Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816437,8820T.35.4% inf / inf 2056intergenic (‑186/+236)JCVSYN2_01985/JCVSYN2_01990glycosyl transferase/ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base T (683/636);  new base . (353/370);  total (1037/1019)
Fisher's exact test for biased strand distribution p-value = 2.12e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.83e-01

Only 100 of 2984 total aligned reads displayed.

GAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATA  >  CP016816/437754‑438009
                                                                                                                                    |                                                                                                                               
gAAACTTATTTTTGTAGTTGTAAGTTTCTTTTTTAATAAATATTAGAAATAAAATTGTATTTTTAAAATAATTATTTTAGGATATGATGCAAAGCAAATACCTCCATATTACCTATAGAGTTAATG‑‑‑‑at                                                                                                                                 >  1:3820570/1‑128 (MQ=255)
 aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑at                                                                                                                                 >  1:418806/1‑128 (MQ=255)
 aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑at                                                                                                                                 >  1:6771389/1‑128 (MQ=255)
 aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCAATATTACCTATAGAGTTAATG‑‑‑‑at                                                                                                                                 >  1:6957041/1‑128 (MQ=255)
   aCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCTTATTCCCTATAGAGTTAATC‑‑‑‑atat                                                                                                                               >  2:3751104/1‑128 (MQ=255)
    cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atata                                                                                                                              >  1:7135843/1‑128 (MQ=255)
       aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATATAGTTAATG‑‑‑‑atatatat                                                                                                                           >  2:6978118/1‑128 (MQ=255)
       aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatat                                                                                                                           >  1:3129948/1‑128 (MQ=255)
        tttttGTAGTTGTATGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAATTGAAGCAAAGCAAAATCCTCCATATTACCTATTGAGTTATTG‑‑‑‑atatatata                                                                                                                          >  2:342477/1‑128 (MQ=255)
        tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGATATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatata                                                                                                                          <  2:4240503/128‑1 (MQ=255)
        tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAAAATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATAATCCCTATAGAGTTAATG‑‑‑‑atatatata                                                                                                                          >  2:2423546/1‑128 (MQ=255)
        tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGAATTTTAAAAATAAAAATTTTAGGAAATGAAGCAAAGCAAAAACCTCAATATTAACTATAGCGGTAATG‑‑‑‑atatatata                                                                                                                          >  2:1653880/1‑128 (MQ=255)
            tacaaaaatAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatata                                                                                                                      >  1:1572031/9‑128 (MQ=255)
             gTAGTTGTAATTTTAATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatat                                                                                                                     <  1:7870133/128‑1 (MQ=255)
              tAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatata                                                                                                                    >  1:2800150/1‑128 (MQ=255)
                gttttatttttAATTTTTAATATATATTATAAATAAAAATTTTTTTTTTAAAATAAATATTTTATTATATTAATATAATAAAAAAACTAAATATTAAATATAGATTTTATT‑‑‑‑atatatatatatatata                                                                                                                  <  2:9494314/120‑1 (MQ=255)
                  tttAATTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAAGCAAAGAAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatata                                                                                                                <  1:1147928/126‑1 (MQ=255)
                  tGTAAGTTTCATTTTTAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATGAAGAAAAGCAAAAACCTCCATATTACCTATAGAGATAATG‑‑‑‑atatatatatatatatata                                                                                                                <  2:4582829/128‑1 (MQ=255)
                   gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatat                                                                                                               >  1:9123652/1‑128 (MQ=255)
                   gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatat                                                                                                               >  1:5999628/1‑128 (MQ=255)
                    tAAGTATCATTTTTAAAAAATATTATAAAAAAAAAAAGTATTTATAAAATAAATATTTTATTAAAACAATCAAACCAAAAACCACCATAATACCTATAGAGATAATG‑‑‑‑atatatatatatatatatata                                                                                                              <  1:4960677/128‑1 (MQ=255)
                     aaGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatgtatatatatatatat                                                                                                             <  1:619669/128‑1 (MQ=255)
                      aGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAATCAAAGCAAAAACCTCCATATTACATATAGAGTTAATG‑‑‑‑atatatatatatatatatatata                                                                                                            <  1:2102288/128‑1 (MQ=255)
                        tttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatc                                                                                                          >  1:2970215/1‑127 (MQ=255)
                         tttaTTTTTATTAAATATTATAAATAATAATTTTATTTTTAAAATAAATATTTTAGTTAATGAAGCAAAGCAAAAACCTCGATATTACATATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatat                                                                                                         <  2:3576793/125‑1 (MQ=255)
                         ttCATTTTTAATAAATATTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGATAATG‑‑‑‑atatatatatatatatatatatatat                                                                                                         <  1:1383698/128‑1 (MQ=255)
                         ttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatat                                                                                                         >  1:9293404/1‑128 (MQ=255)
                           gatatttAATATATATTAGAAATAAAAAATTTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATAAAAAAACTCAATATAACATATAGAGTTAATT‑‑‑‑atatatatatatatatatatatatatat                                                                                                       <  2:2839332/124‑1 (MQ=255)
                           cATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatattc                                                                                                       >  1:3424867/1‑126 (MQ=255)
                            aTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatattca                                                                                                      >  2:7967620/1‑125 (MQ=255)
                            aTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatatata                                                                                                      >  1:9469120/1‑127 (MQ=255)
                             tttttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatgcaagc                                                                                                     <  2:8908621/128‑7 (MQ=255)
                             tttttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatatgcaa                                                                                                     >  2:4435182/1‑124 (MQ=255)
                                tttttatatatTAGATATAAAAATTGTATTTTTATAATAAATATTTTTTGATATGACGGAAAGATCAAACCTCTATATTTACTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAg                                                                                                  <  2:2654257/121‑1 (MQ=255)
                                 taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATACAAGc                                                                                                 >  1:1007221/1‑128 (MQ=255)
                                  aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatata                                                                                                                        >  1:3263399/1‑104 (MQ=255)
                                   ataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatatattctcgcga                                                                                               >  2:146649/1‑120 (MQ=255)
                                    aaaataTTATAAATAAAAATTGTATTTATAAAATATATATTTTAGGAAATGAATCAAAGCAAAAACCACCATATTACCTATAGAGTTAAAG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGAt                                                                                              <  2:8733188/127‑1 (MQ=255)
                                      aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCa                                                                                            >  1:8595236/1‑128 (MQ=255)
                                       atatTATAAATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATGAAGCAAATCAAAAACCTCCAAATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATa                                                                                       <  1:9605756/128‑1 (MQ=255)
                                       atatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAAAGAATCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCa                                                                                         <  1:5130780/128‑1 (MQ=255)
                                        tatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATGAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCa                                                                                            >  1:3655506/1‑128 (MQ=255)
                                        tatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCTATCAGc                                                                                          >  1:1925694/1‑128 (MQ=255)
                                          ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATTCAAGCGATAAGCAt                                                                                        >  1:2651790/1‑128 (MQ=255)
                                           tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATTCTAGAGATCATCATa                                                                                       >  2:850654/1‑128 (MQ=255)
                                           tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCTATAATCATaaa                                                                                     >  2:6829646/1‑128 (MQ=255)
                                             tataTAAAAATTGTTTTTTTAAAATAAATATTTTATGAAATTAATCAAATAAAAAACCTACATATTACCTATAGAGTTAAAG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATaaa                                                                                     <  2:8183952/125‑1 (MQ=255)
                                               tattaaaaTTGTTTTTTTAAAATATATATTTTAGGAAAAGAATCAAAGCAAAAACATCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAAt                                                                                   <  1:1775826/124‑1 (MQ=255)
                                                 tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatat                                                                                                           >  2:663417/1‑102 (MQ=255)
                                                  aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGCTCAGCATAAAATGGTGa                                                                              >  1:7652943/1‑128 (MQ=255)
                                                   aaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATTTAAGCAAGCGATCAGCATAAAATGGTGat                                                                             >  1:4807508/1‑127 (MQ=255)
                                                    aaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATGAT‑‑ATATATATATATATATATATATATATATTCTAGAGATCAGCATAAAATGGt                                                                                >  2:3059144/1‑128 (MQ=255)
                                                        tGTATTTTTAAAATATATATTTTATTAAATGAAGAAAATCAAAAAACTCCATATTACCTATAGAGTTAAT‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTa                                                                        <  1:3553888/128‑1 (MQ=255)
                                                        tGTATTTTTAAAATAAATATTTTAGTAAATGAATAAAATCAAAAACCTCACTATTACCTATAGAGATATTG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTa                                                                        <  1:5288840/128‑1 (MQ=255)
                                                         gTATTATTATAATAAATATTTTAGGAAATGTATCAAATCAAAAACATCCATATTACATATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAg                                                                       <  2:4959284/128‑1 (MQ=255)
                                                             ttttAAAATAAATATTTTTTGAAATGAATCAAAGAAAAAAACTCAATATTAACTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGAt                                                                     <  1:2271008/128‑1 (MQ=255)
                                                              tatAATATAAATATTTTATGAAATTTATAAAAGAAAAAATCTCTATATTACATATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTg                                                                  <  1:8975717/126‑1 (MQ=255)
                                                                tAAAATAAATATTTTAGGAAATGAATCAAAGCAAATACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                              <  2:9134197/128‑1 (MQ=255)
                                                                 aaaaTAAATATTTTAGTATATGAATAAAAGAAAAAACCTACATATAAACTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGt                                                               <  1:4684684/128‑1 (MQ=255)
                                                                  aaataaatATATTAGTAAAAGAACCAAATAAAAAAACTAAATATTAACTATAGAGTTAATT‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                                <  2:9321246/128‑1 (MQ=255)
                                                                  aaaaaaatATTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTTCCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                                <  2:3904477/128‑1 (MQ=255)
                                                                    ataaataTTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                              <  1:7300371/128‑1 (MQ=255)
                                                                          atattAGTAAATTAAGCAAATCTAAAAACTCGATATTATCTATAGAGTTTATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                      <  1:5591735/125‑1 (MQ=255)
                                                                            tttAGGAAATGAATCAAATAAAAAACCTCCATATTAACTATATAGATAATT‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                      <  1:8431747/128‑1 (MQ=255)
                                                                             ttAGGAAATGACTCAAAGCAAAAAACTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTg                                                 <  2:7679791/128‑1 (MQ=255)
                                                                             ttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCTAGCGATCAGAATAAAATTGTTAAATTTAGATCTGAGtacgtgttata                                                     >  2:6126732/1‑118 (MQ=255)
                                                                             ttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAATCTATCAGCATAAAATTTAGAAATTTAGATCTGAGTTTGAATTAAAtt                                                   >  1:4548398/1‑128 (MQ=255)
                                                                              tAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAt                                                    <  1:5894802/128‑1 (MQ=255)
                                                                              tAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGAAAGCGATCAGAATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAt                                                    >  2:5304255/1‑128 (MQ=255)
                                                                                ggAAATGAATCAAAGAAAAAAACTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                                <  1:8840628/128‑1 (MQ=255)
                                                                                  aaaTGAAGCAAAGCAAAAACCTCCATTTTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGAAAGCGATAAGCATAAAATTGTGAAATTTATATCTTATTTAGTCTTAAATTTGTat                                              >  1:5452240/1‑127 (MQ=255)
                                                                                  aaaTGAAGAATAGCTAAAACCTCTATATTATAAATATAGATATTT‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                                <  1:402558/128‑1 (MQ=255)
                                                                                   aaTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTATATCTGAGTTGGTCTTAAATTTGTAGatttt                                         >  1:2490333/1‑128 (MQ=255)
                                                                                    atcaatcaaatcaaaAAACTCTATATTAACTATATAGTTAATT‑‑‑‑TTATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAg                                              <  2:5140382/122‑1 (MQ=255)
                                                                                    aTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGAAAGAGAACAGCATAATATGAAGAAATTTAGATCTGAGTTAGTCTTAAATATGTAGtt                                            >  2:5609581/1‑128 (MQ=255)
                                                                                      taagaaaatcaAAAACATCTATATTACATATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGtttt                                          <  1:8116605/127‑1 (MQ=255)
                                                                                      caagcaaatcaAACACCACCATATAACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                        <  2:6348860/127‑1 (MQ=255)
                                                                                        ataaaagcaaaAACCTCCATATTAACTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                        <  2:5468886/125‑1 (MQ=255)
                                                                                        agcacagcaaAAAACTACATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                        <  2:2057980/128‑1 (MQ=255)
                                                                                         gaaaagaaaaAACATACATATTAAATATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattt                                     <  2:6498121/126‑1 (MQ=255)
                                                                                            aagcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGAGATCAGCATAAAATGGTGAAATTTATATCTGAGTTTGTCTTAAATTTGTAGTTtttatttt                                    >  2:1106107/1‑127 (MQ=255)
                                                                                             agcaaaAACCTCCATATTACCTATAGAGTTAATGAT‑‑ATATATATATATATATATATATATATATGCAAGCTATCAGAATAAAATTGTGAAATTTAGATCTGAGTTTGTCTTAAATTTGTATTTtttat                                       >  1:5740011/1‑128 (MQ=255)
                                                                                                aaaaaacaacATATTAAATATAGAGTTAATGATATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttatt                                      <  2:3279851/119‑1 (MQ=255)
                                                                                                aaaaaCCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGAGATCAGCATAAAATAGATAAATTTATATCAGATTTTATGTTAAATTTATATTTTTTTTTtata                                  >  2:4065238/1‑128 (MQ=255)
                                                                                                aaaaaCCTCCATATTAACTATAGAGTAAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTtata                                  <  2:7496252/128‑1 (MQ=255)
                                                                                                 aaaaCCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTCTTAAATATGTAGTTTTTATTTATAg                                 >  1:6414891/1‑128 (MQ=255)
                                                                                                 aaaaCCTCCATATTACATATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTta                             <  2:7101703/128‑1 (MQ=255)
                                                                                                 aaaaCCTCCATATAACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                           <  2:1858951/128‑1 (MQ=255)
                                                                                                  aaaCCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATATAGATCTGAGTTGGTCTTAAATGTGTAGTTTTTATTTATTGttt                              >  2:7295456/1‑128 (MQ=255)
                                                                                                        ccATATTACCTATAGAGTTAA‑‑‑‑‑‑AGATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGGCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAg                        <  2:8364673/128‑1 (MQ=255)
                                                                                                         cATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                     <  1:6612789/128‑1 (MQ=255)
                                                                                                          atatTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGtt                      >  1:823775/1‑128 (MQ=255)
                                                                                                            atTACCTATAGAGATAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                    <  2:2255029/128‑1 (MQ=255)
                                                                                                              tACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGAAAGCGATAAGAATAAAATGGTTAAATTTAGATCTGAGTTGTTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAATTtaa                    >  1:7448640/1‑128 (MQ=255)
                                                                                                                 cTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAAtt               <  2:1290602/128‑1 (MQ=255)
                                                                                                                     agagATAATT‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa             <  2:5920915/128‑1 (MQ=255)
                                                                                                                      gagTTAATGAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGAATAAAATTGAGAAATTTAGATCTGAGTTGGTCTTATATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAAttt              >  1:8719836/1‑128 (MQ=255)
                                                                                                                        gTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAt          >  2:5770269/1‑128 (MQ=255)
                                                                                                                            tatatatatatatatatatatatatatatatatatGCAAGCGATCAGCATAAAATGGTTAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAt          <  1:4356263/121‑1 (MQ=255)
                                                                                                                             tG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTTAAATTTAGATCTGAGTTGGTCTTAAATTTGTATTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTa     >  2:4745053/1‑128 (MQ=255)
                                                                                                                                    |                                                                                                                               
GAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATA  >  CP016816/437754‑438009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: