| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3911914 | 78 (1.330) | 4 (0.070) | 3/98 | NT | 5.2% | coding (871/1455 nt) | xylB | xylulokinase |
| ? | AP009048 | = 3911928 | 70 (1.240) | coding (885/1455 nt) | xylB | xylulokinase | |||||
AAGCAAGCCAGAAAGCGCCGTACATAGCTTTTGCCATGCGCTACCGCAACGTTGGCATTTAATGTCTGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3911844‑3911914‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaCGCTGCACTCAGCATCACAGACATTAAATGCCAACGTTGCGGTAGCGCATGGCAAAAGCTATGTACGG < AP009048/3911928‑3911861 AAGCAAGCCAGAAAGCGCCGTACATAGCTTTTGCCATGCGCTACCGCAACGTTGGCATTTAATGTCTGTGA > 1:505032/1‑71AAGCAAGCCAGAAAGCGCCGTACATAGCTTTTGCCATGCGCTACCGCAACGTTGGCATTTAATGTCTGTGA > 1:746394/1‑71 AGCAAGCCAGAAAGCGCCGTACATAGCTTTTGCCATGCGCTACCGCAACGTTGGCATTTAATGTCTGTG < 1:1359544/69‑1 AAAGCGCCGTACATAGCTTTTGCCATGCGCTACCGCAACGTTGGCATTTAATGTCTGTGA > 1:4501465/1‑60 AGCTTTTGCCATGCGCTACCGCAACGTTGGCATTTAATGTCTGTGACGCTGCACTCAG > 1:5279909/1‑58 TTGCCATGCGCTACCGCAACGTTGGCATTTAATGTCTGTGA > 1:5269955/1‑41 CCGCAACGTTGGCATTTAATGTCTGTGACGCTGCACTCAGCATCAC > 1:496753/1‑46 CCGCAACGTTGGCATTTAATGTCTGTGACGCTGAACTCAGCATCAC > 1:165759/1‑46 GCAACGTTGGCATTTAATGTCTGTGACGCTGCACTCAGCAT < 1:3536454/41‑1 GACGCTGCACTCAGCATCACAGACATTAAATGCCAACGTTGCGGTAGCGCATGGCAAAAGCTATGTACGG < 1:5213777/70‑1 GACGCTGCACTCAGCATCACAGACATTAAATGCCAACGTTGCGGTAGCGCATGGCAA < 1:811422/57‑1 GACGCTGCACTCAGCATCACAGACATTAAATGCCAACGTTGCGGTAGCGCATG > 1:2309722/1‑53 ACGCTGCACTCAGCATCACAGACATTAAATGCCAACGTTGCGGTAGCGCA > 1:1445243/1‑50 AAGCAAGCCAGAAAGCGCCGTACATAGCTTTTGCCATGCGCTACCGCAACGTTGGCATTTAATGTCTGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3911844‑3911914‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaCGCTGCACTCAGCATCACAGACATTAAATGCCAACGTTGCGGTAGCGCATGGCAAAAGCTATGTACGG < AP009048/3911928‑3911861 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |