Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9370CA35.9% 2629.2 / 277.2 1769intergenic (+321/+137)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (521/574);  new base A (493/121);  total (1036/733)
Fisher's exact test for biased strand distribution p-value = 1.06e-41
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1794 total aligned reads displayed.

AGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203810‑204064
                                                                                                                                       |                                                                                                                                  
 gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAATTTAATTTTGGATc                                                                                                                                    >  1:613510/1‑128 (MQ=255)
    aTTTTTAAAAATCCCAATTATCTAGGTTATTTATTATACATATCAACATTACAACTATTTAAAATTGTATTTTTTTTGA‑‑‑T‑‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCaa                                                                                                                              <  1:5017090/128‑1 (MQ=255)
    aTTTTTAAAAAAGGCTATGTTCTAGTCTTTTTATTATACTTATAAACATTACAACGCTTTCAAACTTTATTTTTTTGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAAcc                                                                                                                                <  2:6471868/128‑1 (MQ=255)
         tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAAAAAAGTATGATTTGGAGCAACCaaa                                                                                                                             >  2:2295952/1‑128 (MQ=255)
          aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAc                                                                                                                           >  2:1198156/1‑128 (MQ=255)
                gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑TAAAATTAAATTAATAATTGTATCAACAAAAACtataaa                                                                                                                     >  1:1538537/1‑126 (MQ=255)
                gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAATTTTTGGTAAAACAAAAACttataa                                                                                                                     >  1:4373714/1‑123 (MQ=255)
                    aTGTTCTATGCTTTTTATTATACTTATCAAAATTACAAAGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑Caaa‑aa                                                                                                             <  2:6645165/128‑1 (MQ=255)
                     gaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAATTAAAATTAAGTTTTTGATAAAACAAAACTAT‑‑T‑Aaaa‑aaa                                                                                                            >  2:6522932/6‑128 (MQ=255)
                       acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAAAATTTTGAACAACCAAAACTAaa‑a‑aaaa‑aaa                                                                                                            >  1:860363/4‑128 (MQ=255)
                       acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAAGTAATATTTTGAAAAAACAAAAATATT‑A‑aaaa‑aaaa                                                                                                           >  1:1926959/4‑128 (MQ=255)
                          tAGGCTTTTTATTATACTTATCAACATTACTACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAAGTAAGATTTTGTTAAACCAAAACAATA‑T‑AAAA‑AATATTaa                                                                                                       >  2:3166553/1‑128 (MQ=255)
                          tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAAGTTAAATTTTGATAAAACAATAATATT‑A‑TAAA‑AAAATTa                                                                                                        >  2:4928635/1‑128 (MQ=255)
                           aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAATATTTGTTTAAACCAAAACTATA‑T‑CAAA‑AAAATTaa                                                                                                       >  1:5994600/1‑128 (MQ=255)
                            ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAATATTTGGTTAAAAAAAAAATAT‑‑T‑AAAA‑AAAATTtaa                                                                                                      >  1:5657425/1‑128 (MQ=255)
                                 tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAATATTTGTTTAAACAAAAAC‑ATA‑T‑TAAATAAAATTtaaaaaa                                                                                                  >  2:6061217/1‑128 (MQ=255)
                                  ttattaTAATTATCAACATTAAAACTCTTTCAAATTTTATTTTTTTGGG‑‑‑TTGTTT‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTaaaaaaa                                                                                                  <  1:6312939/128‑1 (MQ=255)
                                     ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGTTTTTTTTTTTTTTTTTTTTGT‑AAAAAAAAAAATATCATTTATAACAACAAAAAATTAA‑T‑AAAA‑AAAATAAAAAAAAAt                                                                                                >  2:2841994/1‑128 (MQ=255)
                                     ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAAAAAATTAAAATTTTGTTCAACCAAAAATATA‑A‑AAAA‑AAAATTaaaaaaaaaat                                                                                              >  1:350944/1‑125 (MQ=255)
                                     ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAATTTAAATTTTAGAACAACCAAAAAAAaa‑t‑aaaa‑aaaaataaaaaaataatt                                                                                             >  2:3727683/1‑123 (MQ=255)
                                      tataATAATCAACATTTAAACGATTTAAAAGTGTTTTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAAtagtt                                                                                            <  2:5966402/128‑1 (MQ=255)
                                         aCTTATCAACATTACGACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑TAAAATAAAATTTTGTTTTTGTTAAAACAAAAAATTA‑A‑AAAA‑AAAATTAAAAAAAAaatttttt                                                                                         >  2:7327605/1‑126 (MQ=255)
                                          cTTATCTAAATTACAAGTCTTTCAAATTGTTTTTTTTTGGT‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAAtagtttagt                                                                                        <  1:5895705/128‑1 (MQ=255)
                                          cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAAAATTTTGGTAAACCAAAAATTTA‑T‑AAAA‑AAAATTAAAAAAAAtattttaga                                                                                        >  2:6326110/1‑127 (MQ=255)
                                          cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAAAAAAAATTAAATTTTGTAAAACCAAAAATATA‑t‑aaaa‑aaaattaaaaaaaattatttttt                                                                                        >  2:3032370/1‑120 (MQ=255)
                                            tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAATTTAAAATTTTGATAAACAAAAAATATA‑T‑AAAA‑AAAATTAAAAAAAAtattttattta                                                                                      >  2:135806/1‑127 (MQ=255)
                                             aTCAACATTACAACGCTTTCAAATTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAATAAAATTTTGGAT‑AAACAAAACAATA‑TACTAA‑AAAATATAAAAAAAttcttatctagc                                                                                     >  1:7375914/1‑117 (MQ=255)
                                             aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAAAAAAATTAATATTTTTAAAAACAAAAAATAAA‑T‑AAAA‑AAAAATAAAAAAAAaattttatttta                                                                                     >  1:2301874/1‑126 (MQ=255)
                                                 aCATTACAACGCTTTCAAAGTGTATTTTTTAGGCTAGTTT‑‑‑‑TTTTTTTTTTTTTTTTTT‑TAAAATAAAAATAATTTTTGGATAAAAAAAAAATATT‑A‑CAAA‑AAATTTAAAAAAAAtatttttatttatt                                                                                   >  2:3445917/1‑120 (MQ=255)
                                                 aCATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAAAAAAATAAAAAATTGGATAAACAAAAAAAATA‑A‑AAAA‑AAATTAAAAAAAAATATTTAATTTGAtttt                                                                                 >  1:4050883/1‑128 (MQ=255)
                                                  cATTACAACGCTTTCAAAGTGTATTTTTTAGTC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAATAAATTAAGAATTTGAAAAACCAAAAGAATT‑T‑AAAA‑AAAATTAAAAAAAATATTTTTGTTGTGttt                                                                                 >  2:1545400/1‑128 (MQ=255)
                                                    tttaaaCGTTTTTAATTTGTATTTTTTTGGT‑‑‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt                                                                            <  1:2998307/124‑1 (MQ=255)
                                                              ttCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑TAAAATAAAAGTAAGATTTGGATAAACCAAAAATATA‑A‑AAAA‑AAAATTAAAAAAAATAGTTTTTTTTAGTTACAAAtattcaaat                                                                    >  2:7495470/1‑120 (MQ=255)
                                                              ttCAAAGTGTATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAAATAAAATTTTTATCAA‑AAAAAAAATATT‑AAAA‑AAAAATAAAAAAAAAATTTTTATTGAGTATAAAATATTCatat                                                                    >  2:5836437/1‑128 (MQ=255)
                                                               tCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAAGTAATATTTGGATAAACCAAAACTATA‑T‑AAAA‑AAAATTAAAAAAAATATTTTATTTTATTTTAAAATATGAattta                                                                   >  1:484838/1‑128 (MQ=255)
                                                               tCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAATTTAAGATTTGTATAAAAAAAAAAAAAA‑T‑AAAA‑AAAATTAAAAAAAATAATTTAATTTAGTTTAAAAtaggaattta                                                                   >  1:7915529/1‑119 (MQ=255)
                                                               tCAAAGTGTATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCATAACTATT‑A‑CAAA‑AAAATTAAAAAAAATATTTTAGTTGACTTTCAAATCTTCatatat                                                                  >  2:4034467/1‑128 (MQ=255)
                                                                  aattgtTTTTTTTATGC‑‑‑TTG‑‑‑‑‑‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAc                                                             <  1:6684923/125‑1 (MQ=255)
                                                                   aGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAAGAAAGAATTGGAACAACCAAAACAATA‑A‑AAAA‑AAAATTAAAAAAAAATGTTTAGTAGACTTTCAAAAAGGCAaatataat                                                               >  2:7725703/1‑126 (MQ=255)
                                                                   aGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAAAAAAATTAATATTTGGATAAACCAAAACTTTA‑T‑AAAA‑AAAATTAAAAAAAATATTTATGTTTATTTTAAAAAATGAAaatatata                                                               >  2:6713901/1‑126 (MQ=255)
                                                                     tgtATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAAATAAATTAAATTTTTGATAAAACAAAAAAATA‑A‑AAAA‑AAAAATAAAAAAAAAATTTTTGTTTAATTTAAAAAATGAATATttattaa                                                             >  1:6580351/1‑127 (MQ=255)
                                                                      tttttttttttGT‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaa                                                           <  1:2440358/125‑1 (MQ=255)
                                                                      gtATTTTTTAGGC‑‑‑TTGTTT‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTATTTGAGTTTAAAATATGCAAATATAGTa                                                              >  2:6122854/1‑128 (MQ=255)
                                                                      gtATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGAACAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATTGTTTAGTTGAGTTTCAAATCTGCTTATATAGTACa                                                            >  2:6231812/1‑128 (MQ=255)
                                                                      gtATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATATTACaa                                                           >  2:7608452/1‑128 (MQ=255)
                                                                       tATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAAGTAAAATTTGGAACAACCAAAACTATA‑T‑AAAA‑AAAATTAAAAAAAATATTTTATTTAAGTTACAAATCTGAATATATTGAACaa                                                           >  2:7059596/1‑128 (MQ=255)
                                                                        aTTTTTTAGGC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAATATTTGGAAAAACCAAAAATATT‑T‑CAAA‑AAAATTAAAAAAAATATTTTATTTTTTTTTAAAATATTCATAAATAGTACaa                                                           >  2:5225199/1‑128 (MQ=255)
                                                                        aTTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAATATTTTGTTAAACCAAAAATTTT‑A‑AAAA‑AAAATTAAAAAAAATATTTTATTTGATTTTAAAATATGAaaataatttaaaaa                                                          >  2:6792218/1‑119 (MQ=255)
                                                                           ttttAGGC‑‑‑TTGTTT‑TTTTTTTTTTTTTTTTTT‑AAAAAAAAAATTAATATTTGGTAAAACAAAAACAATA‑T‑AAAA‑AAAATTAAAAAAAATATTTTTATTTTAATTAAAATATGCATATATAGTaaaatg                                                         >  2:3580641/1‑126 (MQ=255)
                                                                           ttttAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAATATA‑T‑CAAA‑AAAATTTAAAAAAATTTTTTAGTTGAGTTTCAAATCTGCAAATATAGTACAAAgta                                                       >  2:923841/1‑126 (MQ=255)
                                                                                 gC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAAGATTTGTATCAACCAAAAAATTT‑T‑AAAA‑AAAATTAAAAAAAATAGTTTTTTTGATTTTAAAAAATACAAATATTTTAAAATGAAATTTag                                                 >  1:6226590/1‑127 (MQ=255)
                                                                                     ggcttgtttttttttttttttttttt‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATATTTTATTTGAGTTTCAAATCTGCATATATTTTAAAAATGAAttt                                                   >  2:6411592/9‑128 (MQ=255)
                                                                                      gttttttttttttttttttttttGT‑AAATATAATAGTAAGATTTGGATCAAACATAATTATA‑T‑AAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                  <  1:4235409/121‑1 (MQ=255)
                                                                                       ttttttttttttttttttttttGT‑AAAAATAAAAGTAAGATTTGTATCAAACAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  2:5576302/122‑1 (MQ=255)
                                                                                       ttgtttttttttttttttttttGT‑AAAAATAAAAGTAAGATTTTGATCAACAAAAACTTTA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  1:3920642/122‑1 (MQ=255)
                                                                                          ttttttttttttttttttttt‑ATAATTAAAATTAATATTTTTATTAAATAAAAATATA‑T‑AAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTTAAATATGCATATATAGTACAAAGGAATTTATGAt                                              <  1:1021409/125‑1 (MQ=255)
                                                                                           gttttttttttttttttttt‑AAAAATAAAATTAAGATTTTGATCAACCAAAACTTTA‑T‑AAAA‑AAAATTAAAAAAAAAATTTTATTTTAGTTTCAAATATTCATATAAAATAAAAAGGAATTTAttaaa                                             >  2:7914972/3‑124 (MQ=255)
                                                                                              ttttttttttttttttT‑AAAAATATATGTAAGATTTGTATAAAACAAAATTATA‑T‑CAAT‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  1:5424555/128‑1 (MQ=255)
                                                                                              tttttttttttttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  1:5217810/128‑1 (MQ=255)
                                                                                               tttttttttttttttt‑AAAAATAAAATTAAAATTTTGAAAAACCAAAAAAAAA‑A‑AAAA‑AAAATTAAAAAAAATATTTTATTATTGTTTAAAATATTAAATTATATTAAAAAAGAATTTTTTATATaaa                                         >  1:988688/1‑128 (MQ=255)
                                                                                               ttttttttttttttGT‑TAATATATTAGTAAGTTTTGGATAAATAAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                         <  1:3230055/128‑1 (MQ=255)
                                                                                               ttttttttttttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                         <  1:7699641/128‑1 (MQ=255)
                                                                                                  tttttttttttGT‑AAAAATTAAAGTAAGATTTGGATCAAACAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa                                      <  1:2036070/128‑1 (MQ=255)
                                                                                                  tttttttttttGT‑AAAAATAAAATTAAGATTTGGAAAAACCAAAAATATA‑A‑AAAA‑AAAATTAAAAAAAATATTTTATTTTATTTTAAAATATGAATATATATTAAAAAGGAAATTATTATATaaaaaa                                      >  1:6887610/1‑128 (MQ=255)
                                                                                                         ttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                               <  1:2614694/128‑1 (MQ=255)
                                                                                                          tttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                              <  1:7615237/128‑1 (MQ=255)
                                                                                                           ttGT‑AAAAATATAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAATATGGATTat                             <  1:6813095/128‑2 (MQ=255)
                                                                                                           ttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  1:650415/128‑2 (MQ=255)
                                                                                                             gT‑AAAAATAATAGTAAGATTTGGATCAACAAAAAGTATA‑T‑AAAA‑TAATTTTAAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca                           <  1:1771601/128‑4 (MQ=255)
                                                                                                             gT‑AAAAATAAAAGTAAGATTTGGATTAACAAAATATATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca                           <  2:424219/128‑4 (MQ=255)
                                                                                                                 aatattaaaGTAAGATTTTGTTCAACCATAACTATA‑T‑CAAA‑TAAATTAAAATATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                        <  1:7274516/122‑1 (MQ=255)
                                                                                                                 aaaaTAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑AAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                        <  1:6398362/128‑1 (MQ=255)
                                                                                                                   aaTAAAAGTAAGATTTGGATCAACCAATACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATaa                      <  2:2087765/128‑1 (MQ=255)
                                                                                                                    ataataGTAAGATTTTGATCAAATAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt                     <  2:2719037/128‑1 (MQ=255)
                                                                                                                     tAAAAGTTAGATTTGGATCAACCATAACTATA‑T‑AAAA‑AAAATTAATAATAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTAAAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  2:5109621/128‑1 (MQ=255)
                                                                                                                     tAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  2:1797647/128‑1 (MQ=255)
                                                                                                                     tAAAAGTAAGATTTGGATCAACAAAAAATATA‑T‑AAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACATAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:7807722/128‑1 (MQ=255)
                                                                                                                      ataaGTAATATTTGGATCAACCAAAACTATA‑T‑CAAA‑AATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  2:4540604/126‑1 (MQ=255)
                                                                                                                      aaaaGTAAGATTTGGATCAAAAAATACTATA‑T‑CAAA‑AAAATTAAAAAAAATATTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  2:5725668/128‑1 (MQ=255)
                                                                                                                        aaGTAAGATTTGGATCACCCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 >  1:7027414/1‑128 (MQ=255)
                                                                                                                          gTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttt               >  2:4792459/1‑128 (MQ=255)
                                                                                                                            aataTTTGTATGAAGAAATACTATA‑T‑CAAT‑AAAATTAAAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             <  2:4147276/125‑1 (MQ=255)
                                                                                                                            aaGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  2:4659487/1‑128 (MQ=255)
                                                                                                                            aaGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  1:2170524/1‑128 (MQ=255)
                                                                                                                            aaGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  2:7824434/1‑128 (MQ=255)
                                                                                                                             aGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:2769530/1‑128 (MQ=255)
                                                                                                                             aGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:369998/1‑128 (MQ=255)
                                                                                                                             aGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:4379408/1‑128 (MQ=255)
                                                                                                                             aGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:2426487/1‑128 (MQ=255)
                                                                                                                             aGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:7134183/1‑128 (MQ=255)
                                                                                                                               aTTTTGATCAAAATAAAATATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          <  2:1956616/128‑1 (MQ=255)
                                                                                                                               aTTTGTATCAAACAAATCTATA‑T‑CAAA‑AAATTTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          <  2:2574730/128‑1 (MQ=255)
                                                                                                                               aTTTGGATCAAACAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          <  1:7487955/128‑1 (MQ=255)
                                                                                                                                tttGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTACTTGATAATCCATTTTTTAAt         >  1:4614570/1‑128 (MQ=255)
                                                                                                                                   ggATCGACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATATTCCATTTTTTAAtttt      >  2:5385056/1‑128 (MQ=255)
                                                                                                                                   ggATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtttt      <  2:6936856/128‑1 (MQ=255)
                                                                                                                                    gttCAAGCAATACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg     <  2:1685449/126‑1 (MQ=255)
                                                                                                                                    gATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTGTTTAATTTTg     >  2:7209506/1‑128 (MQ=255)
                                                                                                                                      tCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGtt   >  1:1265019/1‑128 (MQ=255)
                                                                                                                                      tCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGGTTAGGTGTGTTTCAAAAGGGCATAAATAGTACAAAGGAAATTAAGATAGAAAAAAATGGAATAGAGTATTATACAATTTTTAATgttgtt   >  2:390245/1‑128 (MQ=255)
                                                                                                                                       |                                                                                                                                  
AGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203810‑204064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑