New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 309393	84 (1.430)	5 (0.090)	3/100	NT	5.5%	coding (503/588 nt)	yagZ	conserved hypothetical protein
	?	AP009048	= 309413	91 (1.590)					coding (483/588 nt)	yagZ	conserved hypothetical protein

GCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/309324‑309393 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGGTACCACCAATGGTACCACCGCAGTAACAGATTACAGCACTCTACCGG  <  AP009048/309413‑309364                                                                                                                          GCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGG                                                    <  1:1259889/70‑1 GCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGG                                                    <  1:1656424/70‑1         CTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGG                                                    <  1:2050169/62‑1             ACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACT‑‑‑GCGGTACCACCAATGG                                     >  1:848683/1‑70                                       TTCCGGTAGAGTGCTGTAATCTGTTACTGCGGCGGTACCACCAATGGTAC                                  <  1:4988646/50‑1                                       TTCCGGTAGAGTGCTGTAATCTGTTACTGCGGCGGTACCACCAATGGTAC                                  <  1:851708/50‑1                                         CCGGTAGAGTGCTGTAATCTGTTACTGCGGCGGTACCACCAATGGTACCA                                >  1:774292/1‑50                                              AGAGTGCTGTAATCTGTTACTGCGGTGGTACCA‑CAATGGTACCACC                              >  1:113239/1‑46                                                                      GCGGTACCACCAATGGTACCACCGCAGTAACAGATTACAGCACTCTACCGG  <  1:4536442/51‑1                                                                                                                          GCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/309324‑309393 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGGTACCACCAATGGTACCACCGCAGTAACAGATTACAGCACTCTACCGG  <  AP009048/309413‑309364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.