| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1518768 | 35 (0.600) | 3 (0.070) | 3/76 | NT | 8.8% | intergenic (+52/‑335) | ydcW/ydcX | medium chain aldehyde dehydrogenase/predicted inner membrane protein |
| ? | AP009048 | = 1518777 | 36 (0.830) | intergenic (+61/‑326) | ydcW/ydcX | medium chain aldehyde dehydrogenase/predicted inner membrane protein | |||||
CGTCGTCCGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1518686‑1518768‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtactgtcagagAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTATCCTTAATGTTT < AP009048/1518777‑1518708 CGTCGTCCGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGC < 1:315134/71‑1 TCGTCCGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCG > 1:2492813/1‑70 TCCGTCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTAC > 1:549000/1‑70 TCCGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACT < 1:2151609/71‑1 CGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAATAGTATGAGATGATCTTGCGTACTG < 1:4472437/70‑1 CGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGT > 1:604447/1‑71 CGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGT > 1:570874/1‑71 CGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGT > 1:4830607/1‑71 CGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGT > 1:5325427/1‑71 CGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGT < 1:4986999/71‑1 CGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGT > 1:1790209/1‑71 CGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGT < 1:4980701/71‑1 CGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGAACTGT > 1:194460/1‑71 CCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGT > 1:2539455/1‑69 CCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGT > 1:2995384/1‑69 CACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGT > 1:3097051/1‑68 ACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCA > 1:2927946/1‑69 GTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAG > 1:3069352/1‑70 TTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGAAATCAGTGCTCTGA < 1:3266317/71‑1 ATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGT < 1:4044962/40‑1 TTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGT < 1:1601875/39‑1 GATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGAAATC > 1:2582022/1‑44 TCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGAAATCAGTGCTCT < 1:2951341/50‑1 TCGTAAGAGTATGAGATGATCTTGCGTACTGTCAG > 1:1790151/1‑35 AGAGTATGAGATGATCTTGCGTACTGTCAGAGAAATCAGTGCT < 1:4621407/43‑1 CGTACTGTCAGAGAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTA < 1:1489948/71‑1 GTACTGTCAGAGAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTAT < 1:1991544/71‑1 GTACTGTCAGAGAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATAT < 1:1100471/68‑1 ACTGTCAGAGAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTA > 1:2544662/1‑68 CTGTCAGAGAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTATCCT > 1:16383/1‑71 CTGTCAGAGAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAA < 1:3417958/62‑1 TCAGAGAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTATCCTTAA < 1:584179/71‑1 CAGAGAATTCAGTGCTCTGACAGTACGCATGATCATCTCATACTCTTACGATCTGCAATATTATCCTTAA < 1:1045277/70‑1 AGAGAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTATCCTTAATG > 1:3773355/1‑71 AGAGAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTATCCT > 1:771669/1‑66 GAGAAATCAGTGCTCTGACAGTACGCAAGATCATCTCA < 1:1710213/38‑1 GAGAAATCAGTGCTCTGACAGTACGCAAGATCATCTCA < 1:1337227/38‑1 AGAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTATCCTTAATGTT < 1:4779699/71‑1 GAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTATCCTTAATGTTT < 1:3386650/71‑1 GAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTATCCTTAATGTTT < 1:1449561/71‑1 GAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTATCCTTAATGTTT < 1:768541/71‑1 CGTCGTCCGCCACGTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1518686‑1518768‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtactgtcagagAAATCAGTGCTCTGACAGTACGCAAGATCATCTCATACTCTTACGATCTGCAATATTATCCTTAATGTTT < AP009048/1518777‑1518708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |