| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 270848 = | NA (NA) | 5 (0.090) | 4/92 | NT | NA | coding (1022/1152 nt) | insI | IS30 transposase |
| ? | AP009048 | 270875 = | NA (NA) | coding (1049/1152 nt) | insI | IS30 transposase | |||||
GTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/270922‑270848‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatgAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAG > AP009048/270875‑270943 GTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGAAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGA < 1:1276116/71‑1 TGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGAC < 1:2721688/71‑1 TCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT < 1:2743659/71‑1 TCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT > 1:5294029/1‑71 TCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT < 1:2737718/71‑1 TCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT < 1:3341288/71‑1 TCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT < 1:4109453/71‑1 TCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT > 1:2535561/1‑71 TCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACA > 1:508124/1‑70 TCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACA < 1:2405126/70‑1 TTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATG > 1:4328144/1‑70 GGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGA > 1:2201227/1‑60 TTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT < 1:3733181/57‑1 TTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT > 1:1911106/1‑57 TTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT > 1:38859/1‑57 GTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGAC > 1:3396888/1‑53 TTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT > 1:4875529/1‑54 GAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT > 1:2037722/1‑47 GAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGAC > 1:4043431/1‑45 CAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGAC < 1:2254018/42‑1 CAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT > 1:604722/1‑41 AACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGA < 1:380763/37‑1 CCAGATCTAGTTCATGTTGAGTATATTGGGCAAGAC < 1:4233432/36‑1 GTTCATGTTGAGTATATTGGGCAAGACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAAC > 1:1614206/1‑62 TTCATGTTGAGTATATTGGGCAAGACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGA > 1:232580/1‑70 CATGTTGAGTATATTGGGCAAGACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGA > 1:2295014/1‑68 CATGTTGAGTATATTGGGCAAGACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGA > 1:1537853/1‑68 TATTGGGCAAGACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGT < 1:4013806/70‑1 ACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGA < 1:2850966/71‑1 ACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGA < 1:3755933/71‑1 ACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGA < 1:5077099/71‑1 ACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTG < 1:1526583/55‑1 ACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAA < 1:483808/47‑1 CATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAA < 1:5017634/71‑1 CATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAA < 1:516467/71‑1 CATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAA < 1:611029/71‑1 CATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAA < 1:2726478/71‑1 CATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGA > 1:269779/1‑70 CATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGA > 1:1146116/1‑70 CATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGA > 1:3384189/1‑70 CATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTG < 1:2979685/54‑1 ATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAA < 1:3856290/71‑1 ATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAA < 1:5151840/71‑1 ATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGA < 1:1418157/69‑1 TGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAG < 1:4766833/71‑1 TGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAG < 1:4209737/71‑1 TGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAG < 1:2203156/71‑1 TGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAG < 1:607204/71‑1 TGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAA < 1:1667663/70‑1 TGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGA > 1:1154084/1‑68 GAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAA > 1:3200031/1‑69 GAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAA > 1:3738996/1‑69 GAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAA < 1:1554389/43‑1 GTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/270922‑270848‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatgAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAG > AP009048/270875‑270943 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |