Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA42.0% 1075.4 / inf 1127intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (374/267);  new base A (122/342);  total (501/626)
Fisher's exact test for biased strand distribution p-value = 1.07e-26
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1254 total aligned reads displayed.

AAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAATCCCCTTTTAAAA‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATA  >  CP016816/202349‑202606
                                                                                                                                 |                                                                                                                                    
 tagtattTAAGTTAGTTTAATTAATAGAGTTAAGGTTAATTAAAATACAATAAACATAATAATTCTTATAATGTAGATCCTCGTGATCTTTTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAAc                                                                                                                                      <  1:2904222/127‑1 (MQ=255)
 aagtaGTGAAGTTATGGTAAAAAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAAc                                                                                                                                      <  2:2308204/128‑1 (MQ=255)
 aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAAc                                                                                                                                      >  2:2090173/1‑128 (MQ=255)
  aggagtGAAGTTACTGGTAATAATAGAGGTAAGGTTAATTAAAATACCATAAACTTAAAAATTCTTAAAATGTAGATCCTCGTGCTCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACa                                                                                                                                     <  1:649533/125‑1 (MQ=255)
   gtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTATTTATCTTCAC‑AAATAAAAAAAAAACaa                                                                                                                                    >  1:8714567/1‑128 (MQ=255)
    tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTTATATGTTTATCATAAC‑AAATAaaaaaaaaaaaaa                                                                                                                                   >  2:4573701/1‑127 (MQ=255)
    tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACaaa                                                                                                                                   >  2:2460433/1‑127 (MQ=255)
     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTGTTTATCTTCAC‑AAATAaaaaaaaaaaaaac                                                                                                                                  >  1:4782980/1‑126 (MQ=255)
     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTATTATAATATATATAATAAATATCTATTATTTTATAAATTAAAATTAAA‑AAATAaaaaaaaaaaaaaa                                                                                                                                  >  2:7081013/1‑126 (MQ=255)
      gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGTTCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAATcc                                                                                                                                 <  2:4750711/128‑1 (MQ=255)
      gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAATcc                                                                                                                                 <  1:695013/128‑1 (MQ=255)
       tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAAATTATATCATCTTAATCTATTTTATTATTATTTAATATAAAC‑Aaaaaaaaaaaaaaaaaaaca                                                                                                                                >  2:3732660/1‑124 (MQ=255)
       tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAAATTAATAAATATTATAATGTAGATAATATTTATATATTTTATAATTTTATTATATTAAA‑AAATAAAAAAAAAACAAtaca                                                                                                                                >  2:3423116/1‑125 (MQ=255)
        gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATTTTAATCTTCAC‑AAATAAAAAAAAAAAAAtaaaa                                                                                                                               >  1:3427303/1‑124 (MQ=255)
         aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAATCCCCt                                                                                                                              <  2:8338962/128‑1 (MQ=255)
          aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAAATACTCTTTATCTATATTTTTATTTGTTTATATTCAC‑AAATAAAAAAAAAAAAAAccaaat                                                                                                                             >  2:1702734/1‑124 (MQ=255)
           tttAGTTTAAATAATAGATTTAAGGTTAATTAAAAAACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCAA‑AAATAAAAAAAAAACAATCCCCtta                                                                                                                            <  2:4023569/127‑2 (MQ=255)
           gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTATTAATCTTCAA‑AAATAAAAAAAAAACaaaacaataa                                                                                                                            >  2:3137819/1‑120 (MQ=255)
           gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCAC‑AAATAAAAAAAAAACAATCCCCtta                                                                                                                            >  2:7573327/1‑127 (MQ=255)
           gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAATCCACtta                                                                                                                            >  1:3262083/1‑127 (MQ=255)
            ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATACTCGAGATCTATTTTTTTATTTGATTAAATTAAC‑AAATAAAAAAAAAACaaaaaactaaa                                                                                                                           >  2:659182/1‑119 (MQ=255)
            ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAAAAATcacataaa                                                                                                                           >  1:7681315/1‑121 (MQ=255)
            ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTATATTTGTTTATATTCAC‑AAATAaaaaaaaaaaaaacacaaaaa                                                                                                                           >  2:1902787/1‑119 (MQ=255)
             tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCAC‑AAATAAAAAAAAAAAAATacccaaaaa                                                                                                                          >  2:6152185/1‑123 (MQ=255)
              aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAATCACCttaaaa                                                                                                                         >  1:8580796/1‑124 (MQ=255)
              aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAAAGTAAATCATAGTTATCTATTTATTAATTTGTTTATCTTAAC‑AAATAaaaaaaaaaaaaaacactaaaaa                                                                                                                         >  2:786149/1‑117 (MQ=255)
               gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATACTCGTGATCTATTTTTATATTTGATTATCTTCAC‑AAATAAAAAAAAAACaaaaccaataaaaa                                                                                                                        >  2:2914467/1‑116 (MQ=255)
               gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAAAACCCttaaaaa                                                                                                                        >  1:7226978/1‑123 (MQ=255)
                     ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGCTCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAATCACC‑‑Ttaaaa‑tataaaa                                                                                                               >  2:8609081/1‑128 (MQ=255)
                         taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATATTTTTATTAGTTTATCTTCAC‑AAATAAAAAAAAAACAAAACCC‑‑‑TAAAA‑AATaaaaaaaaa                                                                                                          >  1:2435746/1‑128 (MQ=255)
                              ttAAGTTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTATTTTATCTACAC‑AAATAAAAAAAAAAAAAACCCATAaaaaaa‑aaaaaaaaaaaaaa                                                                                                        >  2:2608469/1‑128 (MQ=255)
                              ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCAC‑AAATAAAAAAAAAACAATCAC‑‑‑ATAAAA‑AATtaaaaaaaaaaaaa                                                                                                     >  2:886139/1‑128 (MQ=255)
                                aacgTTAATTAAAAAACCATAAAATTAATAATTAATAAAAAGTAGATCCACCTTATCTATTTTTTTATTTTTTTATCTACAC‑AAATAAAAAAAAAACAAACCCC‑‑TTAAAA‑ATTaaaaaaaaaaaaaaa                                                                                                    <  1:568416/125‑1 (MQ=255)
                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAAACCCAaaaaaaaa‑aaaaaaaaaaaaaaaa                                                                                                      >  2:4398527/1‑128 (MQ=255)
                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAATCAC‑‑ATTAAAA‑ATTaaaaaaaaaaaaaaa                                                                                                    >  1:7759873/1‑128 (MQ=255)
                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAAAAATCAC‑‑ATTAAAA‑ATTaaaaaaaaaaaaaaa                                                                                                    >  1:7277164/1‑128 (MQ=255)
                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAA‑AAAATCCACTTAAAA‑ATTaaaaaaaaaaaaaa                                                                                                     >  1:9341050/1‑128 (MQ=255)
                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTCAC‑AAATAAAAAAAAAACAAACCACATaaaaaa‑aaaaaaaaaaaaaaaa                                                                                                      >  1:7940908/1‑128 (MQ=255)
                                 atgTTAAATAAAATAAAATAAAATTAATAAATATTAAAATTTATATCATATTTTTAATTTTTTTTATTTTTTTAAAATAAC‑AAAAAAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATTaaaaaaaaaaaaaaaa                                                                                                   <  1:915281/126‑1 (MQ=255)
                                 aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAAAAAACAC‑‑‑ATAAAA‑AATaaaaaaaaaaaaaaaaa                                                                                                  >  2:5352703/1‑128 (MQ=255)
                                  ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTaaaaaaaaaaaaaaaaa                                                                                                  >  1:8636913/1‑128 (MQ=255)
                                  ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTATTTTATCTTCAA‑AAATAAAAAAAAAAAAAAACAATT‑‑‑AAA‑AATaaaaaaaaaaaaaaaaaa                                                                                                 >  2:4175821/1‑128 (MQ=255)
                                  ggTTAATAAAAATACCATAAACTTAATAATACTTATAATGTAAATCATAAATATCTATTTTTTTATATGTTTATATTAAC‑AAATAAAAAAAAAACAATCC‑‑‑AATAAAA‑AATtaaaaaaaaaaaaaaaaa                                                                                                 >  2:518190/1‑128 (MQ=255)
                                   tttaattaaAAAAAAATAAATATAAAAATTTATTTAATTTATATACTTTTTTTTTTTTTTTTTTTTTTTTTATTTTAAA‑AAATAAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATTaaaaaaaaaaaaaaaaaa                                                                                                 <  2:9463212/127‑1 (MQ=255)
                                   gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCAA‑AAATAAAAAAAAAAAAATAAC‑‑ATTAAAA‑ATTaaaaaaaaaaaaaaaaaa                                                                                                 >  1:2528845/1‑128 (MQ=255)
                                    ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAAAAA‑‑AACAATTAAAA‑ATTaaaaaaaaaaaaaaaaaaa                                                                                                >  2:599076/1‑128 (MQ=255)
                                     taattaaAAAACAATAAACTTAATAATTCTTATAATAAAGATAATCCTTATCTATTTTATAATAAATTTAAAATAAA‑AAATAAAAAAAAAAAAAACAAC‑‑‑AAAAA‑AATaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:5669663/1‑128 (MQ=255)
                                       attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTATTATCTTCAC‑AAATAAAAAAAAAAAAATCACATTAAAAAT‑Aaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:3621110/1‑128 (MQ=255)
                                       attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAAAAATCCC‑‑‑ATAAAA‑AATaaaaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:5001451/1‑126 (MQ=255)
                                       attaaAATACCATAAACTTAATAATTCTTATAATGTAAATCCTCGATATCTATTTTTAAATTTGATTAAATTAAC‑AAATAAAAAAAAAAAAAACCCaaaaaaaaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:5041155/1‑128 (MQ=255)
                                        ataaaataaaataaaaTTAAAAAATTTTATAATTTATTTCCTCTGTTTTTTTTTTTTTTTTTTTTTTTATTTAA‑AAATAAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATTaaaaaaaaaaaaaaaaaaaaaac                                                                                            <  2:3308351/127‑3 (MQ=255)
                                          aaaaTAACATAAACTTAATAATTATTAAAATGTATTAACCCGTGATCTATTTTTTTATTTGTTTATATTCAC‑AAAAAAAAAAAAACCAATCCCCTT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTaaa                                                                                         <  2:1221630/128‑1 (MQ=255)
                                           aaaTAACAAAAAATTAATAATTATTATAATTTTGTACCACGTGATTTTTTTTTTTATTTGTTTTTATTCAC‑AAAAAAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTaaa                                                                                         <  2:8228397/128‑1 (MQ=255)
                                              taaaaTAAAAATAATAATTTTAATAATTTATATACTATTTATATATTTTTTTTTTTTTTTTTATTAAA‑AAATAAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                    <  1:4575949/124‑1 (MQ=255)
                                                ccATATAATTAATAATTATTAAAATGTATAATCTATTTATAAATTTTATTAATTATTTATATTAAA‑AAAAAAAAAAAAAAAAAACCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAAct                                                                                 <  1:6232448/128‑1 (MQ=255)
                                                acATAAAATTAATAATATATAAAATTTTTAACCTCGTTTTCTATTTTTTTATTTTTTTATCTTAAC‑AAAAAAAAAAAAAACAAACCCC‑TTAAAAA‑ATAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                     <  1:5206587/127‑1 (MQ=255)
                                                aaaTAAACTTATATATTCTTATAATTTATATCATCTTTTTCTTTTTTTTTATTTTTATATATTAAA‑AAATAAAAAAAAAAAAAATCCC‑CTTAAAA‑AATAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                     <  1:271781/126‑1 (MQ=255)
                                                       cTTAATAAATATTATAATGTATATCCTCTTTATATATTTTTTTATTTTTTTATCTTAAA‑AAAAAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                             <  1:8454742/128‑1 (MQ=255)
                                                                      aaTGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAACCAATCCCCTT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAAAAAACAATTTTTTTTAAAAtacgaaa                                                             >  1:7553469/1‑122 (MQ=255)
                                                                          tAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAATCCCCTT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACAATATGTATTAACATTcccatttaa                                                         >  2:957242/1‑122 (MQ=255)
                                                                           atatccaacttttCTATTTTTTTATTTTTTTTTATTAAA‑AAAAAAAAAAAAAAAAAAACC‑‑ATTAAAA‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta‑ttat                                                        <  1:1194953/116‑1 (MQ=255)
                                                                            aaaccTCTTGATATATTTTTTTATATTTTTAATAAAAA‑AAAAAAAAAAAAAAAAAAACCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATAc                                                      <  1:9486010/125‑1 (MQ=255)
                                                                             atattcttgtattatttttttattttttTTACTTAAA‑AAAAAAAAAAAAAACAATCCCATT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACca                                                    <  1:5926439/116‑1 (MQ=255)
                                                                                ctagttattattttttttatttttttaTTTTAAA‑AAATAAAAAAAAAAAAATACCC‑TTAAAAA‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACca                                                    <  2:7420557/117‑1 (MQ=255)
                                                                                atatttttaaatttttttatttttttTTATTAAA‑AAAAAAAAAAAAAAAAAAACCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACcac                                                   <  1:4302195/118‑1 (MQ=255)
                                                                                 tcgttaaatATTTTTTTATATTTTTAACATAACAAAAAAAAAAAAAAACAATACCC‑TTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACca                                                    <  1:3103893/120‑1 (MQ=255)
                                                                                  catgttcatattttttatttttttatCTTAAA‑AAATAAAAAAAAAAAAATACCC‑‑‑TAAAA‑AA‑ATAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACattt                                               <  2:9350803/118‑1 (MQ=255)
                                                                                  atttttatttttttttatttttttaTAATAAA‑AAATAAAAAAAAAAAAAACACCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACattt                                               <  1:1374526/119‑1 (MQ=255)
                                                                                   cttatatatttttttattttttTATCTTAAA‑AAAAAAAAAAAAAACAATCCCCTT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACattt                                               <  1:8371899/122‑1 (MQ=255)
                                                                                     tttatatttttttattttttTAACTTAAA‑AAAT‑AAAAAAAAACAAAACCC‑ATAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACatttt                                              <  1:1026212/124‑1 (MQ=255)
                                                                                     tataaatttttttatttttttATATTAAA‑AAATAAAAAAAAAAAAAACCCATT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACatttta                                             <  1:9574356/123‑1 (MQ=255)
                                                                                     tataaatttttttatttttttATATT‑AA‑AAAAAAAAAAAAAAAAAAAACCATAAAAAA‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACattt                                               <  1:1692784/123‑1 (MQ=255)
                                                                                       tatattttatttTTTGTTTTAATAAAA‑AAATAAAAAAAAAA‑AATACACTTTAAAAATAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACatttt                                              <  1:4437509/126‑1 (MQ=255)
                                                                                          atttttttatttttttATTTTAAC‑AAAAAAAAAAAAAAAAAT‑‑ACAATTAAAA‑ATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACattttatttt                                         <  2:6334402/128‑1 (MQ=255)
                                                                                          attttttattttttTTATTATAAA‑AAATAAAAAAAAAAAAAACCCATT‑‑‑AAA‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTAttttt                                        <  1:9013580/128‑1 (MQ=255)
                                                                                           tttttttatttttttttattAAA‑AAAAAAAAAAAAAAAAAAAACC‑CTTAAAA‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACattttatttt                                         <  2:8089018/128‑1 (MQ=255)
                                                                                            ttttttATTTTTTTTTATTAAA‑AAAAAAAAAAAAAACAAACCCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTa                                       <  2:4929549/128‑1 (MQ=255)
                                                                                            ttttttATTTTTTTAAAATAAA‑AAAAAAAAAAAAAAAAAACCCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTaa                                      <  1:2195509/128‑1 (MQ=255)
                                                                                             tttttAATTTTTTAAATTCAA‑AAAAAAAAAAAAAAAAAACCCC‑‑TTAAAA‑AAT‑‑‑‑AAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATa                                  <  1:8198574/128‑1 (MQ=255)
                                                                                                tttttttttTATATTAAA‑AAATAAAAAAAAAAAAAAACCCTTT‑‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATa                                  <  2:1073787/125‑1 (MQ=255)
                                                                                                ttATTTTTTTAAATTAAA‑AAAAAAAAAAAAAAAAAACCCCATAAAAAA‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTaaa                                     <  1:7836105/128‑1 (MQ=255)
                                                                                                  tttttttTATATTCAA‑AAAAAAAAAAAAAAAAAAACCC‑‑‑TATAA‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGa                               <  1:6741130/127‑1 (MQ=255)
                                                                                                  atatttttATATTAAA‑AAAAAAAAAAAAAAAAAAACCC‑CTTAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAg                                <  2:9238336/123‑1 (MQ=255)
                                                                                                       ttttatatataaaaaTAAAAAAAAAAAAATACCGTT‑‑‑AAA‑AATT‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTg                          <  1:743053/116‑1 (MQ=255)
                                                                                                       tttATCTTCAC‑AAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAACAAA‑‑AAAAAAAAA‑‑ATATTAAAAAAAATTCCATA‑TAAAACAAAATTTTATTTTTaaaaataaataataaa                        >  2:7993681/1‑116 (MQ=255)
                                                                                                        tttattataaaaaaTAAAAAAAAAAAAATCAC‑‑ATTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATAtt                           <  1:735382/117‑1 (MQ=255)
                                                                                                        gtttttataaaaaaaaaaaaaaaaaaaATACCCTT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATAtt                           <  2:7710899/117‑1 (MQ=255)
                                                                                                         tATCTTCAC‑AAATAAAAAAAAAACAATCCCCTT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATCTATTTGTTAAAATTCACAT‑ATATACCACATTTAAATTTTAAAAAAATATAttcaa                        >  1:8770494/1‑125 (MQ=255)
                                                                                                           aaaaaaaaaaaTAAAAAAAAAAAAATCACCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTG‑ACa                      <  1:8868806/120‑1 (MQ=255)
                                                                                                             aataaaaaaaaaaaaaaaaaCAATCAC‑‑ATTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTG‑ACa                      <  1:1962441/122‑1 (MQ=255)
                                                                                                               taaaaaaTAAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTG‑ACataata                 <  1:8101395/124‑1 (MQ=255)
                                                                                                                ac‑aAAAAAAAAAAAAACAATAACC‑TTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACAACATTTTATTTTTAAAATAAGATATTG‑ACataa                   <  1:5470962/128‑1 (MQ=255)
                                                                                                                  aaaaaaaaaaaaaaaCAATCCC‑‑ATAAAAA‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTG‑ACataata                 <  1:4146289/127‑1 (MQ=255)
                                                                                                                   aaaaaacaaaaaaacaAACCCC‑‑TTAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAatatat              <  2:8713954/128‑1 (MQ=255)
                                                                                                                     aaaaaaaaaaaaaaATTACATTAAAAAT‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAatat                <  1:3949783/126‑1 (MQ=255)
                                                                                                                     aTAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATATTTATTAAAATAAAATA‑TTATTCCAAATTTATTTTTTAAAAtaaaataata‑aaataaatatta             >  2:8510320/1‑122 (MQ=255)
                                                                                                                      tAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAACAATAATTATTAAAATAAAATA‑ATAAAAAAAATTTTATTTTTAAAATAAGAAATTT‑AAATTatatatata           >  1:8259796/1‑127 (MQ=255)
                                                                                                                             aaaaCAATCCCCTT‑‑‑AAA‑AATTAAAAAAAAAAAAAAAAAAAACAAAAAACAAACACTTTTTATTAAAATACCATA‑TTAAACCCAAATTTATTTTTAAAAAAATAT‑TTT‑ACATAA‑ATATATATAaaatta   >  2:7245003/1‑126 (MQ=255)
                                                                                                                             aaaaCAATCCCC‑TTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAACAAAAAACAAACTAAAATTGTTAAAATGCCCAA‑TTAACCCACAGTTTATTTTTAAAATAATATATTGCACA‑AATATTTATCTatt       >  2:7354853/1‑126 (MQ=255)
                                                                                                                               aaCAATCCCCTT‑‑‑AAA‑AATT‑AAAAAAAAAAAAAAAAAAACAAAAAACATAC‑AAATGTGTTAAAATTACCGATTTAATCCAATTTATATTTTTAAAAAAATAAATTT‑ATATAatataaataaattataat  >  2:9040892/1‑118 (MQ=255)
                                                                                                                                 |                                                                                                                                    
AAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAATAAAAAAAAAACAATCCCCTTTTAAAA‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATA  >  CP016816/202349‑202606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑