| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2423050 = | 28 (0.480) | 3 (0.060) | 3/90 | NT | 9.1% | coding (524/1521 nt) | yfcC | predicted inner membrane protein |
| ? | AP009048 | 2423074 = | 35 (0.680) | coding (548/1521 nt) | yfcC | predicted inner membrane protein | |||||
GGCAATATAGGTCACCAGGACGGTGGTAATACTGTCATAGCCCAGCCGGACCATTAGCGGTGCGATGATAATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2423123‑2423050‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatggTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCTATATTGCCACGCAAATCGGTTTTGCCAGT > AP009048/2423074‑2423144 GGCAATATAGGTCACCAGGACGGTGGTAATACTGTCATAGCCCAGCCGGACCATTAGCGGTGCGATGATAA > 1:1881806/1‑71 CAATATAGGTCACCAGGACGGTGGTAATACTGTCATAGCCCAGCCGGACCATTAGCGGTGCGATGATAATG > 1:1503637/1‑71 AATATAGGTCACCAGGACGGTGGTAATACTGTCATAGCCCAGCCGGACCATTAGCGGTGCGATGATAATG > 1:5341476/1‑70 TCACCAGGACGGTGGTAATACTGTCATAGCCCAGCCGGACCATTAGCGGTGCGATGATAATG > 1:1022832/1‑62 ACCAGGACGGTGGTAATACTGTCATAGCCCAGCCGGACCATTAGCGGTGCGATGAT > 1:4059432/1‑56 CCAGGACGGTGGTAATACTGTCATAGCCCAGCCGGACCATTAGCGGTGCGATGAT < 1:3963443/55‑1 GGACGGTGGTAATACTGTCATAGCCCAGCCGGACCATTAGCGGTGCGATGAT > 1:2967703/1‑52 TACTGTCATAGCCCAGCCGGACCATTAGCGGTGCGATGATAAT > 1:3029756/1‑43 ACTGTCATAGCCCAGCCGGACCATTAGCGGTGCGATGATAA > 1:4285380/1‑41 TGTCATAGCCCAGCCGGACCATTAGCGGTGCGATGATAAT < 1:1959294/40‑1 GGACCATTAGCGGTGCGATGATAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTG < 1:817247/65‑1 CATTAGCGGTGCGATGATAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCT < 1:4639154/65‑1 TTAGCGGTGCGATGATAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCTAT > 1:2145120/1‑65 TAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCTATATTGCCACGCAAATCGGTTTT > 1:1925034/1‑71 TAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCTATATTGCCACGCAAATCGGTTTT > 1:4331595/1‑71 TAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTG < 1:1666396/41‑1 AATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCT < 1:613496/39‑1 TGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCTATATTGCCACGCAAATCGGTT < 1:4606141/66‑1 TGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGAC > 1:4163506/1‑43 GGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCTATATTGCCACGCAAATCGGTTTTGC > 1:2987259/1‑69 GTCCGGCTGGGCTATGACAGTATTA‑CACCGTCCTGGTGACCTATATTGCCACGCAAATCGGTTTTGCCAGT < 1:889114/71‑1 GGCAATATAGGTCACCAGGACGGTGGTAATACTGTCATAGCCCAGCCGGACCATTAGCGGTGCGATGATAATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2423123‑2423050‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatggTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCTATATTGCCACGCAAATCGGTTTTGCCAGT > AP009048/2423074‑2423144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |