New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	3277473 =	52 (0.890)	5 (0.100)	4/90	NT	9.6%	coding (282/465 nt)	yhaV	conserved hypothetical protein
	?	AP009048	3277502 =	48 (0.930)					coding (311/465 nt)	yhaV	conserved hypothetical protein

GGTGCGCAGAGTGTTTTCATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGAAGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3277548‑3277473 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagagaAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTA  >  AP009048/3277502‑3277571                                                                                                                                                    GGTGCGCAGAGTGTTTTCATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGA                                                                             <  1:2573111/71‑1  GTGCGCAGAGTGTTTTCATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGAA                                                                            <  1:1277032/71‑1    GCGCAGAGTGTTTTCATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGAA                                                                            >  1:5208745/1‑69     CGCAGAGTGTTTTCATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGAAGA                                                                          <  1:2577089/70‑1     CGCAGAGTGTTTTCATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGAAGA                                                                          <  1:3223322/70‑1     CGCAGAGTGTTTTCATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGAA                                                                            >  1:640306/1‑68     CGCAGAGTGTTTTCATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGAA                                                                            >  1:4868427/1‑68     CGCAGAGTGTTTTAATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGAAGA                                                                          <  1:2184395/70‑1              TTTTCATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGAAGAGA                                                                        >  1:763306/1‑63               TTTCATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGAA                                                                            >  1:4805558/1‑58                                      ATGATGACTTTCTCTTTTTCACTATAACGAAAGAA                                                                            >  1:3454898/1‑35                                                TCTCTTTTTCACTATAACGAAAGAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGC                              >  1:3828547/1‑71                                                TCTCTTTTTCACTATAACGAAAGAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTG                               >  1:2485705/1‑70                                                TCTCTTTTTCACTATAACGAAAGAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTC                                 <  1:582623/68‑1                                                      TTTCACTATAACGAAAGAAGAGAAAGTCATCATTCTGGGATGGATGAACG                                             <  1:2075762/50‑1                                                         CACTATAACGAAAGAAGAGAAAGTCATCATTCTGGGATG                                                     >  1:3792488/1‑39                                                                       agGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTA                       <  1:3889702/53‑1                                                                        AGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGA        >  1:3769984/1‑69                                                                          AGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCC    <  1:4336835/71‑1                                                                           GAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCC    >  1:4464255/1‑70                                                                            AAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTA  <  1:1942563/71‑1                                                                            AAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAA            >  1:2220795/1‑61                                                                                                                                                    GGTGCGCAGAGTGTTTTCATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGAAGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3277548‑3277473 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagagaAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTA  >  AP009048/3277502‑3277571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.