| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2926734 | 48 (0.820) | 4 (0.080) | 4/88 | NT | 8.5% | intergenic (+406/‑151) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter |
| ? | AP009048 | = 2926743 | 45 (0.890) | intergenic (+415/‑142) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter | |||||
ACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2926660‑2926734‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatacaCACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCCC < AP009048/2926743‑2926675 ACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAG < 1:3585225/70‑1 CAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAG < 1:1433752/69‑1 GAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATAC < 1:389605/71‑1 AGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACA > 1:3298633/1‑71 CGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACACACAAGT > 1:3240620/1‑71 TTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATAC < 1:2716368/61‑1 AATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGA < 1:4361710/51‑1 AATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGA < 1:3346523/51‑1 CCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACACACAAGTTATGTATCT > 1:972168/1‑61 CCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGA < 1:1036252/41‑1 GTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACACACAAGTTATGTAT > 1:1843028/1‑55 GAGATCAAGATCACTGATAGATACACACAAGTTATGTATC > 1:4974322/1‑40 AGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATT < 1:5363531/71‑1 AGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAA < 1:4691013/63‑1 GATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTA < 1:1348141/71‑1 ATACACACAAGATATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTAT > 1:2123846/1‑71 ACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCC > 1:3632423/1‑71 ACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGAT < 1:1222617/66‑1 CACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCCC < 1:1524863/71‑1 CACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCCC < 1:4418972/71‑1 CACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCC > 1:4886671/1‑70 ACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCCC > 1:1159183/1‑70 ACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2926660‑2926734‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatacaCACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCCC < AP009048/2926743‑2926675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |