Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2530CA45.1% 2003.5 / inf 2506intergenic (‑536/+307)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (446/871);  new base A (925/157);  total (1390/1116)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2561 total aligned reads displayed.

AGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTT  >  CP016816/420126‑420379
                                                                                                                                     |                                                                                                                              
  aaaaaatctaGAAATTTTTTTATAAATTTTTAATTTTAAAAACTGAATATTTTTTATAATTGTTAAATTTTTTTCAAATAATTTTTTATTAAAAAA‑TTTTATTC‑C‑G‑‑GTTTT‑TTTTTTTTTTTT‑ACaaa                                                                                                                             <  1:1758416/121‑1 (MQ=255)
   aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑‑TTTT‑TATTTTTTTATT‑ACaaaa                                                                                                                            >  1:7700427/1‑128 (MQ=255)
   aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTCAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑A‑‑TTTTT‑TTTTTTTTTTTa‑aaaaa                                                                                                                             >  2:5528562/1‑128 (MQ=255)
    aaataatttaatttttttAAAAAATTTTTAATTTTAATATATTTATTTTTTTTTAAATTTTTAAATTTTTTTAAAATAATTTTTTATTTATAAA‑TTTT‑TTTTT‑T‑‑TTTTT‑TTTTTTTTTTTT‑ACaaaaa                                                                                                                           <  1:5718880/116‑1 (MQ=255)
     actactAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑Aaaaaaa                                                                                                                           >  2:7567028/1‑128 (MQ=255)
      ataatattaattttttAAAAAATTTTTAATTTTAATAAATTAATTATTTTTAAATTTTTTAAATTTTTTTAAAATATTTTTTTTTTAATAAA‑TTTTTTGCTCTT‑‑TTTTT‑TTTTTTTTTTTT‑ACaaaaa                                                                                                                           <  1:1553892/118‑1 (MQ=255)
      aaaatataaattttttTAAAAATTTTTAATTTTTATAACTTTATTTTTTTTAAAATTTTTTAATTATTTTAAAATCTTTATCTATTATTAAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAat                                                                                                                          <  1:5169366/118‑1 (MQ=255)
       tattattaattttttAAAAAATTTTTAATTTTTATAATTTATTTTTTTTTTAAATTTTTAATTTTTTTTTAAATTATTTTTTTTTTATTAATTTTTTTTTTT‑T‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAat                                                                                                                          <  1:222302/119‑1 (MQ=255)
       tattaGCAATTTTTTAAATAATTTTTATTTTTTTTTACTGAATTTTTTTTTAAATTGTTTAATTATTTTCAAATCATTTTATTTTAATAAT‑TTTTTTTCTA‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAtta                                                                                                                         <  1:761869/125‑1 (MQ=255)
       tactaGCACATTTTTTAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTTTTAAATTATTTTCAAATCATTATCTTTTAATCAA‑TTTTATGCGC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAata                                                                                                                         <  1:6961891/128‑1 (MQ=255)
        actaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAatat                                                                                                                        >  2:4474805/1‑128 (MQ=255)
        actaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAatatat                                                                                                                        >  1:3714331/1‑128 (MQ=255)
        aatatcaattttttAAAAAATTT‑TAATTTTAATAACTTAATTATTTTTAAAATTTTTAAATTATTTTAAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑‑TTTT‑TTTTTTTTTTTT‑ACAAAAATATaa                                                                                                                      <  1:4714285/120‑1 (MQ=255)
         ctaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATaa                                                                                                                      >  2:17851/1‑128 (MQ=255)
         cattaaattttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTAAAATTTTTAAATTATTTTCAAATAATAATATATTAAAAAA‑TTTTATTCTC‑G‑‑‑TTTT‑TTTTTTTTTTTT‑ACAAAAATATaa                                                                                                                      <  2:5189704/121‑1 (MQ=255)
           ttaatttttttAAAAAATTTTTAATTTTAAAAAATTTATTTTTTTTTAAATTTTTTAATTATTTTAAAATTATTTTATATTAATAAA‑TTTTATGTTT‑T‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAat                                                                                                                     <  1:7082230/123‑1 (MQ=255)
           aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATTCTC‑T‑‑TTTTT‑TTTTTTTTTATA‑AAAAAAATATAat                                                                                                                     >  2:3080399/1‑128 (MQ=255)
           aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATTCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAAtatatt                                                                                                                     >  1:6826553/1‑126 (MQ=255)
            gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTAT‑AAAAAAAAATAatt                                                                                                                    >  2:5071877/1‑128 (MQ=255)
            gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑‑TTTT‑TTTTTTTTTTTT‑AAAAAAATATAatta                                                                                                                   >  2:3921425/1‑127 (MQ=255)
             caattttttAAAAAATTTTTAATTTTAATAAATGAATTATTTTTCAAATTGTTAAATTATTTTAAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAattt                                                                                                                   <  2:2791528/125‑1 (MQ=255)
              aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAAAATAattta                                                                                                                  >  2:586685/1‑128 (MQ=255)
               cTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑GT‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAattta                                                                                                                  >  2:2300087/1‑128 (MQ=255)
               cTTTTTTAAAAAATTTTTAATTTTAATAACTGAAATATTTATCTAATTGTTAAATTATTTACAAATCATTATCTATTAATCAA‑TTTTATGCTC‑T‑‑TTTTTAATTTTTTTTTTT‑AAAAAAAtatatatta                                                                                                                  >  2:4188034/1‑123 (MQ=255)
                ttttttAAAAAATTTTTAATTTTAATAAATTAATTATTTTTCAAATTTTTAAATTATTTTAAAATAATTATATATTAATCAA‑TTTTATGCTC‑G‑‑‑TTTT‑TTTTTTTTTTTT‑ACAAAAATATAatttattt                                                                                                               <  2:3764079/128‑1 (MQ=255)
                    ttAAAAAATTTTTAATTTTAATAAATTAATTATATTTAAAATTTTTAAATTTTTTTAAAATAATTTTTATTTAATAAA‑TTTTATGCTG‑G‑‑‑‑TTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTa                                                                                                          <  2:6450694/128‑1 (MQ=255)
                        aaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑‑TTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAAc                                                                                                       >  1:852472/1‑128 (MQ=255)
                         aaaTTTTTAATTTTAATAACTGAATTATTTTTAAAATTGTTAAATAATTTTAAAATAATTAAATATTAAAAAA‑TTTTATGAAC‑T‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAAAAAAaattaattttataaaa                                                                                                       >  2:4935800/1‑120 (MQ=255)
                          aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑GTTTTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTTTTTAATTaaa                                                                                                        >  1:2881629/1‑128 (MQ=255)
                          aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAATAATATAATTTTTTTTATTAAAct                                                                                                      >  2:6349448/1‑127 (MQ=255)
                          aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑‑‑‑TTTT‑TTTTTTTTTTAT‑AAAAAAAAATATTTTATTTAATTaaaataa                                                                                                    >  2:1646360/1‑124 (MQ=255)
                           atttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑‑TTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAACGta                                                                                                    >  2:7855156/13‑128 (MQ=255)
                            tttttaattttaatAAATTAATTATTTTTAAAATTGTTAAATTATTTTAAAATAATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGta                                                                                                    <  1:4206339/117‑1 (MQ=255)
                              tttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATAAAATTTATTTTTTTAAACGtatt                                                                                                  >  2:7452208/10‑127 (MQ=255)
                                  attttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATATATTTTATTAAACGAATATTTa                                                                                              >  2:4120603/6‑128 (MQ=255)
                                     ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTGATTAAACTTATATTTAttt                                                                                           >  1:7516460/3‑126 (MQ=255)
                                      taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGtt                                                                                          >  2:1524788/2‑128 (MQ=255)
                                       aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACTTATATTTATGttt                                                                                         >  2:801143/1‑128 (MQ=255)
                                       aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATATTTATtttt                                                                                         >  1:7898755/1‑128 (MQ=255)
                                          aaatttatttttTTTTAATTTTTTTAATTTTTTTTAAATTATTATTTTTTTATTAA‑TTTTTTTTTA‑T‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaat                                                                                      <  2:2683199/122‑1 (MQ=255)
                                            cTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑‑TTTT‑TTTTTTTTTTTT‑ACAAAAAAATAATTTATTTAATTAAACTTATATTTATGTTTAATaaa                                                                                   >  2:4032218/1‑128 (MQ=255)
                                            attaaTTATTTTTAAAATTTTTAAATTATTTTAAATAAATTATTTATTAATAAA‑TTTTATTTTT‑T‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                    <  2:4763910/125‑1 (MQ=255)
                                             tGAATTATTTTTCAAATTGTAAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑GT‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATAAAACTAATATTTATGTTtaataa                                                                                    >  2:890700/1‑128 (MQ=255)
                                              ttattattTTTTAAATTGTTAAATTATTTTTAAATAATTATTTATTTATTAA‑TTTTTTGGTC‑G‑‑‑TTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATaaaaa                                                                                 <  2:598147/126‑1 (MQ=255)
                                               aaTTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑‑‑TTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAACCGTATATTTATGTTTAATAAAAATg                                                                               >  1:2372679/1‑128 (MQ=255)
                                                attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGATC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAAAATAATTTAAATAATTAAACGTTTATTTTTTTTtaataatatg                                                                                >  1:1878791/1‑124 (MQ=255)
                                                 ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTA‑AAAAAAAAATAATTTATTTTAATAAAATTATATTTATTTTTAATaaaaaat                                                                               >  2:3232229/1‑126 (MQ=255)
                                                  tattTTTCAAATTGTTAAATTATTTTCAAATCAATATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTTAAAAAAAATATAATTTATATTATTAAACTTAAATTTATTTTAAATAAAAAta                                                                               >  1:7209670/1‑127 (MQ=255)
                                                      tttataaTTTTTAAATTATTTTAAAATCATTATATATTATTTAA‑TTTAATTCTA‑G‑‑‑TTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaag                                                                         <  2:6823457/123‑1 (MQ=255)
                                                      tttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGTaaaa                                                                          >  2:4320004/1‑128 (MQ=255)
                                                      tttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTAATTAAACGTATATTTATGTTTAATAAAAATGGaaaa                                                                          >  1:5900207/1‑128 (MQ=255)
                                                        tCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATTTaaaaaa                                                                        >  1:6323279/1‑126 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTTTTTTTTTAAACTTATATTTATGTTTTATAAAAATTaaaaaaaata                                                                     >  1:2531402/1‑126 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATATAaaagaaat                                                                     >  2:7013776/1‑127 (MQ=255)
                                                            aTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑‑TTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATGGAAAAAAAATTg                                                                   >  2:6101615/1‑128 (MQ=255)
                                                              ttttAAATTATTTTCAAATATTTATATATTAATAAA‑TTTTATGTTA‑G‑‑‑TTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGaa                                                                 <  1:5384816/126‑1 (MQ=255)
                                                                 ttaaTTTTTTTAAAATTATTATTTTTTAATTAA‑TTTTATTAT‑‑T‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTg                                                              <  2:668802/126‑1 (MQ=255)
                                                                  aaaTTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTTTTTTATTAAACGTATATTTATTTTTAATAAAAATTTAAAAAAAATTTAAttt                                                              >  1:7786244/1‑127 (MQ=255)
                                                                   aaTTTTTTTTAAATTATTTTATTTTAATAAA‑TTTTTTTCTA‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGt                                                             <  1:7329298/128‑1 (MQ=255)
                                                                        ttttAAAATCATTATATTTTTATAAA‑TTTTTTGTAT‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCataa                                                        <  1:6546449/128‑1 (MQ=255)
                                                                         tttCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATAAAATTTATTTTATTAAACGTATATTTATGTTTAAAAAAAATTGAAAAAAAAGTAAATTTTaataat                                                       >  2:7755949/1‑128 (MQ=255)
                                                                           tCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGTTTAAACTTATATTTTTTTTTAATAAAAATTTAAAATAAATTGATTTTTATtaataa                                                     >  2:5345763/1‑128 (MQ=255)
                                                                           tCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATAAAATTTATTTGATTAAACATATATTTATGTTTAATAAAAATGGAAAAGAAATTTAATTTTCAtaataa                                                     >  2:1355135/1‑128 (MQ=255)
                                                                            cAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTA‑AAAAAAATAAAATATATTTTATTAAAATTATATTTATTTTTAAAAAAAATTAAAAAAAAATTTAATTTAAAtaataaa                                                    >  2:3663945/1‑127 (MQ=255)
                                                                            cAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑‑ATTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTTAACGTTTTTTTTTTTTTAATAAAAATTGAAAATAAATTGAATTTTAATAAtaatt                                                   >  2:344002/1‑128 (MQ=255)
                                                                             aaaTCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATGTAAAAGAAATTTAATTTTAATAAtaatt                                                   >  1:6430987/1‑128 (MQ=255)
                                                                                 cATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑‑TTTT‑TTTTTTTTTTTT‑AAAAAAATAAAATTTATTTTATTAAACGTATATTTATGTTTAAAAAAAATGGAAAAAAAATTTAATTTTAATAAtaatttaatt                                              >  1:6704732/1‑128 (MQ=255)
                                                                                 aaTTATATATTAATAAA‑TTTTATTCT‑‑A‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAAtaatttaatt                                              <  2:7665340/127‑1 (MQ=255)
                                                                                      tCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTTTTTTTTTAAAAGTATTTTTATTTTTAATAAAAATTGAAAAAAAAGTTAATTTGAATAATTATTTTATTAAat                                          >  1:4478726/1‑128 (MQ=255)
                                                                                       cTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTAAATTTATTTTTAAAAAAAATTTAAAATAAAGTTAATTTTAATAATAATTTAATTAAata                                         >  1:2039357/1‑128 (MQ=255)
                                                                                       cTATTAATCAA‑TTTTATGCTC‑‑‑‑ATTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACTTATATTTATGTTTAATAAAAATGAAAAAGAAATTTAATTTTAATAATAATTTAATTAAatat                                        >  1:3218900/1‑128 (MQ=255)
                                                                                          ttaattaa‑TTTTATTTTT‑GT‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAatata                                       <  2:6913815/128‑1 (MQ=255)
                                                                                          ttAATAAA‑TTTTTTTCTA‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAatatat                                      <  2:6731834/128‑1 (MQ=255)
                                                                                           tAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAAAATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGTAAAATAAATTTAATTTTAATAATATTTTAATTAAAtatata                                     >  2:2404305/1‑128 (MQ=255)
                                                                                            aaTCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATTAAAAAGAAATTTAATTTAAATAAAAATTTAATTAAATATaaaa                                    >  1:6162204/1‑128 (MQ=255)
                                                                                             aTCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATAAAATTTATTTTATAAAACTTATATTTATTTTTAATAAAAATTTAAAAAAAATATAATTTAAATAATAATTTAATTAAataaataaa                                   >  1:2701875/1‑127 (MQ=255)
                                                                                                    tttATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAATAAAGTGAATTTTAATAATAATTTAATTAAATATATAAAAAtata                             >  2:2045779/1‑128 (MQ=255)
                                                                                                       ttttttatttttttt‑tttttttttttt‑tCATAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGATTTGTCATAATAATTTAATTAAATATATTACAATGTa                             <  1:3044259/118‑1 (MQ=255)
                                                                                                          gttag‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGttt                        <  2:6232496/124‑1 (MQ=255)
                                                                                                           ttatgctcgtt‑tttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATTGAAAAGAAAGTTAATTTTAATAATAATTTAATTAAATATATAACaatttaattt                         >  2:4600942/10‑128 (MQ=255)
                                                                                                            tttttttttt‑tttttttttttt‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGttt                        <  2:7361777/123‑1 (MQ=255)
                                                                                                            tgtttgtttt‑tttttttttttt‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGttt                        <  1:3950804/122‑1 (MQ=255)
                                                                                                            c‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAAATGAAAAAAAAGTTAATTTTCATAATAATTTAATTAAATATATAACAATTTAAATTTTaa                     >  2:2527382/1‑128 (MQ=255)
                                                                                                            c‑G‑‑TTTTT‑TTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATTGAAAATAAAGTGGATTTTAATAATAATTTAATTAAATATATAAAAATGTAATTTTTaa                     >  2:1128124/1‑128 (MQ=255)
                                                                                                              tttttttt‑tttttttttttt‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                      <  2:6588896/125‑1 (MQ=255)
                                                                                                              tttttttt‑tttttttttttt‑AAAAAAATATAATTTATTTTTTTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                      <  1:603214/125‑1 (MQ=255)
                                                                                                              tatttttt‑tttttttttttt‑AAAATAATATAATTTATTTTATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                      <  1:497765/125‑1 (MQ=255)
                                                                                                               gtttttt‑tttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATTTTTATTTTTAAAAAAAATTGAAAAGAAATTGAATTTTAATAATAATTAAATTAAATATATAAAAATTTAATTTTTaa                     >  2:5706399/3‑128 (MQ=255)
                                                                                                                 ttttt‑tttttttttttt‑ACATATATATTATTTTTTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAATTGAATTGTCATAATATTTTAATTAAATATATAACAATGTAAGTTTTaaaa                   <  1:4105005/128‑1 (MQ=255)
                                                                                                                 ttttt‑tttttttttttt‑AATAAAATATAATTTATTTGGTTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTaaaa                   <  1:1286451/128‑1 (MQ=255)
                                                                                                                  tttt‑tttttttttttt‑AAAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATGGAAAATAAAGTTAATTGTAATATAAATTTAATTAAATATAAAAAAATTAAAGTTTTaaaaa                  >  1:6649705/1‑127 (MQ=255)
                                                                                                                     t‑tttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta               <  2:7121592/128‑1 (MQ=255)
                                                                                                                        ttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact             <  1:969691/128‑1 (MQ=255)
                                                                                                                          ttttttttt‑ATAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt           <  1:3485579/128‑1 (MQ=255)
                                                                                                                          ttttttttt‑AAAAAAATATAATTTATTTTATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAATTTAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt           <  1:1013904/128‑1 (MQ=255)
                                                                                                                            ttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTTTGTTTAATAAAAATGGAAAAGAAAGTTAATTTTCATAATAATTTAATTAAATATATAAAAATTTAATTTTTAAAAATTAAttttt         >  2:2950539/1‑128 (MQ=255)
                                                                                                                             tttttt‑AAAAAAATTTTATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttttt        <  1:4350527/128‑1 (MQ=255)
                                                                                                                               tttt‑AAAAAAATATAATTTATTTGATTAAACGTTTATTTATGTTTAATAAAAATGTAAAAGAAAGTGATTTTTAATAATAATTTAATTAAATATATAAAAATGTAATTTTTAAAAATTAAtttttttt      >  2:1900361/1‑126 (MQ=255)
                                                                                                                                ttt‑ACAAAAATATAATTTATTTGATTAAACGAATATTTATGTTTAATAAAAATGAAAAAGAAAGTGAATTTTAATAATAATTTAATTAAATATATAACAATTTAAGTTTTAAAACTTACTTTTTTGtt     >  2:7224414/1‑128 (MQ=255)
                                                                                                                                  t‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtttt   <  2:2207432/128‑1 (MQ=255)
                                                                                                                                     |                                                                                                                              
AGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑G‑‑TTTTT‑TTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTT  >  CP016816/420126‑420379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑