| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 24616 | 63 (1.080) | 3 (0.060) | 3/94 | NT | 5.4% | coding (2226/2817 nt) | ileS | isoleucyl‑tRNA synthetase |
| ? | AP009048 | = 24637 | 48 (0.890) | coding (2247/2817 nt) | ileS | isoleucyl‑tRNA synthetase | |||||
CTCCGTTGAGATGGGTTCCTTCTACCTCGACATCATCAAAGACCGTCAGTACACCGCCAAAGCGGACAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/24547‑24616‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtCTGGCAGCTACGACGCGCCACACTGTCCGCTTTGGCGGTGTACTGACGGTCTTTGATGATGTCGAGGTAG < AP009048/24637‑24568 CTCCGTTGAGATGGGTTCCTTCTACCTCGACATCATCAAAGACCGTCAGTACACCGCCAAAGCGGACAGT < 1:4549185/70‑1CTCCGTTGAGATGGGTTCCTTCTACCTCGACATCATCAAAGACCGTCAGTACACCGCCAAAGCGGACAG < 1:3168635/69‑1 TTCTACCTCGACATCATCAAAGACCGTCAGTACACCGCCAAAGCGGACAGTCTGGCAGCTACGACGCGCCA > 1:1884238/1‑71 CTACCTCGACATCATCAAAGACCGTCAGTACACCGCCAAAGCGGACAGTCTGGCAGCTACGACGCGCCA < 1:1707623/69‑1 TACCTCGACATCATCAAAGACCGTCAGTACACCGCCAAAGCGGACAG < 1:1828252/47‑1 TACCTCGACATCATCAAAGACCGTCAGTACACCGCCAAAGCGGACA > 1:1271380/1‑46 TCAGTACACCGCCAAAGCGGACAGTCTGGCAGCTACGACGCGCCACA > 1:1015896/1‑47 AGTCTGGCAGCTACGACGCGCCACACTGTCCGCTTTGGCGGTGTACTGACGGTCTTTGATGATGTCGAGGT < 1:3019842/71‑1 GTCTGGCAGCTACGACGCGCCACACTGTCCGCTTTGGCGGTGTACTGACGGTCTTTGATGATGTAGAGG > 1:3010414/1‑69 TCTGGCAGCTACGACGCGCCACACTGTCCGCTTTGGCGGTGTACTGACGGTCTTTGATGATGTCGAGGTAG < 1:2162368/71‑1 CTCCGTTGAGATGGGTTCCTTCTACCTCGACATCATCAAAGACCGTCAGTACACCGCCAAAGCGGACAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/24547‑24616‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtCTGGCAGCTACGACGCGCCACACTGTCCGCTTTGGCGGTGTACTGACGGTCTTTGATGATGTCGAGGTAG < AP009048/24637‑24568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |