mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 75 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 202,485 | 0 | T | . | 76.4% | 790.0 / inf | 582 | intergenic (+263/‑412) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 437,880 | 1 | . | A | 63.9% | 1842.3 / inf | 881 | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 437,880 | 2 | . | T | 63.9% | 1914.9 / inf | 881 | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 203,895 | 1 | . | T | 61.4% | inf / inf | 1206 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 165,250 | 0 | T | . | 60.3% | 971.7 / inf | 2257 | intergenic (+214/‑328) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 202,486 | 0 | T | . | 60.2% | 272.7 / inf | 580 | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,494 | 0 | A | T | 55.2% | 61.7 / inf | 589 | intergenic (+272/‑403) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 105,339 | 0 | T | G | 53.1% | 1862.6 / inf | 1969 | intergenic (+834/+92) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 420,253 | 0 | C | A | 45.1% | 2003.5 / inf | 2506 | intergenic (‑536/+307) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 437,880 | 4 | . | T | 43.1% | 137.7 / inf | 881 | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 437,880 | 3 | . | A | 43.0% | 143.3 / inf | 881 | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 202,477 | 0 | C | A | 41.4% | 731.6 / inf | 809 | intergenic (+255/‑420) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,912 | 0 | G | T | 40.6% | 1675.8 / inf | 1467 | intergenic (+296/+162) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,481 | 0 | C | A | 36.4% | 636.3 / 100.2 | 652 | intergenic (+259/‑416) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,937 | 0 | C | A | 35.9% | 2629.2 / 277.2 | 1769 | intergenic (+321/+137) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 165,303 | 0 | C | A | 35.5% | 4889.3 / inf | 2847 | intergenic (+267/‑275) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 203,952 | 0 | C | A | 33.7% | 3112.2 / inf | 1867 | intergenic (+336/+122) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 165,311 | 0 | C | A | 32.6% | 5475.7 / inf | 2876 | intergenic (+275/‑267) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 420,271 | 0 | G | T | 32.5% | 3676.6 / inf | 2405 | intergenic (‑554/+289) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 203,946 | 0 | C | A | 32.3% | 3208.8 / 278.0 | 1848 | intergenic (+330/+128) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| Marginal new junction evidence (lowest skew 10 of 183 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | = 437880 | 280 (0.100) | 1138 (0.320) +ATAT |
177/188 | 3.8 | 73.3% | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437881 = | 497 (0.140) | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 437881 = | 704 (0.190) | 1215 (0.410) | 186/204 | 6.5 | 72.0% | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437884 | 375 (0.130) | intergenic (‑188/+234) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | = 437880 | 401 (0.140) | 1014 (0.290) +ATATAT |
120/184 | 27.8 | 65.3% | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437881 = | 618 (0.170) | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 437881 = | 873 (0.240) | 1047 (0.350) | 136/208 | 28.7 | 61.6% | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437886 | 584 (0.190) | intergenic (‑190/+232) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 165253 = | 2471 (0.680) | 365 (0.110) | 125/220 | 36.6 | 14.8% | intergenic (+217/‑325) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | = 165249 | 2029 (0.640) | intergenic (+213/‑329) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | = 203895 | 843 (0.260) | 530 (0.150) +TTT |
107/214 | 42.4 | 36.1% | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| ? | CP016816 | 203896 = | 955 (0.260) | intergenic (+280/+178) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase | |||||
| * | ? | CP016816 | = 202486 | 212 (0.060) | 525 (0.140) | 100/252 | 54.4 | 68.6% | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| ? | CP016816 | 202490 = | 269 (0.070) | intergenic (+268/‑407) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein | |||||
| * | ? | CP016816 | = 143769 | 4160 (1.140) | 231 (0.070) | 82/226 | 56.6 | 5.8% | intergenic (+28/‑134) | JCVSYN2_00565/JCVSYN2_00570 | acetate kinase/phosphoenolpyruvate‑‑protein phosphotransferase |
| ? | CP016816 | = 143772 | 3772 (1.150) | intergenic (+31/‑131) | JCVSYN2_00565/JCVSYN2_00570 | acetate kinase/phosphoenolpyruvate‑‑protein phosphotransferase | |||||
| * | ? | CP016816 | 496355 = | 4154 (1.140) | 212 (0.060) | 84/232 | 57.0 | 5.4% | intergenic (‑55/+29) | JCVSYN2_02275/JCVSYN2_02280 | HPr(Ser) kinase/phosphatase/ECF transporter S component |
| ? | CP016816 | 496379 = | 3670 (1.090) | intergenic (‑79/+5) | JCVSYN2_02275/JCVSYN2_02280 | HPr(Ser) kinase/phosphatase/ECF transporter S component | |||||
| * | ? | CP016816 | 131178 = | 3331 (0.910) | 91 (0.030) | 68/200 | 57.2 | 3.0% | intergenic (+4/+96) | JCVSYN2_00525/JCVSYN2_00530 | hypoxanthine phosphoribosyltransferase/glycerol kinase |
| ? | CP016816 | 131204 = | 3303 (1.140) | intergenic (+30/+70) | JCVSYN2_00525/JCVSYN2_00530 | hypoxanthine phosphoribosyltransferase/glycerol kinase | |||||