New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 169383	46 (0.790)	3 (0.060)	3/94	NT	5.7%	coding (1900/2244 nt)	fhuA	ferrichrome outer membrane transporter
	?	AP009048	= 169404	56 (1.040)					coding (1921/2244 nt)	fhuA	ferrichrome outer membrane transporter

GGCGCTGTCGGCGAGTGTTAACGTAGTCGGTTCTTATACTTACACCGATGCGGAATACACCACCGATACTACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/169310‑169383 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctGTGCAGGCGTATTGCCTTTATAGGTAGTATCGGTGGTGTATTCCGCATCGGTGTAAGTATAAGAACCGA  <  AP009048/169404‑169336                                                                                                                                                 GGCGCTGTCGGCGAGTGTTAACGTAGTCGGTTCTTATACTTACACCGATGCGGAATACACCACCGATACTA                                                                          <  1:1054683/71‑1   CGCTGTCGGCGAGTGTTAACGTAGTCGGTTCTTATACTTACACCGATGCGGAATACACCACCGATACTACC                                                                        >  1:1130069/1‑71        TCGGCGAGTGTTAACGTAGTCGGTTCTTATACTTACACCGATGCGGAATACACCACCGATACTACC                                                                        >  1:3760987/1‑66        TCGGCGAGTGTTAACGTAGTCGGTTCTTATACTTACACCGATGCGGAATACACCACCGATACTACC                                                                        >  1:4298046/1‑66                           TCGCTTCTTATACTTACACCGATGCGGAATACACCACCGATACTACCTGTGCAGGCGTATTGCCTTTATA                                                 <  1:3730185/70‑1                             GGTTCTTATACTTACACCGATGCGGAATACACCACCGATACTACCTGTGCAGGCGTATTGCCTTTATAGG                                               <  1:255373/70‑1                                    ATACTTACACCGATGCGGAATACACCACCGATACTACCTGTGCAGGCGTATTGCCTTTATAGGTAGTA                                          <  1:2794318/68‑1                                                                       ACCTGTGCAGGCGTATTGCCTTTATAGGTAGTATCGGTGGTGTATTCCGCATCGGTGTAAGTATAAGAACC    <  1:4627281/71‑1                                                                         CTGTGCAGGCGTATTGCCTTTATAGGTAGTATCGGTTGTGTATTCCGCATCGGTGTAAGTATAAGAACCGA  <  1:3511947/71‑1                                                                         CTGTGCAGGCGTATTGCCTTTATAGGTAGTATCGGTGGTGTATTCCGCATCGGTG                  <  1:883426/55‑1                                                                                                                                                 GGCGCTGTCGGCGAGTGTTAACGTAGTCGGTTCTTATACTTACACCGATGCGGAATACACCACCGATACTACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/169310‑169383 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctGTGCAGGCGTATTGCCTTTATAGGTAGTATCGGTGGTGTATTCCGCATCGGTGTAAGTATAAGAACCGA  <  AP009048/169404‑169336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.