New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 1990175 =57 (0.970)3 (0.060) 3/82 NT 6.5% intergenic (‑280/‑184) yecJ/yecR hypothetical protein/hypothetical protein
?AP009048 1990199 = 41 (0.870)intergenic (‑304/‑160) yecJ/yecR hypothetical protein/hypothetical protein

TGTCAGAAATAGGGGGGCTGTTTTTTGATTATCATTTTTATAACATTAAAGGGGTATTTATGTGATTTGTATCACATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/1990254‑1990175
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcacataaaTACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAGATG  >  AP009048/1990199‑1990264
                                                                                                                                                  
TGTCAGAAATAGGGGGGCTGTTTTTTGATTATCATTTTTATAACATTAAAGGGGTATTTATGTGATTTGTA                                                                             >  1:5164588/1‑71
       AATAGGGGGGCTGTTTTTTGATTATCATTTTTATAACATTAAAGGGGTATTTATGTGATTTGTATCACATA                                                                      <  1:2867722/71‑1
                         TGATTATCATTTTTATAACATTAAAGGGGTATTTATGTGATTTGTA                                                                             >  1:4502569/1‑46
                                                          TATGTGATTTGTATCACATAAATACCCCTTTAATGTTATAAAAATGATAA                                        >  1:3527784/1‑50
                                                           ATGTGATTTGTATCACATAAATACCCCTTTAATGTTATAAAAA                                              <  1:1969794/43‑1
                                                             GTGATTTGTATCACATAAATACCCCTTTAATGTTATAAAAATGA                                           >  1:3289930/1‑44
                                                                      ATCACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTA        >  1:2047065/1‑70
                                                                         ACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAGA    <  1:451034/71‑1
                                                                         ACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAG     <  1:3240398/70‑1
                                                                         ACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAG     <  1:5160621/70‑1
                                                                         ACATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAG     <  1:900338/70‑1
                                                                           ATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAGATG  <  1:4670325/71‑1
                                                                           ATAAATACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCT                <  1:4473701/57‑1
                                                                             AAATACCCCTTTAATGTTATAAAAATGATAATCAAAAA                                 <  1:1165320/38‑1
                                                                             AAATACCCCTTTAATGTTATAAAAATGATAATCAAAAA                                 <  1:2382297/38‑1
                                                                                                                                                  
TGTCAGAAATAGGGGGGCTGTTTTTTGATTATCATTTTTATAACATTAAAGGGGTATTTATGTGATTTGTATCACATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/1990254‑1990175
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcacataaaTACCCCTTTAATGTTATAAAAATGATAATCAAAAAACAGCCCCCCTATTTCTGACACCTACAGATG  >  AP009048/1990199‑1990264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.