| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3784385 = | 98 (1.670) | 5 (0.100) | 5/90 | NT | 5.7% | coding (278/348 nt) | yidH | conserved inner membrane protein |
| ? | AP009048 | 3784405 = | 79 (1.530) | coding (298/348 nt) | yidH | conserved inner membrane protein | |||||
TGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3784460‑3784385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaataTTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTATGCCGGATAGCCGCAAAGCCAGACGCAT > AP009048/3784405‑3784473 TGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGAT > 1:1212227/1‑71TGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGAT > 1:3144584/1‑71 GCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGAT < 1:5134770/70‑1 GCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGAT < 1:3318411/70‑1 GGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAA < 1:1980596/71‑1 GCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAAT < 1:426345/71‑1 GCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAA > 1:3974854/1‑70 GCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAA > 1:2651806/1‑70 CTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATA < 1:1718558/71‑1 CTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCA‑GACCATCAATATTAAGCTAATGATTAAT > 1:2433821/1‑69 ATCACCGCCACGACCATCAATATTAAGCTAATGATT > 1:552385/1‑36 ATATTAAGCTAATGATTAATATTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTATGCCGGA > 1:2520451/1‑69 TATTAAGCTAATGATTAATATTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTATGC < 1:195036/64‑1 TATTAAGCTAATGATTAATATTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTA < 1:3061596/61‑1 AAGCTAATGATTAATATTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTATGCCGGATAGCCG > 1:2396197/1‑70 GCTAATGATTAATATTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTATGCCGGATAGCCGCA < 1:4956974/70‑1 TAATATTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTATGCCGGATAGCCGCAAAGC > 1:3505300/1‑65 AATATTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTATGCCGGATAGCCGCAAAGCCAGACG < 1:263767/70‑1 AATATTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTATGCCGGATAGCCGCAAAGCCAGACG < 1:1761005/70‑1 ATATTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTATGCCG < 1:4031556/49‑1 TATTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTATGCCGGATAGCCGCAAAGCCAGACGCAT < 1:1126885/71‑1 TATTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTATGC < 1:2400764/46‑1 TATTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTT < 1:2336110/40‑1 TGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3784460‑3784385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaataTTGATGGTCGTGGCGGTGATCGTTATGGGACTGGTGTTGTATGCCGGATAGCCGCAAAGCCAGACGCAT > AP009048/3784405‑3784473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |