| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 296831 | 58 (0.990) | 4 (0.080) | 4/88 | NT | 7.3% | coding (185/411 nt) | yagP | predicted transcriptional regulator |
| ? | AP009048 | = 296842 | 52 (1.030) | coding (174/411 nt) | yagP | predicted transcriptional regulator | |||||
GGCCTGAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/296759‑296831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagatTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCAG < AP009048/296842‑296773 GGCCTGAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCA < 1:1212849/70‑1 GAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACG < 1:4725428/63‑1 GAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACG < 1:5091923/63‑1 TTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATTACGACTAA > 1:3002052/1‑71 GCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCA > 1:4342189/1‑49 AATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGAT < 1:2120702/50‑1 TTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAG < 1:1433016/46‑1 GTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATTACGACTAATGATCTGC < 1:5124141/63‑1 CGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATTACGACTAATGATCTGC > 1:1229941/1‑53 GCAAGAGCCAGCCTCAACATCAGACGCAGATTACGACTAATGATCTGCGT > 1:5050244/1‑50 CGCAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGC > 1:1297943/1‑70 CGCAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTT < 1:1185048/47‑1 CGCAGATTACGACTAATGATCTGCGTCTGATGTTGA < 1:1952716/36‑1 GCAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCA > 1:1304917/1‑71 CAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCGGGCGGAGGAATAACAATTGCCAC > 1:2817761/1‑71 CAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCAC > 1:1948315/1‑71 CAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCAC > 1:5240560/1‑71 CAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATT > 1:4672979/1‑66 AGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACT > 1:620213/1‑71 AGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACT < 1:3647681/71‑1 AGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACT < 1:1575134/71‑1 ATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCA < 1:3198407/71‑1 ATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAA < 1:5190876/61‑1 ATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAAC < 1:3328433/59‑1 TTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCAG < 1:4515596/71‑1 TTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCA < 1:2944650/70‑1 GGCCTGAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/296759‑296831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagatTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCAG < AP009048/296842‑296773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |