Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2500T.60.3% 971.7 / inf 2257intergenic (+214/‑328)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (458/402);  new base . (964/340);  total (1436/821)
Fisher's exact test for biased strand distribution p-value = 6.06e-23
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2725 total aligned reads displayed.

ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377
                                                                                                                                 |                                                                                                                               
ataataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑t                                                                                                                                 >  2:3559982/1‑128 (MQ=255)
   atatatAGTTTCATTAATTTATAGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATATTTTTAGATATTTTTTGTATATGAAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATATC‑tatt                                                                                                                              >  2:7798796/1‑128 (MQ=255)
    tatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTTAACTTGTAAAAAATATC‑ttttt                                                                                                                             >  1:4680775/1‑128 (MQ=255)
     atTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATATC‑tttttt                                                                                                                            >  2:1482947/1‑128 (MQ=255)
      tttATTTTAATTAATTTTTCGCAATTGTATTAATTATTAATAAACTAAAAATATTATATTTTTATATATTTTTTTTATATGCAAA‑TTTTTAAAAAATTAATTTTAAATTTTAAAAAATAGC‑ttttttt                                                                                                                           <  1:316712/128‑1 (MQ=255)
        tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGA‑ttttttttt                                                                                                                         >  1:7852922/1‑128 (MQ=255)
          gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑ttttttttttt                                                                                                                       >  2:1564297/1‑128 (MQ=255)
           tttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑tttttttttttt                                                                                                                      >  1:2803883/1‑128 (MQ=255)
             tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑atttttttttttat                                                                                                                    >  1:4346321/1‑126 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAATAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAAATAATTTGAACTTGTAAAAAAAAGC‑tttttttttttttttt                                                                                                                  <  2:5887679/128‑1 (MQ=255)
                  aaTTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑tttttttttttttttttta                                                                                                               >  2:220139/1‑127 (MQ=255)
                     ttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑tttttttttttttttttaatga                                                                                                            >  2:6439205/1‑123 (MQ=255)
                             cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTT‑TAATGTTAata                                                                                                   >  1:6358853/1‑128 (MQ=255)
                              ttttttttattattAATAAAATAAAAATATTATTTTTTTTTATATTTTTTGTATATTCAAA‑TTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAAtata                                                                                                 <  2:7476027/120‑1 (MQ=255)
                              ttGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTtattattgaaatataa                                                                                                   >  1:7281422/1‑118 (MQ=255)
                                ttattaattattaatAAACTAAAAAAATTATTTTTTTTTTTATTTTTTTTATTTTCAAA‑TTTTTAAAAAATTAATTTTAAATTTTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATaa                                                                                                <  1:5850566/127‑1 (MQ=255)
                                 tATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTATAATTTAAataaa                                                                                                 >  1:4872958/1‑126 (MQ=255)
                                 tATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAT‑ATTTAAATATaaa                                                                                               >  1:4192492/1‑128 (MQ=255)
                                  aTGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATttaaatttaaat                                                                                              >  2:5430826/1‑128 (MQ=255)
                                  aTGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAAt                                                                                              >  2:4732396/1‑128 (MQ=255)
                                   tGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTT‑TAATGTAAATATAAAtt                                                                                             >  1:6487164/1‑128 (MQ=255)
                                   attattattAACAAACAAAAAATATTATTTTTTTATTAAATTTTTTTATAATCAAA‑ATTTTTAAAAATTAATTTTTAAATTTAAAAAA‑ATC‑GTTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                             <  2:6847090/125‑1 (MQ=255)
                                    taaTTATTAAAAAAATAAAAATATTATTTTTTTATATATTTTTTGTATATTCAAA‑TTTTTAAAAAATTAATTTTTACTTTTAAAAAAAAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                             <  1:4068977/127‑1 (MQ=255)
                                       ttattaAGAAAATAAAAATATTATATTTTTATATATTTTTTTTATATTAAAA‑TTTTTAAAAAAATAATTTGAAATTGTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAg                                                                                         <  2:4621973/128‑1 (MQ=255)
                                        ttttaattaaataaaaattTTTTTTTTTTATATTTTTTTTTTATTTTCAAA‑TTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                       <  1:171838/117‑1 (MQ=255)
                                         aatatgaataaaaaactaTTTTATTTTTTGTATTTTTTTTTATATTTAAA‑TTTTTAAAAAATTAATTTGTAATTGTAAAAATTATT‑CTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAgg                                                                                        <  2:1713898/117‑1 (MQ=255)
                                         aGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTAAAATATAATTTTTATGt                                                                                       >  2:7683839/1‑128 (MQ=255)
                                         aGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTa                                                                                      >  1:1969908/1‑128 (MQ=255)
                                         aGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATATGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAAAAGTAAATATAAATTTTatg                                                                                        >  1:1003399/1‑126 (MQ=255)
                                           ttaacaaataaaaataTTATATTTTTTTTTTTTTTTTTTTAATTTAAATTTTTTAAAAAATAAATTTTAA‑TTTTAAAAAAAATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAt                                                                                     <  1:6110839/120‑1 (MQ=255)
                                               taacttaaaataATATATTTTTATTTATTTTTTTTTTATTCTAA‑ATTTAAAAAAATAATTTTGTAATTTTATAAAA‑AAT‑TTTTTTTTTTTTTTTTTTTTTAATGGAAATATAAATTTTAGGTATTttg                                                                                 <  1:3300145/127‑1 (MQ=255)
                                               aaaaaaaaaataTTTTCTTTTTTTTTATTTTTTTTATATTAAAA‑TTTTTAAAAAATTAATTTTAAATTTTAAAAAA‑AAT‑ATTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttg                                                                                 <  1:2643393/123‑1 (MQ=255)
                                                  ctaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTT‑TAATGTAAATTTAAATTTTATGTATttttttt                                                                              >  2:2504959/1‑127 (MQ=255)
                                                     aattttttatttttttttatttttttTGTTTTTTCTAA‑TTTTTTAAAATTTATTTTTAAATTTTTAAAAAT‑TT‑GTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCt                                                                           <  1:5235203/122‑1 (MQ=255)
                                                      aaatattttCTTTTTAGTTATTTTTTGTTTTTGCAAA‑ATTTTAAAAAATTAATTTGAAATTGTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                         <  1:7556853/125‑1 (MQ=255)
                                                        atattttTTTTTTATATATTTTTTTTTTTTTTAAA‑TTTTTAAAAAATTTATTTTAAATTTTTAAAAA‑‑‑‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAt                                                                     <  1:1183515/127‑1 (MQ=255)
                                                         tattatTTTTTTATTTTTTTTTTTTTTATGAAAA‑ATTTTAAAAAATTAATTTTAAATTTTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGt                                                                       <  1:6611385/128‑1 (MQ=255)
                                                           ttatATTTTTATATATTTTTTTTTTATCAAAA‑TTTTTAAAAAATTAATTTTAAATTTTAAAAAATAG‑‑‑GGTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                    <  2:2362187/128‑1 (MQ=255)
                                                            tatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTT‑‑‑TAATTTAAATTTAAATTTTAAGTATTTTTTTTTATAATtatata                                                                  >  1:2959005/1‑128 (MQ=255)
                                                               cTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTTTTTTATAATtatata                                                                  >  2:6566522/1‑128 (MQ=255)
                                                                 ttttAGATATTTTTTGTATATGCAAA‑TTTTTGAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTA‑AATTAAAATAAAAATTTTAGTTATTTTTTTTTATaatatattaaaa                                                               >  2:2905170/1‑118 (MQ=255)
                                                                 ttttAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATATTGTAAATATAATTTTTAGTTATTTTGTTTTCTattttagtata                                                                >  2:7088503/1‑118 (MQ=255)
                                                                 ttttAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAATAAAGTAAAAATAAATTTAAGTAATTTTGTTGTCAAAGTATATaaaa                                                               >  2:1958554/1‑128 (MQ=255)
                                                                     tgATATTTTTTGTATTTTCAAA‑TTTTTAAAAAATTAATTTTTAATTTTAAAAAATATG‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa                                                            <  2:1834256/127‑1 (MQ=255)
                                                                      tttatTTTTTTTTTATTGAAT‑TTTTTAAAAAATTAATTTTAAAATGTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATa                                                          <  1:3949718/126‑1 (MQ=255)
                                                                      tatatTTTTTTTATTTTGAAT‑TTTTTTAAAAATTAATTTGTACTTGTAAAAAATTTC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATa                                                          <  2:4455166/127‑1 (MQ=255)
                                                                       atatTTTTTTTATATTCAAA‑TTTTTAAAAAATTAATTTTTACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                        <  2:6134415/128‑1 (MQ=255)
                                                                         tttttttttttATTTAAA‑TTTTTTAAAAATTTATTTTTAATTTTTAAAAATTTT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                        <  2:2637710/127‑1 (MQ=255)
                                                                          ttttttttttATTTAAA‑TTTTTTAAAAATTAAATTTTAATTTTTAAAAATA‑T‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGaaa                                                      <  1:4505559/128‑1 (MQ=255)
                                                                              tttttaattcAAA‑TTTTTAAAAAATTAAATTTTACTTTTAAAAAATACA‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGa                                                   <  1:7041960/119‑1 (MQ=255)
                                                                              ttGTATATTCAAA‑TTTTTTAAAAAATAATTTTAAATTTTAAAAAATATC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGa                                                   <  2:7567412/128‑1 (MQ=255)
                                                                              ttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTTTTTTATAATTTTATAAAAAAATATAAAgta                                                   >  2:4856887/1‑126 (MQ=255)
                                                                              ttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATTTAAATTTTAGTTATTTTGTTGTATAAGTTTATAAAAAAATTTAAAGTaaa                                                 >  2:792348/1‑128 (MQ=255)
                                                                               tGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTAAAATGAAAATAAAAATTTTAGTTATTTTTTTTTAAAATTATAaaaaaaaaaaaaaattaa                                                  >  1:1803851/1‑124 (MQ=255)
                                                                                 ttttttataatttttTAAAAATTTAATTTTAA‑TTTTTAAAAATA‑T‑TTTTTTTTTTTTTTTTTTTTTAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaaa                                               <  2:6986134/117‑1 (MQ=255)
                                                                                 tataTGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTAGTTATTTTTTTTTATAATTATAAAAAAAAATAAAAATaaaaaa                                               >  1:3787499/1‑128 (MQ=255)
                                                                                 tataTGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATATTGTAAATATAAATTTTAGTTATTTTTTTTTATATTTATATAAAAAAATAAAAAGTaaaaaa                                              >  1:5039430/1‑128 (MQ=255)
                                                                                   tatGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATTTAAATTAAAATTTTATTTATTTTTTTTTAAAATTATATAAAAAAATAAAAAGAaaaaaa                                              >  2:2077243/1‑128 (MQ=255)
                                                                                   tatGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATATTGGAAATATAAATTTTAGTTATTTTGTTGTATAAGTATCTAAAAAAATAGAAAGTAAAAAattt                                           >  1:841652/1‑126 (MQ=255)
                                                                                    tattaaa‑TTTTTAAAAAAATATTTTTTACTTTTTAAAAATA‑A‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAata                                            <  2:3250651/124‑1 (MQ=255)
                                                                                     tttaaatttttTAAAAATTTATTTTTAATTTTTAAAAATTTTT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                             <  1:1500455/121‑1 (MQ=255)
                                                                                     tGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTT‑TAATATAAATATAAATTTTAGTTTTTTTTTTTTTTAATTTTATAAAAAAATATAAATGataaaaatt                                           >  2:418518/1‑125 (MQ=255)
                                                                                      gCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTGTTTTCAAAGTAACTAAAAAAATAGAAATGAAAAAATAttt                                         >  1:3495013/1‑127 (MQ=255)
                                                                                       cAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATATTTGAAATATAAATTTTAGGTATTTTGTTGAATAAGTTTAAAAAAAAATATAAAGGAAAAattattt                                         >  1:2549534/1‑127 (MQ=255)
                                                                                       cAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTGTTTTATAATTATAAATAAAATTATAATTTAAAAattattt                                         >  1:7148356/1‑127 (MQ=255)
                                                                                       cAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTAAAATGAAAATATAAATTTTTGTTATTTTTTTTTATAATTATGAAAAAAAATAAAAAGAAAAAAAttttt                                         >  2:3929420/1‑127 (MQ=255)
                                                                                        aaa‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTAATTTTTTTTTATAATTATATAAAAAAATAAAAAGTaaaaaaaaatttta                                      >  1:2330781/1‑120 (MQ=255)
                                                                                          a‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAATTTTTAGTTATTTTTTTGTATATTTATTATAAAAAATATAAAGTAAAAAATAttttat                                      >  2:1145072/1‑124 (MQ=255)
                                                                                          a‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATTTTTTTTTATAATTAAATAAAAAAATAAAAAGTAAAAAATATTTTTaaa                                    >  1:6916449/1‑128 (MQ=255)
                                                                                             tttAAAA‑AATTAATTTTAAATTTTAAAAAATAG‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTaaaa                                   <  1:6233809/128‑1 (MQ=255)
                                                                                             tttAAAA‑AATTAATTTGAAATTGTAAAAATTATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTaaaa                                   <  2:6262843/128‑1 (MQ=255)
                                                                                                taaaaaaTTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTTTAATGGAAATAAAATTTTTTGTTATTTTTTTTTATAATTTTATAAAAAAATATAAAGTAAAAAATTTTTTTAAAAg                                  >  2:7353350/2‑128 (MQ=255)
                                                                                                taaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATTTTTTTGTATAATTATATAAAAAAATATAAAGTAAAAAATATTGTTaaaata                                 >  2:3417804/2‑126 (MQ=255)
                                                                                                 aaaaaaTTTATTTTAAATTTTAAAAAATATC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGt                                 <  2:867142/128‑1 (MQ=255)
                                                                                                 aaaaaaTTAATTTTTAATTTTAAAAAAT‑TT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTa                                <  1:3652490/128‑1 (MQ=255)
                                                                                                 aaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATTATGTAAATATAATTTTTTTTTTTTTTTTTTTATAATTATAAAAAAAAAATAAAAAGAAAAAATATTTTAAAAAGTaa                               >  1:7710029/1‑128 (MQ=255)
                                                                                                     aatttattTTTAATTTTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAc                            <  1:7441151/128‑1 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTAAAAAAAAAATTTTAATAATTTTTTTTTATAAATAAATAAAAAAATATAAAATAAAAAAATTTTTTAAaataaataa                            >  1:56204/1‑127 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTATAAGTATATAAAAAAATATAAAGTAAAAAATATTTTTAAAATTAATACTaa                         >  1:5947794/1‑128 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGTTATTTTTTTTTATAATTTTATAAAAAAATAAAAATTAAAAAATATTTTTAAAATTAATaat                           >  2:3656460/1‑126 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTTTTTTGTTTTATATGTTTATATAAAAATATAAATTAAAAAATATTTTTAAAAGTataaat                           >  2:5743109/1‑123 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTCTTTTTTTTTTTATAATGTAAATATAATTTTTAGGTTTTTTTTTTTCTATTTTTGTAAAAAAATAAAAAGAAAAAAATATTTTTAAAAGTATTaaa                           >  2:557666/1‑126 (MQ=255)
                                                                                                        taattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAATTTTTAGGTATTTTGTTTTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTTTTAAAATTAAAAATaa                         >  2:5981413/1‑128 (MQ=255)
                                                                                                              taaattttAAAAAATA‑‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAattatt                  <  2:6679624/121‑1 (MQ=255)
                                                                                                              gAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTATGTTTTTTTTTGTATAATTATATAAAAAAATATAATGTAAAAATTATTTTTAAATTTAATACTAAAattat                   >  2:1338827/1‑128 (MQ=255)
                                                                                                               aaCTTGTAAAAAATAGC‑‑TTTTTTTTTTATTTTTTTAAAAAAGAATAATAAATTTAAGTTATTTTGTTTAAAAATTAAAAAAAAAAAAATAAAATAAAAAATATTTTATAAATTAATAAAAAAattatt                  >  2:2773576/1‑128 (MQ=255)
                                                                                                                 tttGTTAATAATAGT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                 <  1:2153468/127‑1 (MQ=255)
                                                                                                                 attttAAAAAATTTT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                 <  2:721413/124‑1 (MQ=255)
                                                                                                                  ttGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTAAAATGGAAATATAAATTTTATGTATTTTGTTGTCAAAGTTTATAAAAAAATAGAAAGGTAAAAATATTTTTAAAAGTAAAACTAAAATTATTAAAt              >  2:4994622/1‑128 (MQ=255)
                                                                                                                     tAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAAGTATTTTTTTGTATATTTTTAAAAAAATATAAAATTTTAAAAATATTTTTAAAATAAATAATAAAA‑TATTTaaattt           >  2:378827/1‑124 (MQ=255)
                                                                                                                     tAAAAAATAGCTTTTTTTTTTTTTTTTTTTTTTATTGGAATTTTAATTTTTAGTTTTTTTTTTTTATATTTTAATAAAAAAATAATAATATAAAAATATTTTTAAAATTAATAATTAAAATATTTaaa              >  2:3110153/1‑127 (MQ=255)
                                                                                                                     atttaaaaaatttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt              <  1:6755461/116‑1 (MQ=255)
                                                                                                                       tttataattttttttttttttttttttttATAATTGAAATATAAATTTTATGTATTTTGTTGTATAATTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGt            <  1:5377451/118‑1 (MQ=255)
                                                                                                                       taaaaTATA‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGtt           <  2:4033655/127‑1 (MQ=255)
                                                                                                                           aatttttttttttttttttttttttATAATTGAAATATTAATTTTAGGTATTTTGTTGTATTAGTATATAAAAAAATAGTAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaat        <  1:1335256/122‑1 (MQ=255)
                                                                                                                            tAGC‑TTTTTTTTTTTTTTTTTAT‑TAAGGTAATTAAAAATTTAAGGTATTTTTTTGTATAAGTATATAAAAAAATAAAAATTAAAAAATTTTTTTAAAAGTTAAATAAAAAATTTTAAATGttaataaa     >  2:5159859/1‑128 (MQ=255)
                                                                                                                             tttttttttttttttttttttttATAATTGTAATATTAATTTTATGTATTTTGTTTTATAAGTATATAAAAAAATAGAAATTAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta      <  2:1034481/124‑1 (MQ=255)
                                                                                                                             tttttttttttttttttttttttATAATTGAAATATAAATTTTAGGTATTTTGTTGTATAATTATCTAAAAAAATAGAAATTAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta      <  2:5295918/124‑1 (MQ=255)
                                                                                                                             tatttttttttttttttttttttATAATGTAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta      <  2:4307806/124‑1 (MQ=255)
                                                                                                                             aatttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta      <  1:2456569/124‑1 (MQ=255)
                                                                                                                                 |                                                                                                                               
ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑