| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 227143 = | NA (NA) | 3 (0.060) | 3/92 | NT | NA | noncoding (1385/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 227161 = | NA (NA) | noncoding (1403/2904 nt) | rrlH | 23S ribosomal RNA | |||||
CAACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/227217‑227143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGC > AP009048/227161‑227230 CAACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAAC < 1:4037462/71‑1CAACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAAC < 1:5358521/71‑1CAACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAAC < 1:1726030/71‑1CAACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGAAATATTAAC > 1:3178069/1‑71CAACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCATTCGCAGTAACACCAAGTACAGGAATATTAAC < 1:3587980/71‑1 ACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCT < 1:4106567/71‑1 ACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCT < 1:1380333/71‑1 ACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAAC < 1:4246312/69‑1 CCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTGACCT < 1:5046077/70‑1 CCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTG > 1:4732748/1‑71 CCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTG > 1:1569639/1‑71 CCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTG > 1:4188797/1‑71 CCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTG > 1:4464282/1‑71 CCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTG > 1:4643333/1‑71 CCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTG > 1:2200470/1‑71 CGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT < 1:3906708/71‑1 CGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT < 1:434978/71‑1 CGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT > 1:3780491/1‑71 CGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT < 1:3444172/71‑1 CGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT < 1:4943310/71‑1 CGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT < 1:4994622/71‑1 CGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT > 1:758449/1‑71 CGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT < 1:1060962/71‑1 CGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAAC > 1:1068428/1‑67 GTCTCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGat > 1:1294009/1‑69 CCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAACTACAGGAATATTAACCTG > 1:3483070/1‑64 GGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAAC > 1:5144628/1‑59 GCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT < 1:776878/62‑1 CCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT < 1:4196252/61‑1 CAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAAC > 1:3091503/1‑56 CAACATAGCCTTCTCCGTCCCCCATTCGCAGTAACACCAAGAACAGGAAAATTAAC > 1:665539/1‑56 CCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAAC > 1:5169787/1‑48 CTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT < 1:3039808/51‑1 CTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCT < 1:2401809/49‑1 TCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT < 1:2040349/49‑1 CTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT > 1:4275657/1‑48 CTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAAC < 1:2753293/44‑1 CCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT < 1:3623153/39‑1 CCTTCGCAGTAACACCAAGTACAGGAATATTAACCTG < 1:1464811/37‑1 TTCGCAGTAACACCAAGTACAGGAATATTAACCTGT > 1:2655244/1‑36 TTCGCAGTAACACCAAGTACAGGAATATTAACCTGT > 1:2870745/1‑36 TTCGCAGTAACACCAAGTACAGGAATATTAACCTGT < 1:3214617/36‑1 AGTACAGGAATATTAACCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGC > 1:2585560/1‑70 ACAGGAATATTAACCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGC > 1:2780412/1‑62 GAATATTAACCTGTACTTGGTGTTACTGCGAAGGG < 1:1313157/35‑1 tcaTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTT > 1:4960258/4‑71 CCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTT > 1:818996/1‑70 CCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTT < 1:929004/70‑1 CCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTT < 1:525039/70‑1 CCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTT < 1:575201/70‑1 CCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTT < 1:3679932/70‑1 CCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGC > 1:4092402/1‑54 CCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGC > 1:878393/1‑49 CCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTAT < 1:4600583/43‑1 CCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTAT < 1:5212816/43‑1 CCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTAT < 1:2885865/43‑1 CCTGTACTTGGGGTTACTGCGCAGGGGGGACGGAGAAGGCTATGTTGGCCGG < 1:1603722/52‑1 CTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTT < 1:4044102/70‑1 CTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTT < 1:2627229/70‑1 CTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGAC < 1:1086978/56‑1 CTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGAC > 1:4127254/1‑56 CTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCG > 1:2687071/1‑54 CTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCG < 1:4686015/54‑1 CTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGG > 1:1192493/1‑52 CTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTG < 1:1144781/46‑1 CTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTAT < 1:3916497/42‑1 CTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAG > 1:4763377/1‑37 TGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTT > 1:3589419/1‑69 TGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTT < 1:1318182/69‑1 TGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTT > 1:2776836/1‑69 TGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCG < 1:2212116/49‑1 TGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTA < 1:4438427/40‑1 GTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAG > 1:1052898/1‑71 GTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAG > 1:2467332/1‑71 GTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAG > 1:686475/1‑71 GTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGG < 1:939208/56‑1 GTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGA < 1:3191330/53‑1 GTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGA < 1:2533391/53‑1 GTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGC < 1:1429888/46‑1 GTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATG > 1:1513067/1‑41 GTACTTGGTG‑TACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTT > 1:4891726/1‑66 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGAGGGTTGTCCCGGTTTAAG < 1:2616771/70‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGC < 1:1075123/71‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGC < 1:4092261/71‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGC < 1:4459225/71‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGC < 1:417168/71‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGC < 1:1844393/71‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGC > 1:3695443/1‑71 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGC < 1:3520540/71‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGC < 1:351267/71‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGC < 1:2320414/71‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAG < 1:1511760/70‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAA < 1:1631043/69‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAA < 1:2956969/69‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAA < 1:2611677/69‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTAAAGC > 1:2080949/1‑71 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGG < 1:1619912/55‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGA > 1:1141374/1‑52 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTG < 1:2113555/43‑1 TACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTAT < 1:2821702/39‑1 CAACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/227217‑227143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGC > AP009048/227161‑227230 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |