| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1044511 | 44 (0.750) | 3 (0.060) | 3/82 | NT | 6.9% | coding (122/2181 nt) | yccC | cryptic autophosphorylating protein tyrosine kinase Etk |
| ? | AP009048 | = 1044520 | 46 (0.980) | coding (113/2181 nt) | yccC | cryptic autophosphorylating protein tyrosine kinase Etk | |||||
TTTTTGCTCAACCTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAGCGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1044432‑1044511‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcagcgtgaCCGCGTTATTCACGCTGATCGCTGTCGCTTACTCGCTGTTAAGCACACCAATTTATCAGGCAGATACTC < AP009048/1044520‑1044452 TTTTTGCTCAACCTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGA > 1:1770665/1‑71 TTTGCTCAACCTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGAT < 1:3942763/70‑1 TTTGCTCAACCTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGAT > 1:3138289/1‑70 GCTCAACCTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAG < 1:1364191/70‑1 GCTCAACCTGGACCAGAGTATCTGCCTCATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAG < 1:2971940/70‑1 CAACCTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAGCGT > 1:4110635/1‑70 CAACCTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAGCGT > 1:319148/1‑70 AACCTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAGCGTGA < 1:2128284/71‑1 AACCTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAGCGT < 1:1959842/69‑1 AACCTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAG > 1:2703463/1‑66 AACCTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGAT > 1:2628722/1‑63 CTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAGCGTG > 1:4560055/1‑67 CCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAGCGTGACCGCGTTATTCACGCTG < 1:433912/68‑1 TGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAGCGTGACCGCGTTATTCACGC < 1:2511208/64‑1 ATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAGCGTGACCGCGTTATTCACGCTG > 1:4310472/1‑64 TTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAGC < 1:2256028/38‑1 TGTGCTTAACAGCGAGTAAGCGACAGCGATCAGCGT < 1:905248/36‑1 ATCAGCGTGACCGCGTTATTCACGCTGATCGCTGTCGCTTACTCGCTGTTAAGCACACCAATTTATCAGG < 1:2483386/70‑1 ATCAGCGTGACCGCGTTATTCACGCTGATCGCTGTCGCTTACTCGCTGTTAAGCACACCAATTTATCAGG < 1:5129842/70‑1 ATCAGCGTGACCGCGTTATTCACGCTGATCGCTGTCGCTTACTCGCTGTTAAGCACACCAATTTAT < 1:1634712/66‑1 ATCAGCGTGACCGCGTTATTCACGCTGATCGCTGTCGCTTACTCGCTGTTAAGCACACCAATTTAT < 1:74846/66‑1 AGCGTGACCGCGTTATTCACGCTGATCGCTGTCTCTTACTCGCTGTT > 1:2364494/1‑47 TGACCGCGTTATTCACGCTGATCGCTGTCGCTTACTCGCTGTTAAGCACACCAATTTATCAGGCAG > 1:1178141/1‑66 ACCGCGTTATTCACGCTGATCGCTGTCGCTTACTCGCTGTTAAGCACACCAATTTATCAGGCAGATACTC < 1:2634284/70‑1 ACCGCGTTATTCACGCTGATCGCTGTCGCTTACTCGCTGTTAAGCACACCAATTTATCAGGCAGATACTC < 1:4815665/70‑1 TTTTTGCTCAACCTGGACCAGAGTATCTGCCTGATAAATTGGTGTGCTTAACAGCGAGTAAGCGACAGCGATCAGCGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1044432‑1044511‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcagcgtgaCCGCGTTATTCACGCTGATCGCTGTCGCTTACTCGCTGTTAAGCACACCAATTTATCAGGCAGATACTC < AP009048/1044520‑1044452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |