New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 163287752 (0.890)3 (0.060) 3/94 NT 6.3% coding (1123/1284 nt) ydfJ predicted transporter
?AP009048 = 1632888 42 (0.780)coding (1112/1284 nt) ydfJ predicted transporter

CCTCTGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/1632805‑1632877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaTGACGGAATCCTGGTATCCGATCGCCATTATGATCATGGCATATTCAGTGATTGGTTTAATCTCTGCGC  <  AP009048/1632888‑1632820
                                                                                                                                              
CCTCTGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATAC                                                                         <  1:3028909/71‑1
 CTCTGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACC                                                                        <  1:2987234/71‑1
 CTCTGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATAC                                                                         <  1:634590/70‑1
  TCTGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATAC                                                                         >  1:5256909/1‑69
                         TAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCATGACGGAATCCTGGTAT                                                      >  1:1352913/1‑65
                         TAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCA                                                                       <  1:2900170/48‑1
                             CCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCATGACGGAATCCTGGTA                                                       <  1:3574379/60‑1
                               AATCACTGAATATGCCATGATCATAATGGCGATCGGATACCATGACGGAATCCTGGTATC                                                     >  1:3021642/1‑60
                                ATCACTGAATATGCCATGATCATAATGGCGATCGGATA                                                                          >  1:1864532/1‑38
                                                                       CATGACGGAATCCTGGTATCCGATCGCCATTATGATCATGGCATATTCAGTGATTGGTTTAATCTCTGCGC  >  1:3533636/1‑71
                                                                       CATGACGGAATCCTGGTATCCGATCGCCATTATGATCATGGCATATTCAGTGATTGGTTTAATCTCTGCGC  <  1:3560626/71‑1
                                                                       CATGACGGAATCCTGGTATCCGATCGCCATTATGATCATGGCATATTCAGTGATTGGTTTAATC         >  1:3338894/1‑64
                                                                        ATGACGGAATCCTGGTATCCGATCGCCATTATGATCATGGCATATTCAGTGATTGGT               >  1:2372642/1‑57
                                                                        ATGACGGAATCCTGGTATCCGATCGCCATTATGATCATGGCATATTCAGTGATTGGT               >  1:3511693/1‑57
                                                                                                                                              
CCTCTGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/1632805‑1632877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaTGACGGAATCCTGGTATCCGATCGCCATTATGATCATGGCATATTCAGTGATTGGTTTAATCTCTGCGC  <  AP009048/1632888‑1632820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.