| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3846875 | 45 (0.770) | 5 (0.100) | 3/88 | NT | 10.5% | coding (144/858 nt) | htrL | hypothetical protein |
| ? | AP009048 | = 3846884 | 46 (0.910) | coding (153/858 nt) | htrL | hypothetical protein | |||||
GTTCCGTGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3846803‑3846875‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaaatAATCATCTCATTTTCAAGTGCGGCCAGACGCTCAAAGTAACTAAAATAAACATCAACTGAACGAGCTA < AP009048/3846884‑3846817 GTTCCGTGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAA < 1:5082643/71‑1GTTCCGTGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAA > 1:2553364/1‑70 TTCCGTGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAA > 1:3651166/1‑71 TTCCGTGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTG > 1:2952474/1‑67 CGTGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAAT > 1:4705584/1‑69 TGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAA < 1:1930884/64‑1 AAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAA < 1:3682380/63‑1 GATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAAT > 1:2992016/1‑45 GATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAA > 1:914994/1‑42 AGTTACTTTGAGCGTCTGGCCGCACTTGAAAATAATCATC < 1:4215328/40‑1 AGTTACTTTGAGCGTCTGGCCGCACTTGAAAATAATCATC < 1:3412330/40‑1 ACTTTGAGCGTCTGGCCGCACTTGAAAATAATCATCTCATTTT > 1:3031238/1‑43 TGAGCGTCTGGCCGCACTTGAAAATAATCATCTCATT > 1:3536789/1‑37 TGAGCGTCTGGCCGCACTTGAAAATAATCATCTCATT > 1:4059090/1‑37 TGAAAATAATCATCTCATTTTCAAGTGCGGCCAGACGCTCAAAGTAACTAAAATAAACATCAACTGAACGA < 1:1721864/71‑1 TGAAAATAATCATCTCATTTTCAAGTGCGGCCAGACGCTCAAAGTAACTAAAATAAACATCA < 1:2553449/62‑1 GAAAATAATCATCTCATTTTCAAGTGCGGCCAGACGCTCAAAGTAACTAAAATAAACATC > 1:95664/1‑60 AAAATAATCATCTCATTTTCAAGTGCGGCCAGACGCTCAAAGTAACTAAAATAAACATCAACTGAACGAGC > 1:1673161/1‑71 AAAATAATCATCTCATTTTCAAGTGCGGCCAGACGCTCAAAGTAACTAAAATAAAC > 1:5265795/1‑56 AAATAATCATCTCATTTTCAAGTGCGGCCAGACGCTCAAAGTAACTAAAATAAACATCAACTGAACGAGC > 1:657489/1‑70 AAATAATCATCTCATTTTCAAGTGCGGCCAGACGCTCAAAGTAACTAAAATAAACATCAACTGAA > 1:2848938/1‑65 AATAATCATCTCATTTTCAAGTGCGGCCAGACGCTCAAAGTAACTAAAATAAACATCAACTGAACGAGCTA < 1:2073477/71‑1 AATAATCATCTCATTTTCAAGTGCGGCCAGACGCTCAAAGTAACTAAAATAAACATCAACTGAACGAGC > 1:3898422/1‑69 GTTCCGTGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3846803‑3846875‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaaatAATCATCTCATTTTCAAGTGCGGCCAGACGCTCAAAGTAACTAAAATAAACATCAACTGAACGAGCTA < AP009048/3846884‑3846817 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |