BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	437881 =	704 (0.190)	1215 (0.410)	186/204	6.5	72.0%	intergenic (‑185/+237)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
*	?	CP016816	= 437884	375 (0.130)	1215 (0.410)	186/204	6.5	72.0%	intergenic (‑188/+234)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1699 total aligned reads displayed.

ACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATT  >  CP016816/437757‑438011

 cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atata                                                                                                                                          >  1:292349/1‑128 (MQ=255)

  ttATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatat                                                                                                                                         >  1:3114652/1‑128 (MQ=255)

     tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATTAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑a                                                                                                                                    >  1:7490491/1‑128 (MQ=255)

     tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACATCCATATTACATATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑a                                                                                                                                    >  2:7755666/1‑128 (MQ=255)

     tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑a                                                                                                                                    >  2:2601904/1‑128 (MQ=255)

      ttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑at                                                                                                                                   >  1:6740635/1‑128 (MQ=255)

         tGTAGTTGTAAGTATCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTAAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑a                                                                                                                            <  2:1266698/128‑1 (MQ=255)

          gTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑at                                                                                                                           >  1:496567/1‑128 (MQ=255)

                gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑T‑‑‑‑‑‑ctatataa‑‑atat‑‑‑‑atatatat                                                                                                                     >  2:5099464/1‑128 (MQ=255)

                 tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatata                                                                                                                    >  2:4001179/1‑128 (MQ=255)

                   atttttATTTTTTAAAAATATTAGAAATATAATTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatata                                                                                                                  <  1:4122886/126‑1 (MQ=255)

                      ttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatat                                                                                                               >  2:7451345/1‑128 (MQ=255)

                      ttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatat                                                                                                               >  1:663288/1‑128 (MQ=255)

                       taaTTTTTAATATATATTATATATATAAATTTTATTTTTAAAATAAATATTTTTGTATATTAATCAAATATAAAAACTCAATATTAACTATATAG‑‑‑TTT‑‑‑AA‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata                                                                                                              <  2:1934/126‑1 (MQ=255)

                       tCATTTTTAATATATATTAGATATAAAAATTTTATTTTTAAAATAAATATTTTAGGAAATTAAGAAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata                                                                                                              <  2:6772976/128‑1 (MQ=255)

                        taTTTTTAATAAATATTATATATAAAAATTTTATTTTTAAAATATATATTTTATTATATGAATAAAATAAAAAAAATCTATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑T‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑t                                                                                                           <  2:6262144/127‑1 (MQ=255)

                        cATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑t                                                                                                           >  2:4547563/1‑128 (MQ=255)

                         aTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATTAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑ATA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑ta                                                                                                          <  2:5383367/128‑2 (MQ=255)

                         aTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑ta                                                                                                          <  2:2919503/128‑2 (MQ=255)

                          tttttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGAAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tat                                                                                                         >  2:3512814/1‑126 (MQ=255)

                           tttaAATAAATATAATATAAAAAAATTGTTTATTTATAATAAATATATTATAAAATTAATAAAATAACAAAACTCAATATAAAATATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tata                                                                                                        <  2:5746630/128‑4 (MQ=255)

                            tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tatgc                                                                                                       >  2:7634081/1‑124 (MQ=255)

                             ttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tattta                                                                                                      >  1:917493/1‑123 (MQ=255)

                              ttataaataTTAGAAATAAAAATTGTTTTTTTAAAATAAATATTTTATTAAATGAAGCAAAGCAAAAAAATCCATATTACATATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tatatat                                                                                                     <  1:539686/126‑7 (MQ=255)

                               aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTACATATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tattatag                                                                                                    >  1:4776911/1‑121 (MQ=255)

                               aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑T‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tatataaa                                                                                                    >  2:1384738/1‑121 (MQ=255)

                               aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑attt‑‑‑‑atatatatatatata‑‑tatatgaa                                                                                                    >  1:5555140/1‑121 (MQ=255)

                               aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tatatgca                                                                                                    >  1:6398837/1‑121 (MQ=255)

                               aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tataagaa                                                                                                    >  1:129374/1‑121 (MQ=255)

                               aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tatattca                                                                                                    >  2:3340946/1‑121 (MQ=255)

                                 taaataTTATATATAAAAAATTTATTTTTAAAAAATATATTTTATTAAAATAATAAAACAAAAAACATCCATATAAAATATAGAG‑‑‑ATA‑‑‑AA‑‑‑‑T‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tatatgcaag                                                                                                  <  2:2433666/128‑10 (MQ=255)

                                 taaataTTATAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATTAATCAAAGCAAAAACATCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGAt                                                                                                <  2:7331191/128‑1 (MQ=255)

                                   aataTTAGATATAAAAATTTTATTTTTTAAATAAATATATTAGTAAATGAAGAAAATAAAAAAACTCTATATTAAATATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑T‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tcattaactcta                                                                                                <  1:227379/128‑12 (MQ=19)

                                   aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAACCCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GATAGCGATCa                                                                                              >  1:7762920/1‑128 (MQ=255)

                                   aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑TT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tatattaaagat                                                                                                >  1:3284551/1‑117 (MQ=255)

                                   aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑atatatat‑‑atat‑‑‑‑atatatatatatata‑‑tatatatgcaag                                                                                                >  2:5839716/1‑117 (MQ=255)

                                       ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GAT‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGc                                                                                            >  2:3130172/1‑128 (MQ=255)

                                        tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATa                                                                                         <  2:4803384/128‑1 (MQ=255)

                                          taaaTAAAATTATTTTTTTTAATATAAATATATTAGTATAATAAGCAAAGAAAAAAACAACATATTAACTATATAG‑‑‑TTA‑‑‑ATTA‑‑T‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATa                                                                                         <  1:400622/127‑1 (MQ=255)

                                          taaaTAAAAATTTTATTTATAAAAAAAATATTTTATCAAATAAACAAAAACAAAAAACACAATATTAACTATAGAG‑‑‑ATA‑‑‑AT‑‑‑‑‑‑‑‑‑‑‑‑TATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAAt                                                                                     <  2:3047577/127‑1 (MQ=255)

                                          taaaTAAAAATTGTATTTTTAAAATAAATATTTTATTATATTAATAAAATAAAAAAACTATATATTAACTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCa                                                                                           <  2:6930238/127‑1 (MQ=255)

                                           aaaTAAAAATTGTAGTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATACATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATaa                                                                                        <  2:2342454/128‑1 (MQ=255)

                                            aaaaaaaaTTGTATTTTTAAAATATATATTTTATAAAAATAATAACATATAAAATATCTATATTAAATATATAG‑‑‑TTATTTATA‑‑‑T‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATa                                                                                         <  2:5248291/125‑1 (MQ=255)

                                             aTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATTTATATATA‑‑T‑‑TCAAGCGATCAGCATAAAAta                                                                                    >  2:387538/1‑127 (MQ=255)

                                               aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAATCAAGCAAAGCAAAAACCTCAATATTACCTATAGAG‑‑‑TTA‑‑‑AA‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATaaaa                                                                                      <  2:6610521/128‑1 (MQ=255)

                                                  aaTTGTATTTTTTAAATAAATATATTATTAAATTAATCAAATCAAAAAACTACATATTACATATAGAG‑‑‑TTA‑‑‑TTTA‑‑T‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTg                                                                                 <  1:5121542/128‑1 (MQ=255)

                                                        aTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GAAAGCGATCAGCATAAAATTGTTAAAt                                                                             >  2:6391643/1‑128 (MQ=255)

                                                          ttttAAAATAAATATTTTATTAAATGAAGCAAATCAAAAACCTAAATATTATCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCt                                                                     <  1:6094371/128‑1 (MQ=255)

                                                          ttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATATATATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCATCATAAAATGGTGatat                                                                             >  1:181996/1‑128 (MQ=255)

                                                            ttAAAATAATTATTTTAGTAAATGAAGAAAAGCAAAAACATCTATATAAACAATAGAG‑‑‑ATA‑‑‑AA‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAg                                                                         <  1:2667404/128‑1 (MQ=255)

                                                             tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑TCAAGAGATCAGCATAAAATGGTTAATTATAGa                                                                        >  1:5850151/1‑128 (MQ=255)

                                                               aaataaatATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GAT‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GAAAGCGATCAGAAAAAAATGGTGAAATTTAGATATg                                                                    >  1:2076070/1‑128 (MQ=255)

                                                                 ataaaaaTTTTATTAAATTACACAAATAAAAAAACTCTATATAAACTATAGAG‑‑‑ATATATATA‑‑‑T‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTg                                                                    <  1:3713182/128‑1 (MQ=255)

                                                                  taaataTTTTATTAAATGAAGATAATAAAAAAAATCTATATAAACTATATAG‑‑‑TTT‑‑‑AA‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGa                                                                   <  2:4369672/128‑1 (MQ=255)

                                                                  taaataTTTTAGTAAATGAATCAAATCAAAAAACTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGa                                                                   <  2:6524203/128‑1 (MQ=255)

                                                                  taaataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGAATAAAATGGTGAAATTTAGATCTGa                                                                   >  1:428526/1‑128 (MQ=255)

                                                                      tatTTTATTAAATGAATCTAAGCAAAAACCTCCATATAACATATAGAG‑‑‑ATA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTg                                                               <  1:4687398/128‑1 (MQ=255)

                                                                      aatTTTAGGCTATTAATCAAATAAAAAAACTAAATATTAACTATAGAGATATTT‑‑‑ATA‑‑‑T‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTg                                                               <  2:7067216/127‑1 (MQ=255)

                                                                        ttttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGATTTgtt                                                             >  2:2799479/1‑126 (MQ=255)

                                                                         tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                        >  1:2804489/1‑128 (MQ=255)

                                                                            cttaatatattcaaatcaaaAAACTCAATATTAACTATATAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GTAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTa                                                         <  2:1067465/117‑1 (MQ=255)

                                                                              gAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGGG‑‑‑TTA‑‑‑AT‑‑‑‑GATATATATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑TCAATCTATCAGCATAAAATGGTGATATTTATATCTTATTTGGTCTTa                                                         >  1:447480/1‑128 (MQ=255)

                                                                                      tcaaataaaaaaaCTCTATATTACCTATAGAG‑‑‑TTA‑‑‑TA‑‑‑‑GAT‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttt                                             <  2:1594070/121‑1 (MQ=255)

                                                                                      gcaaagcaaaAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATATTT‑‑GCAAGCGATCATCATAAAATAGTGAAATTTATATCTGAGTTGGTCTTatatattttttta                                             >  1:3453188/1‑119 (MQ=255)

                                                                                      gcaaagcaaaAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑‑‑‑‑ATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGAACAAAATAAAATTTTGAAATTTAGATATTAGTTGGTCTTAAATTTGTATTTtttattt                                       >  1:3854215/1‑128 (MQ=255)

                                                                                        aaagcaaaAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGAATAAAATTGTGAAATTTAGATCTGAGTTGGTATTAAATTTGTAGttt                                             >  1:194303/1‑128 (MQ=255)

                                                                                        aaagcaaaAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑TAAGCAAGAGATAATAATAAAATAGATATATTTAGATCAGAGTTTTTATTAAAttattattttat                                           >  2:4947083/1‑118 (MQ=255)

                                                                                        aaagaaaaAACCTCCATATTAACTATAGAG‑‑‑TTA‑‑‑TT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGAGCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttt                                             <  2:2008772/128‑1 (MQ=255)

                                                                                            caaaAAACTCCATATAAACTATAGAT‑‑‑TTA‑‑‑TTTA‑‑T‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattt                                       <  1:7874199/128‑1 (MQ=255)

                                                                                             aaaaaaCTCCATATTACCTATAGAG‑‑‑ATT‑‑‑AT‑‑‑‑GATATATATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                          <  2:2700692/128‑1 (MQ=255)

                                                                                              aaaaCCTCTATATAAAATATAGAG‑‑‑TTA‑‑‑ATTATAT‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattt                                       <  1:7611803/128‑1 (MQ=255)

                                                                                               aaaCCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCTAGCGATCAGAATAATATTGTGAAATTTAGATCTGAGTTTGTATTAAATTTGTTGTTtttattta                                      >  1:1014028/1‑128 (MQ=255)

                                                                                               aaaCCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattta                                      >  2:5509904/1‑128 (MQ=255)

                                                                                                aaaatctatatTAAATATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑T‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGtt                                 <  1:6214097/121‑1 (MQ=255)

                                                                                                aaCCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCATCATAAAATTGTGAAATTTAGATCTGAGTTTGTCTTAAATTTGTATTTTttttttat                                     >  1:253178/1‑128 (MQ=255)

                                                                                                aaCCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTttatttat                                     >  2:373271/1‑128 (MQ=255)

                                                                                                  ccTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGCTCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                             >  2:1781019/1‑128 (MQ=255)

                                                                                                    tCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑ACAAGCGATCAGCAAAAAATGTAAAAATATATATCTGAGTTGGTCTAATATATTTATATTTTATTTATAGATtata                             >  1:5256690/1‑128 (MQ=255)

                                                                                                     aaatatTAAATATAGAG‑‑‑ATA‑‑‑ATTA‑‑T‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                              <  2:7863429/126‑1 (MQ=255)

                                                                                                       atatAAACTATATAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATAT‑‑ATATATAAATATATATATATATA‑‑T‑‑GAAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTT‑TAGTTTTTATTTATAGTTtata                             <  1:5693914/128‑1 (MQ=255)

                                                                                                        tatTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATAAA‑‑A‑‑CCAAGCTATCAACAAAAAATTATAAAATTTATATATTATTATATATTAAATTTATAATATATATTTATAATTTATaaata                         >  2:4673421/1‑126 (MQ=255)

                                                                                                          ttACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATTGTTAAATTTATATCTGAGTTTGTATTAAATTTGTAGTTTTTATTTATAGTTTATaaa                           >  1:6990896/1‑128 (MQ=255)

                                                                                                           tACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑GATAT‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑TCAAGCTATCAGCAAAAAATAGTGAAATTTAGATCTGAGTTGGTCTTATATTTTTAGTATTTTTTTATAGTTTATaaat                          >  1:6850104/1‑127 (MQ=255)

                                                                                                           aaaatatataG‑‑‑ATT‑‑‑AT‑‑‑‑T‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                      <  1:1109000/124‑1 (MQ=255)

                                                                                                                                aatgatatatatatatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GAAAGCGATAAGAATAAAATTGTGAAATATATATCTGAGTTGTTATTATATTTTTATTTTTTATTTATAGTTTATAAATTTAATAAtt                 >  2:867220/13‑128 (MQ=21)

                                                                                                                                 taatgatatatatatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAAttt                <  2:5646940/117‑1 (MQ=255)

                                                                                                                                  ttaatgatatatatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa               <  2:6123309/118‑1 (MQ=255)

                                                                                                                                    aatgatatatatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTTTAGTTTTTATTTATAGTTTATAAATTTAATAATTTAGa             >  2:6039614/9‑128 (MQ=39)

                                                                                                                                      tgatatatatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtt           <  1:5925358/122‑1 (MQ=255)

                                                                                                                                       tatatatatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGAGATCAGCATAAAATGGTGTAATTTAGATCTGAGTTTGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAttt          <  1:6511255/123‑1 (MQ=255)

                                                                                                                                         tatatatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GATAGCTATCATAATAAAATTGTTATTTTTATATCTGAGTTTGTATTAAATTTGTATTTTTTATTTATTTTTTATATAGTTAATTATTTATAttttt        >  2:4201366/4‑128 (MQ=255)

                                                                                                                                          atatatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGCTCTCAGCATAAAATGGTTAAATTTATATCTGAGTTTGTCTTAAATTTTTAGTTTTTATTTATATTTTATAAATTTAATATTATATATTTTTa       >  1:712196/3‑128 (MQ=255)

                                                                                                                                          atatatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGCGATCAACAAAAAATTGTTATATTTATATCTGAGTTGTTCTTAAATTTTTATTTTTTATTTATAGTTTATATATTTAATAATATATATTTTTa       >  1:7375327/3‑128 (MQ=255)

                                                                                                                                           tatatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTaa      <  1:1636972/127‑1 (MQ=255)

                                                                                                                                            atatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAat     <  2:218303/128‑1 (MQ=255)

                                                                                                                                            atatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGCGATCAGAATAAAATGGTGAATTTTAGATGTGAGTTGCTCTTAAATTTTTTGTTTTTATATATATTTTATAAAGTTATTATTATAGATTTTTAat     >  1:355387/1‑128 (MQ=255)

                                                                                                                                             tatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGCGATCAGCATAAAATGGTGATATTTAGATCTGAGTTGGTCTTATATTTGTAGTTTTTATTTATAGTTTATATAGTTTATAATTTAGATTTTTAata    >  2:3642086/1‑128 (MQ=255)

                                                                                                                                             tatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGCGATCAGCATAAAATGGTGATATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAata    >  2:1168034/1‑128 (MQ=255)

                                                                                                                                             tatatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGAGATCAGCATAAAATGGTGAAATTTAGATATGAGTTGGTCTTAAATTTTTATTTTTTATTTATAGTTTATAAATTTAATAATATATATTTataata    >  1:1468655/1‑128 (MQ=255)

                                                                                                                                              atatat‑‑atat‑‑‑‑atatatatatatata‑‑t‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAatat   <  1:2390051/128‑1 (MQ=255)

ACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑‑AT‑‑‑‑G‑‑‑‑‑‑ATATATAT‑‑ATAT‑‑‑‑ATATATATATATATA‑‑T‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATT  >  CP016816/437757‑438011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.