| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3693350 | 0 (0.000) | 11 (0.210) | 7/92 | NT | 100% | noncoding (1524/1542 nt) | rrsC | 16S ribosomal RNA |
| ? | AP009048 | 4213165 = | NA (NA) | noncoding (1512/1542 nt) | rrsE | 16S ribosomal RNA | |||||
TTCACTTCCTATCAGACAATCTGTGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3693278‑3693350‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccgTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGT > AP009048/4213165‑4213234 TTCACTTCCTATCAGACAATCTGTGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCA < 1:4735324/69‑1 TCACTTCCTATCAGACAATCTGTGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACC > 1:4924522/1‑71 AATCTGTGTGAGCACTGCAAAGAACTCTTCTTTAAGGTAAGGAGGTGATCCAACCATAGGGGAACCTGCGG < 1:2674559/71‑1 TGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCGGTT < 1:4387357/67‑1 TGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCGGTT < 1:5305526/67‑1 AGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCA < 1:731105/42‑1 GCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCGGTT > 1:681042/1‑62 CTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCG < 1:2874744/56‑1 GCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACC > 1:4218235/1‑39 GCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCA < 1:1391863/36‑1 CAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCGGTTG > 1:1943673/1‑57 CAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACC > 1:1390565/1‑38 CAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAAC > 1:257453/1‑37 CAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAA > 1:5018373/1‑36 CAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAA > 1:5108973/1‑36 GAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAG > 1:883450/1‑38 ACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCGGTTG > 1:710879/1‑51 CGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCGGT < 1:5028090/48‑1 GCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCGGTT > 1:5186340/1‑48 GCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCGG < 1:1830497/46‑1 TTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCG < 1:5265081/43‑1 AACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACA > 1:3166860/1‑67 AACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACA > 1:3541929/1‑67 AACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACA > 1:3543821/1‑67 AACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACA > 1:476120/1‑67 AACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACA > 1:4303450/1‑67 AACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTG > 1:1584667/1‑56 AACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAA > 1:1807982/1‑43 AACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCT < 1:5036036/39‑1 ACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGAT > 1:4558797/1‑71 ACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGA < 1:4060827/70‑1 ACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGA < 1:3281385/70‑1 ACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCG > 1:4219522/1‑48 ACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAA > 1:3884330/1‑45 CCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATT < 1:4419969/71‑1 CCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATT > 1:3924092/1‑71 CCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATT < 1:2568690/71‑1 CCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATT < 1:673705/71‑1 CCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCA > 1:2603339/1‑56 CGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTG < 1:2772945/71‑1 CGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCA < 1:1967825/55‑1 CGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCG < 1:2488152/46‑1 CGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGC > 1:4920743/1‑45 CGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCATAAAGAAGCGTACTTTGCAGTGCTCACACAGATTG < 1:2610154/71‑1 GTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTCCTTTGC < 1:4307892/53‑1 GTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGT < 1:1421400/71‑1 GTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGT < 1:127399/71‑1 GTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTG > 1:101080/1‑70 TTCACTTCCTATCAGACAATCTGTGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3693278‑3693350‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccgTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGT > AP009048/4213165‑4213234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |