| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2971656 = | 65 (1.110) | 4 (0.080) | 3/92 | NT | 6.3% | coding (863/1194 nt) | ygeD | predicted inner membrane protein |
| ? | AP009048 | 2971686 = | 61 (1.160) | coding (833/1194 nt) | ygeD | predicted inner membrane protein | |||||
TTGGTATCGTGGTTGGCGCAGGTGCGGCAGCGAAGTTAGTTACGCTGGAAACCGTGTCACGCTGTATGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2971728‑2971656‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAGGT > AP009048/2971686‑2971753 TTGGTATCGTGGTTGGCGCAGGTGCGGCAGCGAAGTTAGTTACGCTGGAAACCGTGTCACGCTGTATGCCA < 1:784586/71‑1TTGGTATCGTGGTTGGCGCAGGTGCGGCAGCGAAGTTAGTTACGCTGGAAACCGTGTCACGCTGTATGC < 1:5091168/69‑1 TGGTATCGTGGTTGGCGCAGGTGCGGCAGCGAAGTTAGTTACGCTGGAAACCGTGTCACGCTGTATGCCA < 1:672471/70‑1 GGTATCGTGGTTGGCGCAGGTGCGGCAGCGAAGTTAGTTACGCTGGAAACCGTGTCACGCTGTATGCCAG < 1:1093681/70‑1 GTATCGTGGTTGGCGCAGGTGCGGCAGCGAAGTTAGTTACGCTGGAAACCGTGTCACGCTGTATGCCAGC < 1:606586/70‑1 GGCGCAGGTGCGGCAGCGAAGTTAGTTACGCTGGAAACCGTGTCACGCTGTATGCCAGC > 1:2589905/1‑59 GCTGGAAACCGTGTCACGCTGTATGCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATAC > 1:3061685/1‑70 GCTGGAAACCGTGTCACGCTGTATGCCAGCGTAACTAACTTCGCTGCC > 1:4321385/1‑48 CTGGAAACCGTGTCACGCTGTATGCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCA < 1:5168080/71‑1 TGGAAACCGTGTCACGCTGTATGCCAGCGTAACTAACTTCGCTGCCGCA < 1:4461234/49‑1 CCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAG > 1:3116829/1‑71 CCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATA < 1:3935562/70‑1 CCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGA < 1:155774/66‑1 CAGCGTAACTAACTTCGCTGCCGCCCCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAGG > 1:5299172/1‑71 CAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAGG < 1:4484497/71‑1 CAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAGG > 1:233336/1‑71 CAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCG < 1:1612677/59‑1 CAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCAC < 1:836097/39‑1 CAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAAC < 1:341238/36‑1 AGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAGGT < 1:2742177/71‑1 TTGGTATCGTGGTTGGCGCAGGTGCGGCAGCGAAGTTAGTTACGCTGGAAACCGTGTCACGCTGTATGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2971728‑2971656‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAGGT > AP009048/2971686‑2971753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |