| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1557684 = | 54 (0.920) | 3 (0.060) | 3/94 | NT | 5.6% | intergenic (‑7/+95) | sra/bdm | 30S ribosomal subunit protein S22/biofilm‑dependent modulation protein |
| ? | AP009048 | 1557712 = | 52 (0.960) | intergenic (‑35/+67) | sra/bdm | 30S ribosomal subunit protein S22/biofilm‑dependent modulation protein | |||||
TAATTTAGGGGTTTAGCACGTGTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1557755‑1557684‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggaCAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTT > AP009048/1557712‑1557780 TAATTTAGGGGTTTAGCACGTGTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGAG > 1:3191358/1‑70 AATTTAGGGGTTTAGCACGTGTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGAG > 1:5095792/1‑69 AATTTAGGGGTTTAGCACGTGTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGAG > 1:4232168/1‑69 AATTTAGGGGTTTAGCACGTGTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGAG > 1:3470540/1‑69 AATTTAGGGGTTTAGCACGTGTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGAG > 1:3403448/1‑69 TTTAGCACGTGTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGAGGA > 1:1351769/1‑61 GCACGTGTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGA > 1:1207450/1‑54 GCACGTGTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGA > 1:4550361/1‑54 GCAAGTGTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGA > 1:1271608/1‑54 GTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGA > 1:4220109/1‑48 TTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGA > 1:2053037/1‑47 TTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGA > 1:1333662/1‑47 TCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGA > 1:659062/1‑45 CGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGAG > 1:2072488/1‑42 CCTTAAAACTAGCTACAGGATTGAGGACAACATCG > 1:2964734/1‑35 AAAACTAGCTACAGGATTGAGGACAACATCGCCGTAGCGAAGAAACACGTG > 1:3211300/1‑51 ACTAGCTACAGGATTGAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCC < 1:3124550/71‑1 GGACAACATCGCCTTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCT < 1:4256869/71‑1 GGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCT < 1:865607/71‑1 GACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTT < 1:2209194/71‑1 GACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGAATAGCACCTT < 1:3581122/71‑1 GACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGG < 1:863224/48‑1 TAATTTAGGGGTTTAGCACGTGTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1557755‑1557684‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggaCAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTT > AP009048/1557712‑1557780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |