| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AP009048 | 3,684,870 | C→T | 100% | pseudogene (189/582 nt) pseudogene (1252/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP009048 | 3,684,870 | 0 | C | T | 100.0% | 111.1 / NA | 38 | pseudogene (189/582 nt) pseudogene (1252/1645 nt) | ilvG ilvG | ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (13/25); total (13/25) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GGTGCCCAGCTCTTGCACATTCATCATGAAAGAGCCGTCACCGGAGATACAGACAACGGTATCGTTCGGTCGCGCGACTTGTGCGCCAACCGCCGCCGGTAAACCAAAACCCATGGTACCTAAACCGCTGGAGG > AP009048/3684804‑3684937 | ggTGCCCAGCTCTTGCACATTCATCATGAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTgg < 1:1741293/69‑1 (MQ=255) tGCCCAGCTCTTGCACATTCATCATGAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTcgc < 1:3079662/71‑1 (MQ=255) aGCTCTTGCACATTCATCATGAAAGAGCCGTCACCGGAGATACAGACGACGTTATCGTTTGGTCGCGCGAc < 1:2551685/71‑1 (MQ=255) aGCTCTTGCACATTCATCATGAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGAc > 1:1296544/1‑71 (MQ=255) aGCTCTTGCACATTCATCATGAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGAc < 1:1499237/71‑1 (MQ=255) ttGCACATTCATCATGAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTtg < 1:493307/69‑1 (MQ=255) tGCACATTCATCATGAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTcgc < 1:2307300/60‑1 (MQ=255) tGCACATTCATCATGAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTcg < 1:293479/59‑1 (MQ=255) gCACATTCATCATGAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTTgcgc > 1:3213881/1‑70 (MQ=255) gCACATTCATCATGAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTTGcgcg > 1:3289431/1‑71 (MQ=255) caTTCATCATGAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTTgcgcgc > 1:522398/1‑69 (MQ=255) tcatcaTGAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTcgcgcg > 1:3109925/1‑56 (MQ=255) tcatGAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGAc < 1:1616307/55‑1 (MQ=255) catGAAAGAGCCGTCACCGGAGATACACACGACGGTATCGTTTGGTcgc < 1:1166809/49‑1 (MQ=38) gAAAGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACt > 1:3536988/1‑52 (MQ=255) aaGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTtgcg < 1:966728/54‑3 (MQ=255) aaGAGCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTtgc < 1:2443583/53‑2 (MQ=255) agagCCGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTtg < 1:3355208/51‑1 (MQ=255) agCCGTCACCGGAGATACAGACGACGGTATCGTTTGGGcgcgcg < 1:361811/44‑1 (MQ=255) ccGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTtg < 1:2952770/47‑1 (MQ=255) ccGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCgg < 1:2870956/65‑1 (MQ=255) cGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGAc < 1:1412327/43‑1 (MQ=38) cGTCACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTTGCGCGCCAAccgcc < 1:609841/59‑1 (MQ=255) cACCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTAAACCaaaa > 1:4293296/1‑71 (MQ=255) aCCGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTAAACCAAAAc > 1:699388/1‑71 (MQ=255) ccGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTAAACCAAAAcc > 1:1242849/1‑71 (MQ=255) cGGAGATACAGACGACGGTATCGTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTAAACCAAAAcc > 1:1979605/1‑70 (MQ=255) gaTACAGACGACGGTATCGTTTGGTCGCGCGACTTGCGCGcc < 1:802628/42‑1 (MQ=37) tACAGACGACGGTATCGTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTaaa < 1:1181758/56‑1 (MQ=255) aaCAGACGACGGTATCGTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTAAACCaa < 1:573832/59‑1 (MQ=255) cAGACGACGGTATCGTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTAAACCAAAACCCATGGTGcc > 1:4090211/1‑71 (MQ=38) aGACGACGGTATCGTTTGGTCGCGCGACTTGCGCGCCAAcc < 1:1784896/41‑1 (MQ=37) aGACGACGGTATCGTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTAAACCa < 1:5202355/56‑1 (MQ=255) acgaCGGTATCGTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTAAACCAAAACCCATGGTGCCTa < 1:3681018/67‑1 (MQ=38) cgaCGGTATCGTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTaaa < 1:1102068/48‑1 (MQ=255) cGGTATCGTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTAAACCAAAACCCATGGTGCCTAAGcc > 1:4305965/1‑70 (MQ=38) gTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTAAACCAAAACCCATGGTGCCTAAGCCGCTGGAgg > 1:1050522/1‑71 (MQ=38) gTTTGGTCGCGCGACTTGCGCGCCAACCGCCGCCGGTAAACCAAAACCCATGGTGCCTAAGCCGCTGGAg < 1:920427/70‑1 (MQ=38) | GGTGCCCAGCTCTTGCACATTCATCATGAAAGAGCCGTCACCGGAGATACAGACAACGGTATCGTTCGGTCGCGCGACTTGTGCGCCAACCGCCGCCGGTAAACCAAAACCCATGGTACCTAAACCGCTGGAGG > AP009048/3684804‑3684937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |