Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,3110CA32.6% 5475.7 / inf 2876intergenic (+275/‑267)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (664/1224);  new base A (780/132);  total (1516/1360)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2942 total aligned reads displayed.

ATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTAAA  >  CP016816/165181‑165438
                                                                                                                                   |                                                                                                                                  
   ttttttttATATATTTTTTTTTTATTTAAATTTTTAAAAAATTTATTTTAAATTTTAAAAAATTTCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATc                                                                                                                                    <  2:2800559/125‑1 (MQ=255)
       ttttattttttttttttttATTCAAATTTTTAAAAAATTAATTTGTAATTTTTAAAAAT‑‑‑TGTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑aaaaaa                                                                                                                            <  1:2203086/119‑1 (MQ=255)
        tttATATATTTTTTGTTTATTTAAATTTTTAAAAAATTTATTTTAA‑TTTTTTAAAATATTCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑aaaaa                                                                                                                             <  1:2769432/128‑1 (MQ=255)
        tttAGATATTTTTTGTATATTAAAATTTTTAAAAAATTATTTTTTAATTTTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑aaaaa                                                                                                                             <  2:5361347/128‑1 (MQ=255)
        tttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATTAAAA‑TTTTAGGTATTTTTTTGTATAATTATAT‑aaaa                                                                                                                              >  2:5962453/1‑128 (MQ=255)
        tttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAA‑TTTTAGTTATTTTGTTTTATAATTAT‑T‑aaaaaaa                                                                                                                           >  2:2388661/1‑128 (MQ=255)
             ttatTTTTTTTATATGCAAATTTTTTAAAAATTAAATTGAACTTGTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAg                                                                                                                        <  1:7736054/127‑1 (MQ=255)
             ttatTTTTTGTTTTTTAAAATTTTTAAAAAATTTATTTTGTATTTTTAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGa                                                                                                                       <  1:3288300/127‑1 (MQ=255)
                ttttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAATAATAAA‑TTTTATTTTTTTTTTTTTATAATTAAAT‑AAAAAAATATaaat                                                                                                                    >  2:6117005/1‑127 (MQ=255)
                 ttttttttTATTTAAATTTTTTAAAAATTAATTTTTAATTGTAAAAAA‑ATTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAg                                                                                                                    <  1:5496324/128‑1 (MQ=255)
                  ttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAT‑‑TTAAATTAAAAA‑TTTTTTGTTTTTTTTTTGATAATTAAAT‑AAAAAAATAGAAAgta                                                                                                                  >  1:2082871/1‑126 (MQ=255)
                    ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGAAATTAAAAA‑TTTTTTTAATTTTTTTTTAAAATTATAT‑AAAAAAAttaaaattaa                                                                                                                 >  2:1866122/1‑119 (MQ=255)
                     tttattTGTAATTTTTTTAAAAATTAATTTTAAATTTTTAAAAAATTTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGaa                                                                                                                 <  1:2955831/126‑1 (MQ=255)
                     tttataatcAAATATTTAAAAAATATATTTTAACTTTTAAAAAAAATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGaaa                                                                                                                <  1:7868210/120‑1 (MQ=255)
                     tttataTTTAAATTTTTAAAAAATTTATTTTTAATTTTAAAAAAAATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGaaa                                                                                                                <  1:2642822/126‑1 (MQ=255)
                     tttataTTAAAATTTTTAAAAAATTAAATTTAACTTTTAAAAAATTG‑ATTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGaaa                                                                                                                <  1:2339814/126‑1 (MQ=255)
                        atatGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑T‑ATTGAAAAATAAATTTTTTGTTTTTTTTTTTTATATTTATAT‑AAAAAAAAAAAATGAaaaaaa                                                                                                             >  2:7942828/1‑128 (MQ=255)
                          tattaaaTTTTTAAAAAAATATTTTTTACTTTTTAAAAATA‑ATCTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAata                                                                                                           <  2:3250651/124‑1 (MQ=255)
                           tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATGTAAAAAAAAA‑TTTTAGTATTTTTGTTGTATATGTTTCT‑AAAAAAATTTAAAGTaaaaattttt                                                                                                         >  1:5878590/1‑123 (MQ=255)
                             cAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAAAATGTAAATATAAA‑TTTTTTTTATTTTTTTTTATAATTATAA‑AAAAAAATAAAAAGTAAAAAATAtt                                                                                                         >  2:2258487/1‑128 (MQ=255)
                              aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATTAAAAAAAAAA‑ATTTATTTATTTTTTTTTATAATTAAAA‑AAAAAAAAAAAAAATaaaaaaaaattat                                                                                                      >  1:2549299/1‑121 (MQ=255)
                               aaTTTTTAAAAAATTTATTTTTATTTTTAATAAATATCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGt                                                                                                       <  2:2002545/128‑1 (MQ=255)
                                tttttTAAAAAATTTATTTTTAATTTTAAAAATTA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTaa                                                                                                    <  1:1482947/127‑1 (MQ=255)
                                       aaaaattaaatTTAAATTGTAAAAAAAAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAAt                                                                                            <  2:2943765/125‑1 (MQ=255)
                                         aaattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTTTTTTTTTGTATAATTTAAT‑AAAAAAATTTAAATAAAAAAATATTTTTAAaa‑taaata                                                                                           >  2:5687271/2‑128 (MQ=255)
                                           attaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTATTT‑TAATGGAAATATAAA‑TTTTATTTATTTTTTTGTATAAGTATAT‑AAAAAAATATAAAGTAAAAAATATTTTTAAAT‑TTATTACt                                                                                         >  2:3721790/1‑128 (MQ=255)
                                           attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAA‑TTTTAGGTATTTTTTTGTATAAGTATAT‑AAAAAAATAAAAAGTAAAAAAT‑TTTTTaaaatttattaata                                                                                        >  1:6392309/1‑118 (MQ=255)
                                            ttaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTTAATGTAAATATAAA‑TTTTTGGTTTTTTGTTGTATAATTTTAT‑AAAAAAATAGAATGTAAAATATTTTTTTAAAT‑GTAATaat                                                                                         >  2:3427642/1‑126 (MQ=255)
                                            ttaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAATTATAAT‑TTTTAGTTTTTTTTTTTTATAAGTTAAT‑AAAAAATTATAATGAAAAAATTATTTTTaaatttataatta                                                                                         >  2:2531549/1‑118 (MQ=255)
                                            ttaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAATGTAAATTAAAT‑TTTTTGGTATTTTTTTTGATAATTTTAT‑AAAAAAATAGAAAGTAAAAAATTTTTTTAAAA‑TTAATaaaa                                                                                        >  2:4296560/1‑125 (MQ=255)
                                             taattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTA‑AATTTAAAAAAAAA‑TTTTTGGTTTTTTTTTTTAAAATTTTAA‑AAAAAAAAATAAAAGAAAAAAATTTTTTAAAA‑TTaaaaaata                                                                                       >  2:6228203/1‑122 (MQ=255)
                                             taattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGTAAATAAAAT‑TTTTATGTATTTTTTTTTATATTTTTAT‑AAAAAATTATAAATAAAAAAATTTTTTTAAAT‑Ttaataataa                                                                                       >  2:1120437/1‑128 (MQ=255)
                                             taattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTTGGTTTTTTGTTGTGAAATTTTAA‑AAAAAAATTTAATGGAAAAATAATTGTTTAAA‑TTatatctaaa                                                                                      >  1:1621763/1‑120 (MQ=255)
                                                    aaCTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTGTAAATATAAA‑TTTTTTTTATTTTTTTGTATAATTTTAT‑AAAAAAATATAAATTAAAAAATTTTTTTAAAA‑TAAAAAATAAAATTAttt                                                                               >  2:395084/1‑128 (MQ=255)
                                                      attttAAAAAATTTTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTAttt                                                                               <  2:721413/124‑1 (MQ=255)
                                                          tAAAAAATAGCTTTTTTTTTTTTTTTTTTTTTATTGTAATTATAAT‑TTTTAGGTTTTTTTTTGTGTAATTTGAT‑AAAAAAATAATAAGATAAAAATTTTTTTAAAA‑TTAAAAATAAAatttttatatt                                                                           >  1:4145817/1‑123 (MQ=255)
                                                          tAAAAAATAGC‑TTTTTTTTTTTTTTTTTAAT‑ATTGAAAAATAAATTTTTTGGTATTTT‑TTTTAAAATTATCA‑AAAAAAATAATAAAGAAAAAATATTTTTAAAATTTAATAAAAAAATTTTTAAA‑ttt                                                                         >  1:7031246/1‑126 (MQ=255)
                                                           aaaaaaTAGC‑TTTTTTTTTTTTTTTTTAAAAATGAAAAAAAAAA‑TTTTAGATTTTTTTTGTTATAATTTTAT‑AAAAAAATAAAAAGAAAAAAATATTTTTAATA‑TAAAGATTAAATTTATTAAA‑tttt                                                                        >  1:3455039/1‑128 (MQ=255)
                                                            ttaaaaaatttcttttttttttttttttATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGtt                                                                        <  2:1554219/116‑1 (MQ=255)
                                                             aaaaTATC‑TTTTTTTTTTTTTTTTATATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATGGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGttaa                                                                      <  2:6986953/128‑1 (MQ=255)
                                                              aaaatattttttttttttttttttttATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TTttaa                                                                      <  1:7613998/121‑1 (MQ=255)
                                                              aaaTAGC‑TTTTTTTTTTTTTTTTTTATAATTGAAATTAAAA‑TTTTATTTATTTTTTTGTATAAGTATAT‑AAAAAAATATAATGGAAAAATTTTTTTTAAAA‑TTAATAATAAAATTATTTAA‑TTttatt                                                                     >  1:6711636/1‑126 (MQ=255)
                                                               aaTAGCTTTTTTTTTTTTTTTTTTAAAAAT‑TAAAAAAAAA‑ATTTATAAATTATTTTTTATAATAAAAT‑AAAAAAATAAAAATAAAAAAATATATTAAAAA‑AAAATAAAAAAATTATTTAA‑TTtaaatt                                                                    >  1:4595659/1‑128 (MQ=255)
                                                                aTAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAA‑TTTTAGGTATTTTTTTGTCTAAGTATAT‑AAAAAAATATAAAGAAAAAAAATTTTTTAAAA‑TTAATAATAAAATTATTTAA‑TGtaaatta                                                                   >  2:4147141/1‑128 (MQ=255)
                                                                aTAGC‑TTTTTTTTTTTTTTTTTTAAAATTTAAAATTAAA‑TTTTA‑TTATTTTTTTTTTAAATTAAATAAAAAAAATAAAAAGTAAAAAAATTTTTTAAAA‑ATAAAAATAAAATATTTTAa‑attaaatta                                                                   >  1:801465/1‑128 (MQ=255)
                                                                 tttttttttttttttttttttttATATTGTAAATATAAA‑TTTTAGGTATTTTGTTGTATAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGttaatta                                                                   <  2:5523014/124‑1 (MQ=255)
                                                                 attagttttttttttttttttttATTATTGAAATATTAT‑TTTTAGGTATTTTTTTGTCTAAGTATAT‑AAAAAAATAGTAAGGAAAAAATATTGTTAAAA‑GTAATAATAAAATTATTTAA‑TGttaatta                                                                   <  1:4019104/123‑1 (MQ=255)
                                                                 atattttttttttttttttttttATAATGGAAATATAAA‑TTATAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGttaatta                                                                   <  1:4435044/124‑1 (MQ=255)
                                                                    ttttttttttttttttttttATAATGTAAATATAAA‑TTTTAGGTATTTTGTTGTATAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTaaaa                                                                <  1:5338877/127‑1 (MQ=255)
                                                                     tttttttttttttttttttATAATTGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAAc                                                               <  2:58687/128‑1 (MQ=255)
                                                                     tttttttttttttttttttATAATGTTAATATAAA‑TTTTAGGTATTTTGTTGTATAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAAc                                                               <  1:4728431/128‑1 (MQ=255)
                                                                      ttttttttttttttttttATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACt                                                              <  1:1000140/128‑1 (MQ=255)
                                                                       tttttttttttttttttATAATGGAAATAAAAA‑TTTTAGGTATTTTTTTTTGTAATTATAT‑AAAAAAATAAAAAGTAAAAAATATTTTTAAAA‑TTAATAATAAAATTATTTAA‑TTTTAATTaaaaaat                                                             >  1:5982033/1‑125 (MQ=255)
                                                                        ttttttttttttttttATAATTGAAATATAAA‑TTTTTGTTTTTTTTTTGGATAAGTATCT‑AAAAAAATATAAAGGAAAAAATATTTTTAAAA‑TTAATAATAAAATTTTTTAA‑TTTTAATTAAAAATta                                                            >  1:1774649/1‑128 (MQ=255)
                                                                        ttttttttttttttttATAATTGAAATATAAA‑TTTTATGTATTTTGTTGTCTAAGTATAT‑AAAAAAATAGAAATGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTta                                                            <  2:3816334/128‑1 (MQ=255)
                                                                         tttttttttttttttATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAAGTTttaattaacattaa                                                            <  2:6551093/128‑7 (MQ=255)
                                                                          ttttttttttttttttAATGGAAATATAAA‑TTTTAGGTATTTTTTTTGCTAAGTATAA‑AAAAAAATAAAAATGAAAAAATATTTTTAAAA‑TTAATAATAAAATTTTTTAA‑TTTTAATTaaaaatataa                                                          >  1:3913908/1‑122 (MQ=255)
                                                                            ttttttttttttATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTtaaata                                                        <  2:5008735/128‑1 (MQ=255)
                                                                            ttttttttttttATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTtaaata                                                        <  2:6417216/128‑1 (MQ=255)
                                                                            ttttttttttttATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTtaaata                                                        <  1:4296560/128‑1 (MQ=255)
                                                                             tttttttttttATAATTGAAATATATA‑TTTTATGTATTTTGTTGTATAAGTATAT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTtaaataa                                                       <  1:5713677/128‑1 (MQ=255)
                                                                             tttttttttttATAATGGAAATATAAA‑TTTTATGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTtaaataa                                                       <  2:2102743/128‑1 (MQ=255)
                                                                             tttttttttttATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATATAAAGTAAAAAATATTGTTAAAA‑TTAATACTAAAATTAATTAA‑TTTTAATTAAAACTtaaataa                                                       >  2:3590645/1‑128 (MQ=255)
                                                                                 tttttttATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACa                                                   <  1:4902099/128‑1 (MQ=255)
                                                                                       tataATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAAt                                             <  1:3133452/128‑1 (MQ=255)
                                                                                        ataATGGAAATATAAA‑TTTTAGGTATTTTGTTGTATAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAAtt                                            <  1:985439/128‑1 (MQ=255)
                                                                                         taATTGTAATATAAA‑TTTTATTTATTTTGTTGTATAATTATAT‑AAAAAAATAGAAATTAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATta                                           <  2:4902654/128‑1 (MQ=255)
                                                                                           aTGGAAATATATA‑TTTTATGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATtaat                                         <  1:2460398/128‑1 (MQ=255)
                                                                                              gAAATATAAA‑TTTTAGTTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                                      <  2:4034658/128‑1 (MQ=255)
                                                                                                     aaa‑TTTTAGGTATTTTGTTGTATAAGTATAT‑AAAAAAATAGAAAGGATAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGtt                               <  1:1281652/128‑1 (MQ=255)
                                                                                                      aa‑TTTTATGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAATGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGttt                              <  2:6843036/128‑1 (MQ=255)
                                                                                                      aa‑TTTTAGTTATTTTGTTGTATAAGTATCT‑AAAAAAATAGAAATGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATAAATAAAAATAGttt                              <  2:7591128/128‑1 (MQ=255)
                                                                                                          tttATGTATTTTGTTTTATAAGTATAT‑AAAAAAATAGAAATGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                           <  1:1128939/128‑1 (MQ=255)
                                                                                                          tttAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                           >  2:7103316/1‑128 (MQ=255)
                                                                                                           ttAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatta                          >  1:7252740/1‑128 (MQ=255)
                                                                                                            tAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaa                         >  2:7489640/1‑128 (MQ=255)
                                                                                                            tAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGATAATTAAAACTTAAATAAAACATAAAAATAATAAAAATAGttaattaa                         >  1:373401/1‑128 (MQ=255)
                                                                                                             aGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaaa                        >  2:1295594/1‑128 (MQ=255)
                                                                                                              ggTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAAc                       >  1:195718/1‑128 (MQ=255)
                                                                                                              ggTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAAc                       >  1:6130081/1‑128 (MQ=255)
                                                                                                              ggTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAAc                       >  2:1455948/1‑128 (MQ=255)
                                                                                                                tATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTa                     >  1:3606794/1‑128 (MQ=255)
                                                                                                                  ttttGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   <  2:5167422/128‑1 (MQ=255)
                                                                                                                  ttttGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   >  2:1744688/1‑128 (MQ=255)
                                                                                                                  ttttGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   <  1:7452699/128‑1 (MQ=255)
                                                                                                                  ttttGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   >  1:7128801/1‑128 (MQ=255)
                                                                                                                  ttttGTTGTATAAGTATTT‑AAAAAAATAGTAATGAAAAAATATTGTTAAAA‑GTTATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   <  1:5092085/128‑1 (MQ=255)
                                                                                                                   tttGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAtt                  >  2:4730969/1‑128 (MQ=255)
                                                                                                                   tttGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAtt                  <  1:6914223/128‑1 (MQ=255)
                                                                                                                    ttgttgTCTAAGTATCT‑AAAAAAATAGAAAGGATAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt                 <  2:886000/128‑1 (MQ=255)
                                                                                                                    ttgttgTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt                 <  2:6676736/128‑1 (MQ=255)
                                                                                                                      gttgtCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTTAAA‑GTAATACTAAATTTATTTAA‑TGTTAATTAAAACTTAAATAAAAGATAAAATTAATAAAAATAGTTTATTAAACTAATTTCg               >  2:2662900/1‑128 (MQ=255)
                                                                                                                         gtCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAACATtaat                                         <  2:7711129/99‑1 (MQ=255)
                                                                                                                             aaGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAtt        <  2:460880/128‑1 (MQ=255)
                                                                                                                              aGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTta                                                            >  1:6231942/1‑75 (MQ=255)
                                                                                                                               gTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAtttt      >  2:3119081/1‑128 (MQ=255)
                                                                                                                               gTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAtttt      <  2:4441071/128‑1 (MQ=255)
                                                                                                                                tATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAttttt     >  2:7358722/1‑128 (MQ=255)
                                                                                                                                  tCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTaa   >  1:655383/1‑128 (MQ=255)
                                                                                                                                   cT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTaaa  <  2:785012/128‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                  
ATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAA‑TTTTAGGTATTTTGTTGTCTAAGTATCT‑AAAAAAATAGAAAGGAAAAAATATTGTTAAAA‑GTAATACTAAAATTATTTAA‑TGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTAAA  >  CP016816/165181‑165438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑