| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2727225 = | NA (NA) | 5 (0.090) | 3/92 | NT | NA | noncoding (616/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | AP009048 | 2727251 = | NA (NA) | noncoding (590/2904 nt) | rrlG | 23S ribosomal RNA | |||||
Only 100 of 105 total aligned reads displayed.
CGCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2727299‑2727225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaataTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGTA > AP009048/2727251‑2727320 CGCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG < 1:3542583/71‑1CGCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG < 1:4902440/71‑1CGCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG < 1:4709655/71‑1CGCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG < 1:3196182/71‑1 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGA < 1:2925016/71‑1 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGA < 1:3759353/71‑1 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGA < 1:4726521/71‑1 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG > 1:4376775/1‑70 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG > 1:621455/1‑70 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG > 1:2135600/1‑70 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG > 1:2009177/1‑70 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG > 1:1776164/1‑70 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG > 1:1755997/1‑70 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:3295447/71‑1 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:350911/71‑1 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:266439/1‑71 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:2467290/71‑1 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:2424242/71‑1 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:1029503/1‑71 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:1237458/71‑1 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:91312/71‑1 CTTAGGCGTGCGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:1265845/71‑1 TTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:1751548/1‑70 TTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:2840331/1‑70 TTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:2960683/1‑70 TTAGGCGTCTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAAACGAA > 1:4110093/1‑70 AGGCGTGTGACTGCGTACCTTTTGTATAATGTGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT < 1:2410309/69‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAT > 1:1256886/1‑71 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:123785/70‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:1092390/70‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:4667712/70‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:4603890/70‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:3647949/70‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT < 1:4829230/69‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT < 1:2313565/69‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT < 1:2978598/69‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT < 1:1647823/69‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:2920367/1‑68 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG > 1:76750/1‑66 GGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:4381500/69‑1 GGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT < 1:3512577/68‑1 GTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:4089848/66‑1 GTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGA < 1:3382788/63‑1 TGTTACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:83837/65‑1 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:4158953/65‑1 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:4012583/63‑1 TGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:3493367/63‑1 TGACTGAGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGA < 1:1084107/60‑1 ACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:812080/1‑59 ACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGA < 1:442575/58‑1 TGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:2591573/1‑57 TACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:3229564/53‑1 TACCTTTTGTATAATGGGTCAGCGACCTATATTCTGTAGCAAGGTTAACCG < 1:1524858/51‑1 ACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGA < 1:233944/51‑1 CCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:4433951/51‑1 CTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT > 1:1580410/1‑51 CTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG > 1:5140030/1‑48 CTTTTGTATAATGGGTCAGAGACTTATATTCTGTAGCAAGGTTAACCGAAT > 1:3914150/1‑51 TTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA > 1:1914875/1‑51 TTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA > 1:4784661/1‑49 TTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:1035704/1‑47 TGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:2586753/1‑46 TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:853638/42‑1 TGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:2662439/41‑1 GGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:4303274/38‑1 TCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:3359448/35‑1 TTATATTCTGTAGCAAGGTTAACCGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC < 1:4542724/67‑1 ATATTCTGTAGCAAGGTTAACCGATTATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCC > 1:2793249/1‑70 ATATTCTGTAGCAAGGTTAACCGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCC > 1:363736/1‑70 ATATTCTGTAGCAAGGTTAACCGAATATAAGTCGCTGACCCATTATACAAAAGGTAC > 1:3531236/1‑57 TATTCTGTAGCAAGGTTAACCGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCT > 1:4866075/1‑70 GAATATAAGTCGCTGACCCATTATAGAAAAGGTACG < 1:2709389/36‑1 GAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGT > 1:4764283/1‑40 GAATATAAGTCGCTGACACATTATACAAAAGGTACGCAGTCA > 1:2848906/1‑42 AATATAAGTCGCTTACCCATTATACAAAAGGTACGCAGTCACAC < 1:3517534/44‑1 AATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTAC > 1:3738047/1‑71 AATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGT < 1:1465214/69‑1 AATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAA < 1:821474/50‑1 AATATAAGTCGCTGACCAATTATACAAAAGGTACGCAGTCACACGCCTAA > 1:4066795/1‑50 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG < 1:289606/71‑1 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG < 1:1225262/71‑1 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG < 1:1584505/71‑1 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG > 1:548590/1‑71 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG < 1:5301985/71‑1 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG < 1:3407457/71‑1 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG < 1:288100/71‑1 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACAC > 1:3271430/1‑43 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGT < 1:1703996/71‑1 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG > 1:4764927/1‑70 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG > 1:337947/1‑70 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG > 1:4143024/1‑70 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG > 1:1348836/1‑70 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTG > 1:3848655/1‑66 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCA > 1:219027/1‑59 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA < 1:2325666/39‑1 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA > 1:1625512/1‑39 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA < 1:763452/39‑1 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGTA > 1:2456627/1‑71 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGTA > 1:2737701/1‑71 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGC > 1:430715/1‑43 CGCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2727299‑2727225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaataTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGTA > AP009048/2727251‑2727320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |