AP009048 | = 637979 | 64 (1.210) | intergenic (‑183/‑189) | dsbG/ahpC | periplasmic disulfide isomerase/thiol‑disulphide oxidase/alkyl hydroperoxide reductase, C22 subunit | |||||
| * | ? | AP009048 | 713380 = | 48 (0.820) | 29 (0.540) | 24/94 | NT | 39.9% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | AP009048 | = 4125338 | 43 (0.800) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | AP009048 | = 713954 | 72 (1.230) | 50 (0.850) | 40/102 | NT | 42.2% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | AP009048 | 2809398 = | 65 (1.110) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
| * | ? | AP009048 | = 900889 | 48 (0.820) | 4 (0.080) | 3/88 | NT | 7.8% | coding (109/732 nt) | artJ | arginine transporter subunit |
| ? | AP009048 | = 900904 | 53 (1.050) | coding (94/732 nt) | artJ | arginine transporter subunit | |||||
| * | ? | AP009048 | 949148 = | 50 (0.850) | 3 (0.050) | 3/96 | NT | 7.0% | coding (843/909 nt) | ycaN | predicted DNA‑binding transcriptional regulator |
| ? | AP009048 | 949177 = | 33 (0.600) | coding (814/909 nt) | ycaN | predicted DNA‑binding transcriptional regulator | |||||
| * | ? | AP009048 | = 962405 | 59 (1.010) | 3 (0.050) | 3/102 | NT | 5.2% | intergenic (+99/‑12) | cmk/rpsA | cytidylate kinase/30S ribosomal subunit protein S1 |
| ? | AP009048 | = 962430 | 50 (0.850) | coding (14/1674 nt) | rpsA | 30S ribosomal subunit protein S1 | |||||
| * | ? | AP009048 | = 975192 | 31 (0.530) | 4 (0.080) | 3/90 | NT | 10.6% | coding (452/1323 nt) | mukF | Involved in chromosome partioning, Ca2+ binding protein |
| ? | AP009048 | = 975218 | 40 (0.770) | coding (478/1323 nt) | mukF | Involved in chromosome partioning, Ca2+ binding protein | |||||
| * | ? | AP009048 | = 1044511 | 44 (0.750) | 3 (0.060) | 3/82 | NT | 6.9% | coding (122/2181 nt) | yccC | cryptic autophosphorylating protein tyrosine kinase Etk |
| ? | AP009048 | = 1044520 | 46 (0.980) | coding (113/2181 nt) | yccC | cryptic autophosphorylating protein tyrosine kinase Etk | |||||
| * | ? | AP009048 | 1209367 = | 12 (0.200) | 26 (0.650) | 21/70 | NT | 71.0% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | AP009048 | 1211196 = | 13 (0.320) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | AP009048 | = 1209382 | 12 (0.200) | 15 (0.370) | 12/70 | NT | 58.6% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | AP009048 | = 1211179 | 13 (0.320) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | AP009048 | 1383523 = | 33 (0.560) | 3 (0.060) | 3/90 | NT | 8.6% | coding (21/114 nt) | ymjB | hypothetical protein |
| ? | AP009048 | 1383562 = | 35 (0.680) | coding (60/114 nt) | ymjB | hypothetical protein | |||||
| * | ? | AP009048 | = 1432252 | 44 (0.750) | 3 (0.060) | 3/90 | NT | 7.4% | coding (1490/3363 nt) | stfR | predicted tail fiber protein |
| ? | AP009048 | = 1432258 | 36 (0.700) | coding (1496/3363 nt) | stfR | predicted tail fiber protein | |||||
| * | ? | AP009048 | = 1518768 | 35 (0.600) | 3 (0.070) | 3/76 | NT | 8.8% | intergenic (+52/‑335) | ydcW/ydcX | medium chain aldehyde dehydrogenase/predicted inner membrane protein |
| ? | AP009048 | = 1518777 | 36 (0.830) | intergenic (+61/‑326) | ydcW/ydcX | medium chain aldehyde dehydrogenase/predicted inner membrane protein | |||||
| * | ? | AP009048 | 1557684 = | 54 (0.920) | 3 (0.060) | 3/94 | NT | 5.6% | intergenic (‑7/+95) | sra/bdm | 30S ribosomal subunit protein S22/biofilm‑dependent modulation protein |
| ? | AP009048 | 1557712 = | 52 (0.960) | intergenic (‑35/+67) | sra/bdm | 30S ribosomal subunit protein S22/biofilm‑dependent modulation protein | |||||
| * | ? | AP009048 | 1561483 = | 64 (1.090) | 3 (0.060) | 3/88 | NT | 5.5% | coding (142/897 nt) | ddpC | D‑Ala‑D‑Ala transporter subunit |
| ? | AP009048 | 1561513 = | 48 (0.950) | coding (112/897 nt) | ddpC | D‑Ala‑D‑Ala transporter subunit | |||||
| * | ? | AP009048 | = 1632877 | 52 (0.890) | 3 (0.060) | 3/94 | NT | 6.3% | coding (1123/1284 nt) | ydfJ | predicted transporter |
| ? | AP009048 | = 1632888 | 42 (0.780) | coding (1112/1284 nt) | ydfJ | predicted transporter | |||||
| * | ? | AP009048 | 1675834 = | 64 (1.090) | 3 (0.060) | 3/90 | NT | 5.2% | coding (208/1035 nt) | ydgG | predicted inner membrane protein |
| ? | AP009048 | 1675857 = | 53 (1.030) | coding (231/1035 nt) | ydgG | predicted inner membrane protein | |||||
| * | ? | AP009048 | = 1720804 | 47 (0.800) | 4 (0.080) | 3/88 | NT | 8.6% | coding (513/1110 nt) | ydhH | conserved hypothetical protein |
| ? | AP009048 | = 1720808 | 45 (0.890) | coding (509/1110 nt) | ydhH | conserved hypothetical protein | |||||
| * | ? | AP009048 | 1736969 = | 61 (1.040) | 3 (0.070) | 3/80 | NT | 6.5% | intergenic (+5/‑123) | ydhO/sodB | predicted lipoprotein/superoxide dismutase, Fe |
| ? | AP009048 | 1736997 = | 38 (0.830) | intergenic (+33/‑95) | ydhO/sodB | predicted lipoprotein/superoxide dismutase, Fe | |||||
| * | ? | AP009048 | = 1938044 | 41 (0.700) | 4 (0.080) | 3/88 | NT | 10.2% | intergenic (‑16/‑322) | zwf/yebK | glucose‑6‑phosphate dehydrogenase/predicted DNA‑binding transcriptional regulator |
| ? | AP009048 | = 1938057 | 35 (0.690) | intergenic (‑29/‑309) | zwf/yebK | glucose‑6‑phosphate dehydrogenase/predicted DNA‑binding transcriptional regulator | |||||
| * | ? | AP009048 | 1990175 = | 57 (0.970) | 3 (0.060) | 3/82 | NT | 6.5% | intergenic (‑280/‑184) | yecJ/yecR | hypothetical protein/hypothetical protein |
| ? | AP009048 | 1990199 = | 41 (0.870) | intergenic (‑304/‑160) | yecJ/yecR | hypothetical protein/hypothetical protein | |||||
| * | ? | AP009048 | 2018571 = | 7 (0.120) | 40 (0.730) | 28/96 | NT | 85.9% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | AP009048 | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
| * | ? | AP009048 | = 2018583 | 3 (0.050) | 47 (0.840) | 33/98 | NT | 94.2% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | AP009048 | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
| * | ? | AP009048 | = 2033398 | 44 (0.750) | 3 (0.060) | 3/92 | NT | 7.2% | coding (1057/1419 nt) | dcm | DNA cytosine methylase |
| ? | AP009048 | = 2033414 | 38 (0.720) | coding (1041/1419 nt) | dcm | DNA cytosine methylase | |||||
| * | ? | AP009048 | 2172308 = | NA (NA) | 73 (1.270) | 48/100 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | AP009048 | = 3920279 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
| * | ? | AP009048 | 2172309 = | NA (NA) | 69 (1.230) | 43/98 | NT | 100% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | AP009048 | 3932928 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | AP009048 | = 2173564 | NA (NA) | 89 (1.550) | 47/100 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | AP009048 | 3920276 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
| * | ? | AP009048 | = 2173565 | NA (NA) | 48 (0.820) | 35/102 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | AP009048 | = 3932931 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | AP009048 | = 2214850 | 49 (0.840) | 3 (0.050) | 3/96 | NT | 5.7% | coding (292/462 nt) | yehR | conserved hypothetical protein |
| ? | AP009048 | = 2214884 | 53 (0.960) | coding (326/462 nt) | yehR | conserved hypothetical protein | |||||
| * | ? | AP009048 | 2273890 = | 47 (0.800) | 4 (0.070) | 3/94 | NT | 7.5% | intergenic (+11/‑170) | spr/rtn | predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein |
| ? | AP009048 | 2273912 = | 55 (1.020) | intergenic (+33/‑148) | spr/rtn | predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein | |||||
| * | ? | AP009048 | 2352398 = | 39 (0.670) | 4 (0.070) | 4/98 | NT | 8.0% | coding (345/1131 nt) | nrdB | ribonucleoside diphosphate reductase 1, beta subunit, ferritin‑like |
| ? | AP009048 | 2352421 = | 54 (0.960) | coding (368/1131 nt) | nrdB | ribonucleoside diphosphate reductase 1, beta subunit, ferritin‑like | |||||
| * | ? | AP009048 | = 2412225 | NA (NA) | 71 (1.210) | 43/102 | NT | 88.8% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | AP009048 | = 3748805 | 9 (0.150) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | AP009048 | 2423050 = | 28 (0.480) | 3 (0.060) | 3/90 | NT | 9.1% | coding (524/1521 nt) | yfcC | predicted inner membrane protein |
| ? | AP009048 | 2423074 = | 35 (0.680) | coding (548/1521 nt) | yfcC | predicted inner membrane protein | |||||
| * | ? | AP009048 | 2461138 = | 56 (0.960) | 4 (0.080) | 3/90 | NT | 8.3% | intergenic (‑46/+635) | yfcV/sixA | predicted fimbrial‑like adhesin protein/phosphohistidine phosphatase |
| ? | AP009048 | 2461164 = | 39 (0.750) | intergenic (‑72/+609) | yfcV/sixA | predicted fimbrial‑like adhesin protein/phosphohistidine phosphatase | |||||
| * | ? | AP009048 | = 2560691 | 46 (0.790) | 4 (0.070) | 3/96 | NT | 7.8% | coding (484/501 nt) | yffI | predicted carboxysome structural protein with predicted role in ethanolamine utilization |
| ? | AP009048 | = 2560710 | 51 (0.930) | coding (465/501 nt) | yffI | predicted carboxysome structural protein with predicted role in ethanolamine utilization | |||||
| * | ? | AP009048 | = 2629540 | 24 (0.410) | 3 (0.060) | 3/90 | NT | 11.5% | intergenic (+19/+74) | yfgI/guaA | conserved hypothetical protein/GMP synthetase |
| ? | AP009048 | = 2629551 | 25 (0.480) | intergenic (+30/+63) | yfgI/guaA | conserved hypothetical protein/GMP synthetase | |||||
| * | ? | AP009048 | 2727225 = | NA (NA) | 5 (0.090) | 3/92 | NT | NA | noncoding (616/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | AP009048 | 2727251 = | NA (NA) | noncoding (590/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 2727295 = | NA (NA) | 4 (0.070) | 3/94 | NT | NA | noncoding (546/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | AP009048 | 2727314 = | NA (NA) | noncoding (527/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 2727869 = | 20 (0.340) | 4 (0.070) | 3/94 | NT | 17.8% | intergenic (‑29/+156) | rrlG/gltW | 23S ribosomal RNA/tRNA‑Glu |
| ? | AP009048 | 3599170 = | NA (NA) | intergenic (‑8/+176) | rrlA/alaT | 23S ribosomal RNA/tRNA‑Ala | |||||
| * | ? | AP009048 | 2865565 = | 77 (1.320) | 4 (0.070) | 3/94 | NT | 5.4% | coding (526/876 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| ? | AP009048 | 2865587 = | 68 (1.260) | coding (504/876 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
| * | ? | AP009048 | = 2878891 | 35 (0.600) | 3 (0.060) | 3/92 | NT | 7.4% | coding (153/600 nt) | ygcH | hypothetical protein |
| ? | AP009048 | = 2878907 | 44 (0.830) | coding (137/600 nt) | ygcH | hypothetical protein | |||||
| * | ? | AP009048 | = 2899167 | 28 (0.480) | 3 (0.060) | 3/90 | NT | 10.8% | intergenic (‑238/‑81) | ygcW/yqcE | predicted deoxygluconate dehydrogenase/predicted transporter |
| ? | AP009048 | = 2899181 | 25 (0.480) | intergenic (‑252/‑67) | ygcW/yqcE | predicted deoxygluconate dehydrogenase/predicted transporter | |||||
| * | ? | AP009048 | = 2901661 | 71 (1.210) | 4 (0.080) | 3/92 | NT | 5.6% | coding (1110/1479 nt) | ygcE | predicted kinase |
| ? | AP009048 | = 2901673 | 72 (1.360) | coding (1122/1479 nt) | ygcE | predicted kinase | |||||
| * | ? | AP009048 | = 2926734 | 48 (0.820) | 4 (0.080) | 4/88 | NT | 8.5% | intergenic (+406/‑151) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter |
| ? | AP009048 | = 2926743 | 45 (0.890) | intergenic (+415/‑142) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter | |||||
| * | ? | AP009048 | = 2926963 | 52 (0.890) | 4 (0.070) | 3/96 | NT | 7.9% | coding (79/1290 nt) | sdaC | predicted serine transporter |
| ? | AP009048 | = 2926980 | 44 (0.800) | coding (96/1290 nt) | sdaC | predicted serine transporter | |||||
| * | ? | AP009048 | = 2955835 | 55 (0.940) | 5 (0.090) | 5/92 | NT | 8.7% | coding (1706/2889 nt) | ptr | protease III |
| ? | AP009048 | = 2955846 | 55 (1.040) | coding (1695/2889 nt) | ptr | protease III | |||||
| * | ? | AP009048 | 2971656 = | 65 (1.110) | 4 (0.080) | 3/92 | NT | 6.3% | coding (863/1194 nt) | ygeD | predicted inner membrane protein |
| ? | AP009048 | 2971686 = | 61 (1.160) | coding (833/1194 nt) | ygeD | predicted inner membrane protein | |||||
| * | ? | AP009048 | = 3064705 | 82 (1.400) | 4 (0.080) | 3/88 | NT | 5.5% | coding (1248/1479 nt) | ygfH | propionyl‑CoA:succinate‑CoA transferase |
| ? | AP009048 | = 3064723 | 67 (1.330) | coding (1266/1479 nt) | ygfH | propionyl‑CoA:succinate‑CoA transferase | |||||
| * | ? | AP009048 | = 3136909 | 41 (0.700) | 5 (0.100) | 3/88 | NT | 10.6% | coding (270/1860 nt) | gss | fused glutathionylspermidine amidase and glutathionylspermidine synthetase |
| ? | AP009048 | = 3136919 | 49 (0.970) | coding (260/1860 nt) | gss | fused glutathionylspermidine amidase and glutathionylspermidine synthetase | |||||
| * | ? | AP009048 | 3167346 = | 66 (1.130) | 3 (0.060) | 3/90 | NT | 5.0% | intergenic (‑146/+59) | ygiU/ygiV | predicted cyanide hydratase/predicted transcriptional regulator |
| ? | AP009048 | 3167365 = | 55 (1.060) | intergenic (‑165/+40) | ygiU/ygiV | predicted cyanide hydratase/predicted transcriptional regulator | |||||
| * | ? | AP009048 | 3182534 = | 74 (1.260) | 4 (0.080) | 3/92 | NT | 6.3% | coding (589/654 nt) | ribB | 3,4 dihydroxy‑2‑butanone‑4‑phosphate synthase |
| ? | AP009048 | 3182560 = | 52 (0.980) | coding (563/654 nt) | ribB | 3,4 dihydroxy‑2‑butanone‑4‑phosphate synthase | |||||
| * | ? | AP009048 | = 3261133 | 0 (0.000) | 38 (0.700) | 31/94 | NT | 100% | intergenic (‑59/‑69) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | AP009048 | 3262333 = | 0 (0.000) | coding (1183/1296 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | AP009048 | 3277473 = | 52 (0.890) | 5 (0.100) | 4/90 | NT | 9.6% | coding (282/465 nt) | yhaV | conserved hypothetical protein |
| ? | AP009048 | 3277502 = | 48 (0.930) | coding (311/465 nt) | yhaV | conserved hypothetical protein | |||||
| * | ? | AP009048 | 3283857 = | 61 (1.040) | 3 (0.060) | 3/90 | NT | 5.7% | coding (860/861 nt) | kbaY | tagatose 6‑phosphate aldolase 1, kbaY subunit |
| ? | AP009048 | 3283878 = | 46 (0.890) | intergenic (+20/‑147) | kbaY/agaB | tagatose 6‑phosphate aldolase 1, kbaY subunit/N‑acetylgalactosamine‑specific enzyme IIB component of PTS | |||||
| * | ? | AP009048 | 3459685 = | NA (NA) | 3 (0.060) | 3/88 | NT | NA | coding (1053/1185 nt) | tufB | protein chain elongation factor EF‑Tu |
| ? | AP009048 | 3459719 = | NA (NA) | coding (1019/1185 nt) | tufB | protein chain elongation factor EF‑Tu | |||||
| * | ? | AP009048 | = 3485246 | 48 (0.820) | 3 (0.060) | 3/92 | NT | 5.3% | coding (1664/2652 nt) | ppc | phosphoenolpyruvate carboxylase |
| ? | AP009048 | = 3485262 | 64 (1.210) | coding (1680/2652 nt) | ppc | phosphoenolpyruvate carboxylase | |||||
| * | ? | AP009048 | 3491066 = | 55 (0.940) | 4 (0.070) | 3/94 | NT | 6.8% | coding (1621/2298 nt) | pflD | predicted formate acetyltransferase 2 |
| ? | AP009048 | 3491086 = | 59 (1.090) | coding (1601/2298 nt) | pflD | predicted formate acetyltransferase 2 | |||||
| * | ? | AP009048 | = 3511876 | 58 (0.990) | 3 (0.060) | 3/90 | NT | 5.0% | coding (2006/2199 nt) | priA | primosome factor n' |
| ? | AP009048 | = 3511884 | 62 (1.200) | coding (2014/2199 nt) | priA | primosome factor n' | |||||
| * | ? | AP009048 | 3574453 = | 72 (1.230) | 5 (0.100) | 4/88 | NT | 8.0% | intergenic (‑19/+83) | yihN/yihM | predicted transporter/predicted sugar phosphate isomerase |
| ? | AP009048 | 3574473 = | 53 (1.050) | intergenic (‑39/+63) | yihN/yihM | predicted transporter/predicted sugar phosphate isomerase | |||||
| * | ? | AP009048 | = 3574516 | 58 (0.990) | 5 (0.100) | 5/90 | NT | 8.3% | intergenic (‑82/+20) | yihN/yihM | predicted transporter/predicted sugar phosphate isomerase |
| ? | AP009048 | = 3574523 | 60 (1.160) | intergenic (‑89/+13) | yihN/yihM | predicted transporter/predicted sugar phosphate isomerase | |||||
| * | ? | AP009048 | = 3593079 | 47 (0.800) | 3 (0.060) | 3/90 | NT | 7.3% | coding (185/627 nt) | dsbA | periplasmic protein disulfide isomerase I |
| ? | AP009048 | = 3593101 | 35 (0.680) | coding (163/627 nt) | dsbA | periplasmic protein disulfide isomerase I | |||||
| * | ? | AP009048 | = 3693350 | 0 (0.000) | 11 (0.210) | 7/92 | NT | 100% | noncoding (1524/1542 nt) | rrsC | 16S ribosomal RNA |
| ? | AP009048 | 4213165 = | NA (NA) | noncoding (1512/1542 nt) | rrsE | 16S ribosomal RNA | |||||
| * | ? | AP009048 | 3748797 = | 3 (0.050) | 50 (0.850) | 35/102 | NT | 94.3% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | AP009048 | 4056220 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
| * | ? | AP009048 | = 3750590 | 0 (0.000) | 67 (1.240) | 40/94 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | AP009048 | 3751790 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
| * | ? | AP009048 | 3784385 = | 98 (1.670) | 5 (0.100) | 5/90 | NT | 5.7% | coding (278/348 nt) | yidH | conserved inner membrane protein |
| ? | AP009048 | 3784405 = | 79 (1.530) | coding (298/348 nt) | yidH | conserved inner membrane protein | |||||
| * | ? | AP009048 | = 3835939 | 45 (0.770) | 3 (0.060) | 3/88 | NT | 6.3% | coding (641/936 nt) | rfaS | lipopolysaccharide core biosynthesis protein |
| ? | AP009048 | = 3835953 | 50 (0.990) | coding (655/936 nt) | rfaS | lipopolysaccharide core biosynthesis protein | |||||
| * | ? | AP009048 | = 3839078 | 66 (1.130) | 4 (0.080) | 3/90 | NT | 6.5% | coding (663/1017 nt) | rfaJ | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase |
| ? | AP009048 | = 3839092 | 56 (1.080) | coding (677/1017 nt) | rfaJ | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase | |||||
| * | ? | AP009048 | = 3846875 | 45 (0.770) | 5 (0.100) | 3/88 | NT | 10.5% | coding (144/858 nt) | htrL | hypothetical protein |
| ? | AP009048 | = 3846884 | 46 (0.910) | coding (153/858 nt) | htrL | hypothetical protein | |||||
| * | ? | AP009048 | 3873992 = | 92 (1.570) | 5 (0.090) | 5/94 | NT | 6.1% | coding (87/843 nt) | yibA | lyase containing HEAT‑repeat |
| ? | AP009048 | 4016461 = | 70 (1.300) | pseudogene (68/246 nt) | yrhC | ECK3468:JW5678:b4552; hypothetical protein fragment | |||||
| * | ? | AP009048 | = 3911914 | 78 (1.330) | 4 (0.070) | 3/98 | NT | 5.2% | coding (871/1455 nt) | xylB | xylulokinase |
| ? | AP009048 | = 3911928 | 70 (1.240) | coding (885/1455 nt) | xylB | xylulokinase | |||||
| * | ? | AP009048 | = 3921069 | 82 (1.400) | 4 (0.080) | 3/90 | NT | 5.0% | intergenic (‑132/‑302) | yiaG/yiaF | predicted transcriptional regulator/conserved hypothetical protein |
| ? | AP009048 | = 3921098 | 79 (1.530) | intergenic (‑161/‑273) | yiaG/yiaF | predicted transcriptional regulator/conserved hypothetical protein | |||||
| * | ? | AP009048 | = 4131932 | 57 (0.970) | 3 (0.060) | 3/88 | NT | 5.3% | coding (107/879 nt) | php | predicted hydrolase |
| ? | AP009048 | = 4131942 | 58 (1.150) | coding (117/879 nt) | php | predicted hydrolase | |||||
| * | ? | AP009048 | 4143468 = | 46 (0.790) | 3 (0.060) | 3/90 | NT | 7.0% | intergenic (‑55/+71) | nirC/nirD | nitrite transporter/nitrite reductase, NAD(P)H‑binding, small subunit |
| ? | AP009048 | 4143500 = | 39 (0.750) | intergenic (‑87/+39) | nirC/nirD | nitrite transporter/nitrite reductase, NAD(P)H‑binding, small subunit | |||||
| * | ? | AP009048 | 4274083 = | 90 (1.540) | 4 (0.080) | 3/90 | NT | 5.5% | coding (256/417 nt) | yjbQ | conserved hypothetical protein |
| ? | AP009048 | 4274101 = | 57 (1.100) | coding (274/417 nt) | yjbQ | conserved hypothetical protein | |||||
| * | ? | AP009048 | 4278235 = | 48 (0.820) | 4 (0.080) | 4/90 | NT | 8.1% | coding (521/537 nt) | ssb | Single‑stranded DNA‑binding protein |
| ? | AP009048 | 4278260 = | 49 (0.950) | intergenic (+9/+90) | ssb/yjcB | Single‑stranded DNA‑binding protein/predicted inner membrane protein | |||||
| * | ? | AP009048 | = 4281326 | 79 (1.350) | 4 (0.080) | 3/90 | NT | 5.3% | coding (268/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| ? | AP009048 | = 4281337 | 73 (1.410) | coding (279/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing | |||||
| * | ? | AP009048 | 4380976 = | 55 (0.940) | 3 (0.060) | 3/94 | NT | 5.1% | intergenic (+31/‑21) | efp/ecnA | Elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| ? | AP009048 | 4381000 = | 61 (1.130) | coding (4/126 nt) | ecnA | entericidin A membrane lipoprotein, antidote entericidin B | |||||
| * | ? | AP009048 | = 4420757 | 64 (1.090) | 5 (0.100) | 3/88 | NT | 7.1% | coding (216/276 nt) | yjfN | hypothetical protein |
| ? | AP009048 | = 4420766 | 76 (1.500) | coding (207/276 nt) | yjfN | hypothetical protein | |||||
| * | ? | AP009048 | = 4464552 | 65 (1.110) | 4 (0.080) | 4/84 | NT | 6.1% | intergenic (+17/+28) | cybC/nrdG | ECK4231:JW4195:b4236; cytochrome b562, truncated/anaerobic ribonucleotide reductase activating protein |
| ? | AP009048 | = 4464566 | 69 (1.430) | intergenic (+31/+14) | cybC/nrdG | ECK4231:JW4195:b4236; cytochrome b562, truncated/anaerobic ribonucleotide reductase activating protein | |||||
| * | ? | AP009048 | 4547362 = | 34 (0.580) | 14 (0.290) | 13/84 | NT | 34.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | AP009048 | 4547676 = | 25 (0.520) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | AP009048 | = 4547370 | 38 (0.650) | 13 (0.270) | 13/84 | NT | 31.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | AP009048 | = 4547666 | 25 (0.520) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | AP009048 | = 4547465 | 51 (0.870) | 3 (0.060) | 3/90 | NT | 6.2% | intergenic (+152/‑330) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | AP009048 | = 4547479 | 45 (0.870) | intergenic (+166/‑316) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | AP009048 | 4568033 = | 54 (0.920) | 3 (0.060) | 3/88 | NT | 6.4% | coding (359/969 nt) | yjiK | conserved hypothetical protein |
| ? | AP009048 | 4568058 = | 41 (0.810) | coding (334/969 nt) | yjiK | conserved hypothetical protein | |||||
| * | ? | AP009048 | 4625491 = | 49 (0.840) | 4 (0.070) | 3/94 | NT | 9.7% | coding (1209/1224 nt) | deoB | phosphopentomutase |
| ? | AP009048 | 4625515 = | 29 (0.540) | intergenic (+9/‑48) | deoB/deoD | phosphopentomutase/purine‑nucleoside phosphorylase | |||||