mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 83 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 111,467 | 0 | G | T | 66.9% | 4220.6 / inf | 4845 | V93F (GTT→TTT) | JCVSYN2_00450 | ABC transporter ATP‑binding protein |
| * | CP016816 | 245,262 | 0 | G | T | 66.0% | 3686.2 / inf | 4363 | V1631L (GTA→TTA) | JCVSYN2_01035 | ABC transporter permease |
| * | CP016816 | 202,485 | 0 | T | . | 65.0% | 434.0 / inf | 855 | intergenic (+263/‑412) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 436,792 | 0 | C | A | 64.8% | 2897.9 / inf | 4867 | R302I (AGA→ATA) | JCVSYN2_01985 | glycosyl transferase |
| * | CP016816 | 311,150 | 0 | A | . | 64.4% | 523.2 / inf | 549 | intergenic (‑73/‑241) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| * | CP016816 | 311,149 | 0 | T | . | 63.3% | 478.8 / inf | 544 | intergenic (‑72/‑242) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| * | CP016816 | 165,250 | 0 | T | . | 61.4% | 1701.9 / inf | 2948 | intergenic (+214/‑328) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 203,895 | 1 | . | T | 58.6% | inf / inf | 1266 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 105,339 | 0 | T | G | 55.0% | 2643.6 / inf | 2588 | intergenic (+834/+92) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 202,486 | 0 | T | . | 52.4% | 656.5 / inf | 853 | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,494 | 0 | A | T | 44.0% | 445.8 / inf | 848 | intergenic (+272/‑403) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 420,253 | 0 | C | A | 43.7% | 2797.1 / inf | 3364 | intergenic (‑536/+307) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 202,477 | 0 | C | A | 42.0% | 1075.4 / inf | 1127 | intergenic (+255/‑420) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,912 | 0 | G | T | 38.9% | 1964.0 / inf | 1570 | intergenic (+296/+162) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,496 | 0 | A | . | 37.4% | 592.0 / inf | 560 | intergenic (+274/‑401) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 437,881 | 0 | A | . | 37.2% | inf / inf | 2056 | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 202,487 | 0 | T | . | 36.1% | 706.0 / inf | 851 | intergenic (+265/‑410) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,488 | 0 | T | . | 35.6% | 717.0 / inf | 839 | intergenic (+266/‑409) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 437,882 | 0 | T | . | 35.4% | inf / inf | 2056 | intergenic (‑186/+236) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 478,682 | 0 | C | T | 35.3% | 4960.0 / inf | 4354 | E320K (GAA→AAA) | JCVSYN2_02210 | DNA‑directed RNA polymerase subunit beta' |
| Marginal new junction evidence (lowest skew 10 of 162 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | 437885 = | 2751 (0.620) | 342 (0.100) | 147/204 | 9.4 | 13.9% | intergenic (‑189/+233) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437880 | 2010 (0.560) | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 165253 = | 3043 (0.680) | 832 (0.210) | 153/220 | 10.2 | 24.8% | intergenic (+217/‑325) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | = 165249 | 2395 (0.620) | intergenic (+213/‑329) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | = 437880 | 1416 (0.410) | 962 (0.220) +ATAT |
113/188 | 12.8 | 34.3% | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437881 = | 1984 (0.450) | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 76896 = | 4388 (0.990) | 281 (0.070) | 124/226 | 14.7 | 6.9% | intergenic (‑145/+40) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein |
| ? | CP016816 | = 76892 | 3643 (0.910) | intergenic (‑141/+44) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein | |||||
| * | ? | CP016816 | = 203895 | 890 (0.230) | 556 (0.130) +TTT |
107/214 | 16.2 | 35.7% | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| ? | CP016816 | 203896 = | 1032 (0.230) | intergenic (+280/+178) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase | |||||
| * | ? | CP016816 | = 311168 | 424 (0.100) | 334 (0.080) | 124/252 | 16.7 | 44.7% | intergenic (‑91/‑223) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | 311172 = | 402 (0.090) | intergenic (‑95/‑219) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||
| * | ? | CP016816 | = 311170 | 402 (0.090) | 334 (0.080) | 123/252 | 16.8 | 46.8% | intergenic (‑93/‑221) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | 311174 = | 357 (0.080) | intergenic (‑97/‑217) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||
| * | ? | CP016816 | 105365 = | 2877 (0.650) | 224 (0.060) | 103/222 | 17.5 | 8.1% | intergenic (+860/+66) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| ? | CP016816 | = 105361 | 2518 (0.640) | intergenic (+856/+70) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase | |||||
| * | ? | CP016816 | = 202486 | 342 (0.080) | 709 (0.160) | 114/252 | 18.1 | 65.9% | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| ? | CP016816 | 202490 = | 391 (0.090) | intergenic (+268/‑407) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein | |||||
| * | ? | CP016816 | 370479 = | 4551 (1.020) | 145 (0.040) | 93/212 | 18.3 | 3.7% | coding (109/309 nt) | JCVSYN2_01610 | hypothetical protein |
| ? | CP016816 | = 370475 | 3784 (1.010) | coding (105/309 nt) | JCVSYN2_01610 | hypothetical protein | |||||