Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816437,8803.A43.0% 143.3 / inf 881intergenic (‑184/+238)JCVSYN2_01985/JCVSYN2_01990glycosyl transferase/ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base . (227/274);  new base A (220/158);  total (448/433)
Fisher's exact test for biased strand distribution p-value = 1.76e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.78e-05

Only 100 of 1493 total aligned reads displayed.

TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTA  >  CP016816/437753‑438006
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tGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACATCCATATTACATATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑g                                                                                                                                                     >  1:6494086/1‑128 (MQ=255)
tGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑g                                                                                                                                                     >  1:5291732/1‑128 (MQ=255)
 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑ATA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑a                                                                                                                                              >  1:1708538/1‑128 (MQ=255)
  aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑at                                                                                                                                             >  1:4558120/1‑128 (MQ=255)
   aaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ata                                                                                                                                            >  1:3931931/1‑128 (MQ=255)
   aaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ata                                                                                                                                            >  2:1938456/1‑128 (MQ=255)
      ttATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAATTATTTTAGGAAATGAAGCAAAGCATACACCTCCATATTTCCTTTAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atttat                                                                                                                                         >  1:3347689/1‑128 (MQ=255)
      ttATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGAAAAAACATCAATATTAAATATATAG‑‑‑TTA‑‑A‑‑T‑‑‑‑T‑‑‑‑‑‑atatat                                                                                                                                         >  2:2720040/1‑128 (MQ=255)
          ttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAAAAAAAATTGTAGTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAACAACCTCCCTATTCCATATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ctatatataa                                                                                                                                     >  1:5175194/1‑127 (MQ=255)
           tttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑a                                                                                                                                  >  1:1868989/1‑128 (MQ=255)
             tGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑a                                                                                                                            >  2:2340623/1‑128 (MQ=255)
             tGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑C‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑a                                                                                                                            >  1:7370207/1‑128 (MQ=255)
                aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atat                                                                                                                         <  2:2021045/128‑1 (MQ=255)
                  ttGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAATCAAAGCAAAAACCACCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatat                                                                                                                       <  2:6468371/128‑1 (MQ=255)
                  ttGTAAGATTCATATTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatat                                                                                                                       <  2:399506/128‑1 (MQ=255)
                    tttagtattaTTTTTAATAAATATTATAAATATAAATTGTATTTTTAATATAAATATTTTAGTTAATGAAGCAAAGAAAAAACCTCCATATTATCTATATAG‑‑‑TTA‑‑T‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatat                                                                                                                     <  1:6078454/119‑1 (MQ=255)
                    gTAAGTTTCATTTTTAATAAATATTAGAGATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatat                                                                                                                     >  1:3701799/1‑128 (MQ=255)
                    gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATATTTAAAATAAATATTTTAGGAAATTAAGCAAATCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatat                                                                                                                     <  2:1108494/128‑1 (MQ=255)
                      aaGTTTCATTTTTAATAAATATTAGATATAAAAAATGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatat                                                                                                                   <  2:3716536/128‑1 (MQ=255)
                       tttttatttttttATAAATATTTTATATATATATTTTATTTTTAAAATAAATATTTTATGTTATTTATATAAGAAAAAAACTCCATATTTCCTATATAG‑‑‑TTA‑‑T‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatata                                                                                                                  <  1:6579971/121‑1 (MQ=255)
                       agattCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAAGCAAATCAAAAAACTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatata                                                                                                                  <  2:2186356/125‑1 (MQ=255)
                         tttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatata                                                                                                                >  1:6187692/1‑128 (MQ=255)
                           tcttttttAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATTAATAAAAGCAAAAACCTCAATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatata                                                                                                              <  2:4327167/125‑1 (MQ=255)
                           tCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatata                                                                                                              >  2:7059900/1‑128 (MQ=255)
                            cATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatat                                                                                                             >  1:1554835/1‑128 (MQ=255)
                            cATTTTTAATAAATATTAGAAATAAAAATTATATTTTTAAAATAAATATTTTAGGAAATGAAGAAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatat                                                                                                             >  1:5415478/1‑128 (MQ=255)
                             aTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatata                                                                                                            <  2:2919503/128‑2 (MQ=255)
                              tttttAATAAATATTAGAAATAAAAAATTTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATAACCTATAGAG‑‑‑ATA‑‑A‑‑A‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatatat                                                                                                           <  2:6689160/128‑3 (MQ=255)
                               ttttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatatata                                                                                                          <  2:6868779/128‑4 (MQ=255)
                                tttAATAAATATTAGAAATAAAATTTGTATTTTTAAAATAAATATTTTAGGAAAAGAAGCAAAGCAAAAACCTCCATATTACATATAGAG‑‑‑ATA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatataaat                                                                                                         >  1:7150489/1‑124 (MQ=255)
                                tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatatatgc                                                                                                         >  2:364112/1‑124 (MQ=255)
                                tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatatatgc                                                                                                         >  2:7634081/1‑124 (MQ=255)
                                tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatatatat                                                                                                         >  2:3476230/1‑124 (MQ=255)
                                tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatatatat                                                                                                         >  1:2454351/1‑124 (MQ=255)
                                tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatatatat                                                                                                         >  1:2629837/1‑124 (MQ=255)
                                 ttAATAAATATTATAAATAAAAATTTTTTTTTTAAAATAAATATTTTAGTAAATGAAGCAAATCAAAAACCTCAATATTAAATATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatatatata                                                                                                        <  1:2195159/128‑6 (MQ=255)
                                  taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatatataaaa                                                                                                       >  1:7886417/1‑122 (MQ=255)
                                    ataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATAGAT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAga                                                                                              >  2:2397325/1‑127 (MQ=255)
                                       aataTTATATATATAAATTGTTTTTTTAAAATAAATATTTTATGAAATTAATCAAAGATAAAACATCCATATTAAATATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑T‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatatatatgcaagcg                                                                                                  <  1:4211076/128‑12 (MQ=255)
                                       aataTTAGATATATAAATTTTATTTTTAAAATAAATATTTTAGTAAATGAATAAAAGCAAAAAACTACATATTAACTATAGAG‑‑‑ATA‑‑A‑‑T‑‑‑‑T‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatatatatgcaagcg                                                                                                  <  1:3518355/128‑12 (MQ=255)
                                       aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑atatatatat‑‑at‑‑‑‑atatatatatatatataaacaagctat                                                                                                  >  2:5649306/1‑117 (MQ=255)
                                       aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑‑‑‑‑ATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCAt                                                                                     >  2:657486/1‑128 (MQ=255)
                                           ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGc                                                                                       >  2:3130172/1‑128 (MQ=255)
                                            tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATa                                                                                    <  2:4803384/128‑1 (MQ=255)
                                             aGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCACCAt                                                                                     <  2:7437096/128‑1 (MQ=255)
                                              taaaaaaaaATTTTATTTTTAAAAAATATATTTTTTTAAAATAATAAAATAAAAAACATCTATATAATATATATAG‑‑‑ATA‑‑A‑‑TTATAT‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCa                                                                                      <  2:864429/127‑1 (MQ=255)
                                                aaTAAAAATTTTATTTTTAAAATAAATATTTTATCAAATTAATCAAATAAAAAACCTCCATATTACCTATAGAG‑‑‑ATA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATa                                                                                    <  2:3339100/128‑1 (MQ=255)
                                                  tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAATTgg                                                                              >  2:1786269/1‑128 (MQ=255)
                                                   aaaaaTAGTATTTTTAAAATATATATTTTATGAAATGAAGCAAACAAAAAACATCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATaaaa                                                                                 <  2:1597848/128‑1 (MQ=255)
                                                     aaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGAACAGAATTAAATGGt                                                                             >  1:7659351/1‑128 (MQ=255)
                                                      aaTTGTATTTTTAAAATAAATATTTTATGAAATTAATCAAAGAAAAAACCTCCATATTAACTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATgg                                                                              <  1:5919276/128‑1 (MQ=255)
                                                        ttGTATTTATAAAATAAATATTTTAGTTAATGAATAAAAGAAAAAAAATCCATATTAACTATAGAG‑‑‑TTA‑‑A‑‑TTATAT‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTg                                                                            <  2:4671905/128‑1 (MQ=255)
                                                          gtttatttttaataaataTTTTTTGTTATGGATCTAATCTAAAACATCGATATTAGCTATTGAG‑‑‑TTT‑‑ATTT‑‑‑‑T‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAAt                                                                        <  1:5037360/118‑1 (MQ=255)
                                                          gTATATTTAAAATAAATATTTTAGGAAATGACTCAAAGAAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGaa                                                                          <  1:4842215/128‑1 (MQ=255)
                                                           tATTTTTAAAATATATATTTTATTAAATCAATCACATAAAAAAACACTATATTAAATATAGAGATATTT‑‑A‑‑TA‑‑‑T‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGaaa                                                                         <  2:496567/128‑1 (MQ=255)
                                                           tATTTTTAAAATAAATATTTTAGTAAATTAATAAAATAAAAAACATCAATATTAACTATAGAG‑‑‑TTA‑‑A‑‑TTATAT‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGaaa                                                                         <  2:5972182/128‑1 (MQ=255)
                                                            aTTTTTAAAATAAATATTTTTGTATATTAATATAAGAAAAAAACTTAATATTATATATATAG‑‑‑TTT‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAAttt                                                                      <  1:583130/128‑1 (MQ=255)
                                                               tttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑TC‑TAGAGATCAGCATAAAATTGTTATATTTata                                                                   >  1:441713/1‑126 (MQ=255)
                                                                ttATAATAATTATTTTAGTATATGAAGCAAATCAAAAACATCAATATTAAATATAGTG‑‑‑TTA‑‑A‑‑T‑‑‑‑T‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCt                                                                <  1:318129/128‑1 (MQ=255)
                                                                ttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑AC‑AAGCGATCAGCATAAAATTGTGAAATTTAGAt                                                                  >  2:2621530/1‑128 (MQ=255)
                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAACCCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAATTATAGa                                                                   >  2:7304292/1‑128 (MQ=255)
                                                                     atatatatTTTAGTAAATTAAGAATATCAAAAAACTAAATATTAACTCTATAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATATATATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATc                                                                 <  2:4170042/128‑1 (MQ=255)
                                                                     ataaataTTTTATTAAATGAATCAAATCAAAAACATCCATATTATCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTg                                                               <  1:2862509/128‑1 (MQ=255)
                                                                       aaataTTTTATGAAATTAATCAAATCAAAAAACTCAATATTAAATATAGAG‑‑‑TTA‑‑A‑‑TTA‑‑T‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                           <  2:7877451/128‑1 (MQ=255)
                                                                          tatTTTAGTAAATTAAGCAAATCAAAAACATCTATATTAAATATAGAG‑‑‑TTA‑‑A‑‑TTATAT‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTg                                                          <  1:777000/128‑1 (MQ=255)
                                                                           atTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATTGTTAAATTTATATCTGAGTTgt                                                         >  1:4074067/1‑127 (MQ=255)
                                                                            ttttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATATATATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGAGAAATTTAGATATGAGttt                                                          >  2:609584/1‑127 (MQ=255)
                                                                             tatAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCAATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATATATAA‑‑‑‑TA‑AAGAGATCAGAATAAAATGTTTAAATTTATATCAGAGTTTGTc                                                       >  1:5577609/3‑128 (MQ=255)
                                                                                 ggAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAt                                                 >  1:2745126/1‑128 (MQ=255)
                                                                                  taaaTTAAGAAAATAAAAAAACTCTATATTATCTATAGAGA‑‑TTATTA‑‑TA‑‑‑T‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                  <  1:7501803/127‑1 (MQ=255)
                                                                                     aTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATAAATATAT‑‑‑‑‑‑‑‑GA‑AAGCTATCATCAAAAAATGGTTAAATTTAGATCTCAGTTTGTCTTAAATTTCTAg                                           >  2:3054597/1‑128 (MQ=255)
                                                                                       gAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑TTATAT‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                             <  2:7774008/128‑1 (MQ=255)
                                                                                          gaacagcaaaAATATCTATATTATCTATAGAG‑‑‑TTA‑‑A‑‑TTA‑‑T‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttt                                        <  2:1298383/124‑1 (MQ=255)
                                                                                            aaagcaaaAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATATATATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑TA‑AAGCGATAAGCATAAAATGGTGATATTTATATCTGAGTTTGTCTTATATTTGTAGt                                          >  2:2815427/1‑128 (MQ=255)
                                                                                             aagcaaaAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATATATATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AATCGATCAGCATAAAATGGTGAAATATAGATATGAGTTGGTCTTAAATTTgttgtt                                         >  2:6221942/1‑128 (MQ=255)
                                                                                             aagcaaaAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCAAAAAATTGTGAAATTTAGATCTGATTGGGTCTTATATTTGTAGttta                                       >  2:5361498/1‑127 (MQ=255)
                                                                                               tcaaaAACATCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑TTATAT‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                     <  2:5237227/127‑1 (MQ=255)
                                                                                                caaaAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTTTAGTTtttat                                    >  1:1311011/1‑128 (MQ=255)
                                                                                                caaaAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATATATA‑‑‑‑‑TCAAAGCTATCAGAATAAAATGGTTATATTTAGATGTGAGTTGGTCTTATATTTGTAGTTtttat                                    >  1:3015262/1‑128 (MQ=255)
                                                                                                  aaaaCCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GA‑AAGAGATCAGAATAAAATTGTGAAATTTATATCTGAGTTGGTCTAATATTTTTAGTTTttatttat                                >  1:977604/1‑128 (MQ=255)
                                                                                                   aaaCCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑TAGCGATCAGAATAATATTGTGAAATTTAGATCTGAGTTTGTATTAAATTTGTTGTTtttattta                                 >  1:1014028/1‑128 (MQ=255)
                                                                                                    aaCCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATATATATATAATC‑AAGATATCATCATAAAATTTTGAAATATAGATCTGAGTTTGTATTAAAtttttattttttat                                    >  1:3831616/1‑128 (MQ=255)
                                                                                                      actacATATTACATATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAg                              <  2:5823881/124‑1 (MQ=255)
                                                                                                        tCCATATTATCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTta                          <  1:6728297/128‑1 (MQ=255)
                                                                                                         ccATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATATATATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAATATGGTGAAATTTAGATCTGTGTGGGTCTTAAATTTGTAGTTTTTATTTATAGt                             >  1:4718170/1‑128 (MQ=255)
                                                                                                         ccATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATATATAA‑‑‑‑TC‑AAGCGCTCAGCATAAAATTTTGATATTTATCTCTGAGTTGTTCATTAATTTGTTGTTTTATTTTTTAGttt                           >  1:6389631/1‑128 (MQ=255)
                                                                                                           atatAACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                         <  2:6338560/128‑1 (MQ=255)
                                                                                                           atatAAACTATATAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATAT‑‑ATATAAATATATATATATATAT‑‑‑‑‑‑‑‑GA‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTT‑TAGTTTTTATTTATAGTTtata                        <  1:5693914/128‑1 (MQ=255)
                                                                                                             atTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑TC‑AAGCGATCAGCATAAAATGGTGATATTTAGATATGAGATGGTCTTAAAATTTTAGATTTTATTTATATTTTATaa                       >  2:5449171/1‑128 (MQ=255)
                                                                                                              ttACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATTGTTAAATTTATATCTGAGTTTGTATTAAATTTGTAGTTTTTATTTATAGTTTATaaa                      >  1:6990896/1‑128 (MQ=255)
                                                                                                              ttACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATaaa                      <  1:2357074/128‑1 (MQ=255)
                                                                                                              ttACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGAGAAATTTAGATCTGAGTTGGTCTAATATTTGTAGTTTTTATTTATAGTTTATtaa                      >  2:1436160/1‑128 (MQ=255)
                                                                                                               tACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑TC‑AAGCTATCAGCAAAAAATAGTGAAATTTAGATCTGAGTTGGTCTTATATTTTTAGTATTTTTTTATAGTTTATaaat                     >  1:6850104/1‑127 (MQ=255)
                                                                                                               tACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGAATAAAATTGTGAAATTTATATCTGAGTTTGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAg                     >  1:2007840/1‑128 (MQ=255)
                                                                                                               tACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGCTCAGCATAAAATGGTGAAATTTATATATGAGTTGGTCTTATATTTGTAGTTTTTATATATAGTTTATAAAGtt                   >  2:572813/1‑128 (MQ=255)
                                                                                                               tACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGtt                   <  2:4527249/128‑1 (MQ=255)
                                                                                                               aaaatatataG‑‑‑ATT‑‑A‑‑T‑‑‑‑T‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                 <  1:1109000/124‑1 (MQ=255)
                                                                                                                aCCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GA‑AAGCGATCAGCATAAAATGTTGAAATTTATATCTGAGTTGTTCTTTAATTTGTAGTTTTTATTTATAGTTTATaaaaata                  >  2:1184535/1‑124 (MQ=255)
                                                                                                                    ataGAG‑‑‑TTA‑‑A‑‑TCA‑‑T‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaatta              <  2:5096629/128‑3 (MQ=255)
                                                                                                                      agag‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑‑‑ATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATTGTGAAATTTAGATATGAGTTGTTCTAAAATTTGTAGTTTTTATTTATAGATTATAAAGATAATAATTTAGa        >  2:3846199/1‑128 (MQ=255)
                                                                                                                                             |                                                                                                                                                
TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑TTA‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATAT‑‑AT‑‑‑‑ATATATATATATATAT‑‑‑‑‑‑‑‑GC‑AAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTA  >  CP016816/437753‑438006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑