| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1561483 = | 64 (1.090) | 3 (0.060) | 3/88 | NT | 5.5% | coding (142/897 nt) | ddpC | D‑Ala‑D‑Ala transporter subunit |
| ? | AP009048 | 1561513 = | 48 (0.950) | coding (112/897 nt) | ddpC | D‑Ala‑D‑Ala transporter subunit | |||||
CTGGTATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1561558‑1561483‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgatgaCTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCGCGT > AP009048/1561513‑1561579 CTGGTATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGAT < 1:993391/71‑1CTGGTATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGAT > 1:4808130/1‑71 TATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATGATG < 1:2275881/71‑1 TATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATGATG < 1:883868/71‑1 TATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATGATG < 1:4635985/71‑1 ATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATGATGA > 1:504833/1‑71 AGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATG > 1:624706/1‑55 GCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGAT < 1:4110266/45‑1 CCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATG < 1:2963515/41‑1 CCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATG < 1:3507495/41‑1 CGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGAT < 1:2545585/39‑1 TCATCATTGTATTAATGCTAT‑‑‑TGATGACTGCGCTGGTCACGGTGA < 1:4793812/45‑1 CATCATTGTATTAATGCTATTGATGATGACTGCGCTGGTCACGGTGAGCGGA < 1:525040/52‑1 CATTGTATTAATGCTATTGATGATGACTGCGCTGGTCACGGTGAGCGGACTG > 1:701543/1‑52 TGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCGC > 1:2011837/1‑71 TGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCG > 1:3812660/1‑70 ATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCGCG > 1:980940/1‑70 GACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCGCGT < 1:1850408/69‑1 CTGGTATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1561558‑1561483‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgatgaCTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCGCGT > AP009048/1561513‑1561579 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |