Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8951.T61.4% inf / inf 1206intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (255/210);  new base T (583/155);  total (840/366)
Fisher's exact test for biased strand distribution p-value = 1.59e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1485 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  >  CP016816/203768‑204022
                                                                                                                                      |                                                                                                                                           
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTATTATTTTCCTTATCAACATTACAACTCTTTCAAAGTGTAGTTTTTA‑GG‑‑‑‑C‑TTg                                                                                                                                              >  1:5880305/1‑128 (MQ=255)
  tAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCGTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑tt                                                                                                                                         >  2:503631/1‑128 (MQ=255)
   taTTTTTTTTATAAAAAATAAAAAAAATTTTTCATTTAAACCCATTTGTAAAAAAGCCTTTGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTAAAAGTGTTTTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑ttt                                                                                                                                        <  1:6307250/127‑1 (MQ=255)
       ttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑tttttt‑t                                                                                                                                   >  1:624340/1‑128 (MQ=255)
       ttttttATAAAAAAAAATAAAAATTTTTAATTTAAATCCATTTTTAAAAAAGCCAATGTTCTAGGCTTTTTTTTATAATTTTCAACATTACAACGGTTTAAATGTGTATTTTTTA‑TG‑‑‑‑C‑TTG‑‑‑tttttt‑t                                                                                                                                   <  1:3494731/128‑1 (MQ=255)
           ttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑tttttt‑ttttt                                                                                                                               >  1:6471868/1‑128 (MQ=255)
            tataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTTTAAAAAAGCCTATGTTCTATGCTTTTTATTATACTAATCAACATTACAACCCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑tttttt‑ttttt‑‑t                                                                                                                            <  1:433295/128‑1 (MQ=255)
              taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTCAAAGTGTATTATTTA‑GG‑‑‑‑A‑TTG‑‑‑tttttt‑ttttt‑‑tt‑t                                                                                                                         >  1:2257679/1‑128 (MQ=255)
              taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGATTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑tttatt‑ttttt‑‑tt‑t                                                                                                                         >  1:4925143/1‑128 (MQ=255)
              aaaaaaaaaaTAAAAAATTTTAATTTAAATCCATTTTTAAAAAATCCTATTTTTTTGGCTTTTTATTATACTTATAAACATTACAACGCTTTCAAATTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑tttttt‑ttttt‑‑tt‑t                                                                                                                         <  1:1828449/127‑1 (MQ=255)
               aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑tttttt‑ttttt‑‑tt‑tt                                                                                                                        >  2:1897414/1‑128 (MQ=255)
               aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑ttttat‑ttttt‑‑tt‑tt                                                                                                                        >  2:5863401/1‑128 (MQ=255)
                aaaaaaaaTAAAAATTTTTCATTTAAATCCATTTTTAAAAAACCCTATGTTCTATGCTTTTTATTATAATTTTCAACATTACAACGCTTTCAAATTGTTTTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑tttttt‑ttttt‑‑tt‑tt‑t                                                                                                                      <  1:2753949/128‑1 (MQ=255)
                 aaaaaaaTAAAAATTTTTAATTTAAAGCCATTTTTAAAAAACCCTTTTGTAGTGGCTTTTTATTATAATTAACAACAATAAAACGCTTTAAAAGGGTTTTTTTTA‑GG‑‑‑‑G‑TTG‑‑‑tttttt‑ttttt‑‑tt‑tt‑tt                                                                                                                     <  1:5149401/128‑2 (MQ=255)
                 aaaaaaaT‑TAAATTTTTAATTTAAATGAATTTTTAAAAAATTATATTTTTTATGTTTTTTATTTTAATTATAAAAATTAAAACGCTTTCAAATTGTTTTTTTTA‑GG‑‑‑‑t‑ttt‑‑‑tttttt‑ttttt‑‑tt‑tt‑ttg                                                                                                                    <  1:1639435/128‑3 (MQ=255)
                   aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑tttttt‑ttttt‑‑tt‑tt‑tttt                                                                                                                   >  1:783725/1‑125 (MQ=255)
                         aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATa                                                                                                           >  2:2664161/1‑128 (MQ=255)
                          aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATa                                                                                                           <  2:7756250/128‑1 (MQ=255)
                          aaaatTTTTCATTTAAAGACATTTGTAAAAATTCCTATTTTATAGGCTTTTTATTTAACTTATCAACATTAAAACCCTTTCAAAGTGTTTTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATaa                                                                                                          <  1:3361059/128‑1 (MQ=255)
                           aaatTTTTTATTTAAATCCATTTTTAAAAAATCCTTTTTTTTATGTTTTTTATTTTAATTTTAAAAATTAAAACGCTTTAAAATTGTATTTTTTA‑TG‑‑‑‑G‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATaa                                                                                                          <  2:2048313/128‑1 (MQ=255)
                            aatTTTTAATTTAAATACATTTTTAAAAAATCCTATTTTTTTTGTTTTTTATTATACTTATCAACATTACAAATCTTTAAAATTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATaa                                                                                                          <  2:4522802/128‑1 (MQ=255)
                             atTTTTTATTTAAATTCATTTTTTAAAAATTCTATTTTTTTTTCTTTTTTTTTAAATTTTTAAAATTAAAAAGTTTTTAAATTTTTTTTTTTT‑TG‑‑‑‑G‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAAATAAAg                                                                                                       <  2:1776071/128‑1 (MQ=255)
                             atTTTTCATTTAAAGCCATTTGTAAAAAAGACTATGTTCTAGGCTTTTTATTATAATTATCAACATTACAACGATTTCAAAGTGTATTTTTTA‑GT‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TTATT‑TATT‑AAAAATaaa                                                                                                         >  2:3756923/1‑128 (MQ=255)
                              tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATATAAg                                                                                                       >  2:3907003/1‑128 (MQ=255)
                              tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTATT‑TT‑T‑at‑aaaaataaaa                                                                                                        >  2:3031120/1‑128 (MQ=255)
                                tttGATTTAAATCGATTTTTAAAAAATCCTTTTGTATAGGTTTTTTATTATAATTATTAATTTTTAAACGTTTTTATATTGTTTTTTTTATGT‑‑‑‑T‑TTT‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTa                                                                                                     <  1:2043566/128‑1 (MQ=255)
                                tttCTTTTAAATCCATTTGTTAAAAAGACATTTTTTTATGGTTTTTATTATAATTATAAACATTTCAACGCTTTAAAAGTGTATTTTTTA‑GT‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGt                                                                                                      <  2:637070/128‑1 (MQ=255)
                                tttCATTTAAATCAATTTTTAAAAAATCCTTTTTTCTATGCTTTTTATTATAATTATCAACATTACAACGGTTTCAAAGTTTATTTTTTA‑GG‑‑‑‑CTTTT‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTa                                                                                                     <  2:7324721/128‑1 (MQ=255)
                                 ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TTAT‑TT‑TAAAATTAAAGTaa                                                                                                    >  2:6138040/1‑128 (MQ=255)
                                   cATATAAACTCATATGTAAAAAATCCTATGTTCTATGGTTTTTATTATAATTATCAAAATAACAACGCTTTCAAAGTGTTTTTTTTA‑GGGTTTT‑TTT‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTa                                                                                                     <  1:6560378/128‑1 (MQ=255)
                                    aTTTAAATCCCTTTTTAAAAAATCCTATGTTCTAGGTTTTTTATTTAAATTATAAACATTACAAAGCTTTCAAATTTTTTTTTTTT‑TG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGa                                                                                                  <  1:7673186/128‑1 (MQ=255)
                                    aTTTAAACCCATTTGAAAAAAAGCCTTTGTTCTAGGCTTTTTATTATACTTTTTAAAATTACAACGCTTTCAAAGGGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAt                                                                                                 <  2:6725550/128‑1 (MQ=255)
                                     tttAAATCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAAAATTACAACGCTTTAAAATTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑‑TTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTg                                                                                             <  1:6175880/128‑1 (MQ=255)
                                       tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGAATGAt‑tt                                                                                              >  2:7472837/1‑128 (MQ=255)
                                       tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAAGTAATAt‑ttt                                                                                             >  2:3552276/1‑127 (MQ=255)
                                        aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAAGTAAAAT‑TTg                                                                                             >  2:6223013/1‑128 (MQ=255)
                                         aattaaTTTTTAAAAAATCCTATGTTATTTGCTTTTTATTATAATTATAAAAATTAAAACGATTTCAAAGTTTTTTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGAt                                                                                          <  2:1535591/123‑1 (MQ=255)
                                               tttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑ATAAAAAAAATTAATTT‑TTGGATGAAcc                                                                                     >  2:5172666/1‑128 (MQ=255)
                                               tttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GTAAAAAATAAAAATAAAAT‑TTATATAAAcc                                                                                     >  1:7918056/1‑128 (MQ=255)
                                                 tttAAAAAAGCATATTTTATATGCTTTTTATTATAATTATAAAAATTACAACGCTTTAAAATTTTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCaaa                                                                                  <  2:1657930/126‑1 (MQ=255)
                                                 tGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑‑‑TTTT‑TTTTT‑‑TT‑TT‑T‑GA‑AAAAATAAAATTATTAT‑TTGGATAAACCaaaaa                                                                                >  2:7000632/1‑127 (MQ=255)
                                                    aaaaaaTCCTATTTTTTAGGATTTTTTTTATAATTATAAACATTAAAACGCTTTCAAAGTGTTTTTTTTA‑GG‑‑‑‑C‑CTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAAc                                                                                <  2:7577196/128‑1 (MQ=255)
                                                    aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAATTTATAT‑TTGGATCATCCaaaa                                                                                 >  2:7109635/1‑128 (MQ=255)
                                                    aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACt                                                                               >  2:7644068/1‑128 (MQ=255)
                                                      aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAATTAATTA‑TTGGATCAAGCaaaagt                                                                               >  2:2398467/1‑126 (MQ=255)
                                                      aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAATTAATAT‑TTGGATAAAACaaaaaaa                                                                              >  2:2748056/1‑125 (MQ=255)
                                                      aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAATTAAGAA‑TTTGAACAACCAAAAcaa                                                                              >  2:4391666/1‑126 (MQ=255)
                                                          gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAAGAAAAAT‑TTGGATAAACAAAAACtataa                                                                           >  2:4654033/1‑127 (MQ=255)
                                                            cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATTAAATTTATAT‑TTGGTTCCACCAAAAATATAA‑Ca                                                                        >  1:6974947/1‑128 (MQ=255)
                                                             tttttttttttttttttATTATTATTATAAAAATTAAAAATATTTAAAATTTTTTTTTTTA‑TG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑Caaa                                                                      <  2:574298/116‑1 (MQ=255)
                                                             tattttttttgttttttATTTTATTTATAAAAATTAAAAAGTTTTATAATTTTTTTTTTTT‑TG‑‑‑‑G‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑Caaa                                                                      <  1:5528123/116‑1 (MQ=255)
                                                             tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAAGTAAGTT‑TTGGATAAAACAAAACTatataata                                                                       >  2:5327046/1‑124 (MQ=255)
                                                              tttttttAGTCTTTTTATTTTATTTATAAATATTTAAACTTTTTTAATTTTTATTTTTTT‑GT‑‑‑‑T‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑Caaa                                                                      <  1:1038414/122‑1 (MQ=255)
                                                                 ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAATTAATAT‑TTGTATAAACCAAAAAAATaa‑aaaa‑aaaa                                                                 >  1:5991030/1‑128 (MQ=255)
                                                                  catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAAAAAAAGTTAGAT‑TTGGCTCAACCAAATCTTGAT‑CAAA‑AAAAt                                                                >  2:3431385/3‑128 (MQ=255)
                                                                    tatggtttttATTTTAATTTTTAAAATTAAAACGATTTAAAATTGTTTTTTTTT‑TT‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTa                                                              <  1:3957905/123‑1 (MQ=255)
                                                                    tAGGCTTTTTATTATACTTATCAACATTACTACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAAGTAAGAT‑TTTGTTAAACCAAAACAATAT‑AAAA‑AATATTaa                                                             >  2:3166553/1‑128 (MQ=255)
                                                                    tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAATTAATAT‑TTGGATCAACCAAAACTATTT‑CAAA‑AAAAtt                                                               >  2:7219042/1‑128 (MQ=255)
                                                                    tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAAGTTAAAT‑TTTGATAAAACAATAATATTA‑TAAA‑AAAATTa                                                              >  2:4928635/1‑128 (MQ=255)
                                                                    tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAAAAAAAGTAAAAT‑TTGTTTACACAAAAAATAAAT‑aaaa‑aaaaaaa                                                              >  2:4048108/1‑125 (MQ=255)
                                                                     tttttttttATTTTATTTATAAAAATTTAAATTTTTTAAATTTGTTTTTTTTT‑GGT‑‑‑T‑TTT‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTaa                                                             <  1:2951422/124‑1 (MQ=255)
                                                                     aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAATTAATAT‑TTGTAAAAAAAAAAAATAT‑T‑AAAA‑AAAATTaa                                                             >  2:6276879/1‑128 (MQ=255)
                                                                        tttttttTAATAATTTTAAAAAATAAAAAGCTTTTAAATTTTTTTTTTTT‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTaaaaa                                                          <  1:7543983/127‑1 (MQ=255)
                                                                        cTTTTTATTTTAATTATACTCTATAAAAAGTTTTAAAATTGTTTTTTTTA‑TG‑‑‑‑T‑TTTTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTaaaa                                                           <  1:7278240/128‑1 (MQ=255)
                                                                          ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTTTTTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAATTAATAT‑TTGTATAAACCAAAACATTAA‑AAAA‑AAAATTaaaaa                                                          >  2:6543044/1‑128 (MQ=255)
                                                                          ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTTATTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAATTAATTT‑TTGTATCACCCAAAAC‑ATat‑aaaa‑aaaaataaaaaaaa                                                       >  2:7834562/1‑128 (MQ=255)
                                                                          ttttATTATAATTATAAAAATTACAACGCTTTAAAAGTTTATTTTTTT‑GGT‑‑‑T‑TTT‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTATGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTaaaaaaa                                                        <  1:1917946/128‑1 (MQ=255)
                                                                           tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAATTAATAT‑TTGTTTAAACAAAAAC‑ATAT‑TAAATAAAATTtaaaaaa                                                        >  2:6061217/1‑128 (MQ=255)
                                                                           tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAAAAAAATTAAATT‑TTTTAAAAAACAAAAAAAATA‑AAAA‑AAAATTaaaaaaat                                                       >  1:6390650/1‑127 (MQ=255)
                                                                           tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑TAAATTAAAA‑TAAAATATTTTAAAAACAAAAAATTTAT‑AAAA‑AAAATTaaaaaaaaa                                                      >  1:1414926/1‑127 (MQ=255)
                                                                               ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAATTAAAAT‑TTTGAAAAAACAAAACAATAT‑AAAA‑AAAATTAAAAAAAAtat                                                    >  2:3674039/1‑127 (MQ=255)
                                                                               ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAAAAAAATTAAAAT‑TTTTATAAACCAAACATATAT‑CAAA‑AAAATAaaaaaaaaaaa                                                    >  2:5965273/1‑125 (MQ=255)
                                                                               ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAAAAAAAATAAAAT‑TTTAAAAAACCAAAAAAAAAA‑CAaa‑aaaaaaaaaaaaaaaatt                                                   >  1:3754080/1‑124 (MQ=255)
                                                                                  atattttctaaaTTACAAATCTTTTAAAGTGTTTTTTTTT‑GT‑‑‑‑T‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTAAAAAAAAtagttta                                                <  1:4052654/117‑1 (MQ=255)
                                                                                   aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAAAAAAATAAATAA‑TTGTAAAAACAAAAACTA‑AT‑TAAA‑AAAAAAAAAAAAAAaaatttaat                                              >  1:6863620/1‑126 (MQ=255)
                                                                                    cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAAAAAAATTAATAT‑TTTTAATAAACAAAAATAAAT‑CAAA‑AAATTTAAAAAAAAaattttaat                                              >  2:1223050/1‑126 (MQ=255)
                                                                                     ttatataattttcAAGGCTTTTAATGTGTATTTTTTA‑GG‑‑‑‑T‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTAAAAAAAAtagtttagtt                                             <  2:6472064/116‑1 (MQ=255)
                                                                                     ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAATTAAGAT‑TTTGTTAAACCAAAAATTTTA‑AAAA‑AAAATTTAAAAAAAtattttatt                                              >  2:2525564/1‑126 (MQ=255)
                                                                                      tttCAAAATTTCAACTCTTTAAAATTTTATTTTTTA‑TG‑‑‑‑A‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTg                                            <  1:6095195/126‑1 (MQ=255)
                                                                                       aTCAACATTACAACGCTTTCAAATTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAATAAAATT‑TTGGAT‑AAACAAAACAATATACTAA‑AAAATATAAAAAAAttcttatctagc                                           >  1:7375914/1‑117 (MQ=255)
                                                                                        tCAACATTACATCTCTTTAAATGTGTATTTTTTA‑GG‑‑‑‑T‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGt                                         <  2:6658014/128‑1 (MQ=255)
                                                                                         cAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAATTAAAATTAAGAT‑TTGTATAAACCAAAACTTAAT‑AAAA‑AAAATTAAAAAAAAtatattagttaatt                                         >  2:54513/1‑124 (MQ=255)
                                                                                            cATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAATTAATAT‑TTGGTTCAACCAAAAATTTAT‑AAAA‑AAAATTTAAAAAATtattttttgtttgtttaa                                     >  1:5281282/1‑116 (MQ=255)
                                                                                              ttACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAAAAAATATAATTT‑TTGGTTAACCCAAAAAAATAG‑AAAA‑AAAATTTAAAAAAAatgtttttgtgtcttttt                                     >  1:4538097/1‑116 (MQ=255)
                                                                                                     gatttataattgtATTTTTTA‑TG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCa                             <  1:6743619/118‑1 (MQ=255)
                                                                                                        ttCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAATTAATAT‑TTGTAAAAACCAAAAATATAA‑AAAA‑AAAATTAAAAAAAAAATTTTATTTTATTTTAAAAtataaataa                          >  2:104632/1‑120 (MQ=255)
                                                                                                         tCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAATTAATAG‑TTGGATCAACCAAAACTATAT‑AAAA‑AAAATTAAAAAAAAAAGTTTAGTTTATTTTCaaaaatgaaaaat                         >  2:5631355/1‑118 (MQ=255)
                                                                                                          cAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑‑TTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGTTCAACCAAAAATTTAT‑AAAA‑AAAATTAAAAAAAATATTTTAGTTTAGTTTAAAAACTGCataataag                      >  2:1363407/1‑123 (MQ=255)
                                                                                                           taattttATTTTTTA‑TG‑‑‑‑G‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCAtatata                       <  1:4185513/122‑1 (MQ=255)
                                                                                                           aaaGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAAATAAGAT‑TTGGATAAACCAAAAAAATAT‑CAAA‑AAAATTAAAAAAAATAGTTTATTTGATTTTAAAATGTACataattat                      >  1:908985/1‑123 (MQ=255)
                                                                                                             aGTGTATTTTTTA‑GG‑‑‑‑C‑TTGTT‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAATTAATAT‑TTTGATAAAACAAAAAAATAT‑AAAA‑AAAATTAAAAAAAAAATTTTATTTTAATTTAAAAtaataaaatataa                      >  2:4784414/1‑116 (MQ=255)
                                                                                                              gtgtATTTTTTA‑TG‑‑‑‑G‑TTT‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAc                   <  1:7138911/128‑1 (MQ=255)
                                                                                                                tttttttttt‑tG‑‑‑‑T‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaa                 <  1:2440358/125‑1 (MQ=255)
                                                                                                                gtATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAATAT‑TTGGATAAACCAAAACTATAT‑AAAA‑AAAATTAAAAAAAATATTTTAGTTTATTTTCAAAAATGAATATATATTaaa                  >  2:2224376/1‑126 (MQ=255)
                                                                                                                 tATTTTTTA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAATAT‑TTGGATAAACCAAAAATATAT‑AAAA‑AAAATTAAAAAAAATATTTTTTTTTATTTTAAAATCTTCatattaataaaaa                 >  2:2866836/1‑119 (MQ=255)
                                                                                                                     ttttA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAAATATAT‑CAAA‑AAAATTTAAAAAAATTTTTTAGTTGAGTTTCAAATCTGCAAATATAGTACAAAgta             >  2:923841/1‑126 (MQ=255)
                                                                                                                      tttA‑GG‑‑‑‑C‑TTGT‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑TAAAATAAAAGTTAGAT‑TTGGTACAAACAAAAAAATTA‑AAAA‑AAAATTAAAAAAAATTATTTAGTTGAGTTTAAAAAATGCAAATTTATTACAAAGaaa            >  2:7949268/1‑128 (MQ=255)
                                                                                                                             ttttttttG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑AAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAtt          <  1:6671661/122‑1 (MQ=255)
                                                                                                                                   ttG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGTATCAACCAAAACTATAT‑AAAA‑AAAATTAAAAAAAATTTTTTAGTTGTGTTTAAAAAATGAATATTAATTAAAAATGAATTtattat    >  2:4168621/1‑128 (MQ=255)
                                                                                                                                     g‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑TT‑AAAAATAAAAGTTATAT‑TTGGATCAACCAAAACTATAT‑AAAA‑AAAATTAAAAAAAATAGTTTAGTTGCGTTTAAAATCAGCATATTAATTACAAAGGTATTTTTGAttt  >  2:682399/1‑126 (MQ=255)
                                                                                                                                      |                                                                                                                                           
TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑‑C‑TTG‑‑‑TTTTTT‑TTTTT‑‑TT‑TT‑T‑GT‑AAAAATAAAAGTAAGAT‑TTGGATCAACCAAAACTATAT‑CAAA‑AAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  >  CP016816/203768‑204022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑