BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	203,912	0	G	T	38.9%	1964.0 / inf	1570	intergenic (+296/+162)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand): ref base G (274/670); new base T (597/3); total (897/673)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1669 total aligned reads displayed.

AAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203785‑204039

  aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑TTa                                                                                                                                   >  2:3328650/1‑128 (MQ=255)

         aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GT‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑TTTAAAAT‑aa                                                                                                                           >  1:1022150/1‑128 (MQ=255)

           aatTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTAAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑aaa                                                                                                                          >  2:516126/1‑128 (MQ=255)

            atTTTTAATTTAAATCCATTTGTAAAAAATCC‑TATTTTATAGGATTTTTAATATACTTATAAACATTAAAACGCTTTCAAAGTTTA‑TTTTTTA‑TG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑aaaa                                                                                                                         <  1:8676518/128‑1 (MQ=255)

             ttttttATTTAAATACATTTTTAAAAAATTC‑TTTGTTTTATGTTTTTTTTTTTAATTATTAACATTAAAACTCTTTAAAATTTTA‑TTTTTTT‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGt                                                                                                                       <  1:3288833/128‑1 (MQ=255)

              ttttCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GT‑‑C‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑GTAAAAAA‑AAAAg                                                                                                                        >  1:6818542/1‑128 (MQ=255)

              ttttCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTGCAAAGTGGA‑TTTTTTA‑GT‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑aaaata                                                                                                                       >  1:1789432/1‑126 (MQ=255)

               tttCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTT‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTATTAAAAAT‑aaaattt                                                                                                                      >  1:2344078/1‑125 (MQ=255)

               tttCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTT‑‑‑TAAAAAT‑AAAAGTAAGa                                                                                                                   >  2:8131026/1‑128 (MQ=255)

                ttattttAAAGCCATTTGTAAAAAATTC‑ATTGTTTTTTGTTTTTTATTATAATTATTAAAATTAAAACCATTTCAAATTGTA‑TTTTTTT‑GG‑‑C‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTa                                                                                                                      <  2:5028263/124‑1 (MQ=255)

                   aTTTATAGCAATTTTTAAAAAATCT‑TTTTTTTTATGTTTTTTATTATAATTATTAAAATTACAACCCTTTAAAATTTTA‑TTTTTTATGG‑‑T‑‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGAt                                                                                                                  <  1:8121585/128‑1 (MQ=255)

                    tttAAATCAATTTTTAAATAATCC‑TATTTTTTTGGTTTTTTTTTTTTATTTTAAAAATTAAAACGTTTTTAAATTTTA‑TTTTTTT‑TG‑‑A‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGAtt                                                                                                                 <  1:6346398/128‑1 (MQ=255)

                         ttcaaTTTGTAAAAAATCA‑TTTTTTTTATGTTTTTTTTTTTTATTATTTAAATTACAAAGCTTTAAAATTGTT‑TTTTTTT‑TG‑‑T‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGAt                                                                                                            <  2:2825916/124‑1 (MQ=255)

                         atacATTTTTAAAAAATAC‑TATTTTTTATTTTTTTTATTTTAATTATAAACATTAAAAATCTTTAAAATTTTA‑TTTTTTA‑TG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGAt                                                                                                            <  1:7784767/125‑1 (MQ=255)

                             ctttGTTAAAAACCCTTATGTTCTCGGTTTTTTATTATATTATTAAAAATAAAAACGATTTAAATTGGTA‑TTTTTTT‑GT‑‑T‑‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAAc                                                                                                        <  1:8446873/127‑1 (MQ=255)

                              ttttTAAAAAATCC‑TTATTTTTATTCTTTTTATTATATTTATAAACATTAAAACGCTTTAAAAGTTTT‑TTTTTTA‑GG‑‑G‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAAc                                                                                                        <  1:1197304/128‑1 (MQ=255)

                              tatGTAAAAAATCC‑TATTTTATAGGCTTTTTATTATAATTATCAACATTACAACGCTTTAAAATTGTATTTTTTTT‑GG‑‑T‑‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAAcc                                                                                                       <  1:8938884/126‑1 (MQ=255)

                               ttGTAAAAAAGCC‑TATGTTCTAGGCTGTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑TG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑‑TAAAAAT‑AAAAGTAATATTTGGATCATCCaaa                                                                                                    >  1:6224679/1‑128 (MQ=255)

                                tttAAAAAAATC‑TATTGTTTATGTTTTTTATTTTAATTATAAACATTAAAACTATTTAAAATTTTA‑TTTTTTT‑TG‑‑CTTTTTT‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAAcc                                                                                                       <  1:7530246/126‑1 (MQ=255)

                                 gTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GT‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTATAAAA‑AAATATTAAATTTTGATAAACCaaa                                                                                                    >  2:9517872/1‑128 (MQ=255)

                                 gTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑‑‑‑TTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACAAAAACta                                                                                                >  2:7968470/1‑128 (MQ=255)

                                  tAAAAAATTC‑TATGTTTTATTTTTTTTTTTATAATTTTAAACATTATAACTATTTAAAATTGTA‑TTTTTTT‑GG‑‑C‑‑‑TT‑‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACt                                                                                                 <  1:5849261/128‑1 (MQ=255)

                                  tAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGTTTTT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGGTCAAACaa                                                                                                     >  1:5208633/1‑128 (MQ=255)

                                  tAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATAAACAaaaa                                                                                                   >  1:9054679/1‑128 (MQ=255)

                                   aaaaaaCCC‑TATTTTATATGGTTTTTTTTTTAATTATAAAAATTAAAACTCTTTTAAATTTTA‑TTTTTTA‑TGTTT‑‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCaaaa                                                                                                   <  1:7985166/128‑1 (MQ=255)

                                    aaaaaGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTT‑‑‑TAAAAAT‑AAAATTAATATTTTGTTAAACCAAAACtata                                                                                              >  2:1354923/1‑128 (MQ=255)

                                     aaaaGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAA‑AAAAGTAAAATTTGTATACACAAAAACta                                                                                                >  2:9371063/1‑128 (MQ=255)

                                      aaaGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AATAGTATGATTTGGATCAACCCAAACtata                                                                                              >  1:6018281/1‑128 (MQ=255)

                                         agcctagaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTTAAATT‑AAAAGTTAGTTTTGGATCGACCAAAACTtta‑t                                                                                            >  1:3626820/12‑128 (MQ=255)

                                               gaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAAGTTTGATTTTGTTAAAAAAAAACTTTA‑T‑Aaaaa                                                                                      >  2:1642880/6‑128 (MQ=255)

                                                 ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAATTTAAATTTTATAAAAACAAAACTATT‑T‑Aaaataaa                                                                                   >  1:4747719/1‑128 (MQ=255)

                                                   cTAGGCTTTTTATTATTCTTATCAACATTACAACGCTTTCAAACTGAA‑TTTTTTA‑GG‑‑C‑‑‑ATGA‑‑TT‑ATTTATTATTTAAT‑ATATAAAT‑AAAAATAATATTTTAAATAAAAAAAAAATTA‑T‑CAAAAAAA‑tt                                                                                >  1:5612239/1‑128 (MQ=255)

                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAATTAATATTTGGTACAACCCAAACTTAA‑T‑AAAAAAAA‑TTa                                                                               >  1:4066057/1‑128 (MQ=255)

                                                    tagtatttttATTTTAATTATAAAAATTACAACGTTTTCAAATTTTA‑TTTTTTA‑TG‑‑T‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTa                                                                               <  1:7620005/123‑1 (MQ=255)

                                                         tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAATTAATATTTGGTTAAACCAAAAATATT‑A‑AAAAAAAA‑TTtaaaa                                                                           >  2:8236517/1‑128 (MQ=255)

                                                         tttttATTATAATTATTAACATTTAAACGCTTTAATATGGTT‑TTTTTTATGG‑‑T‑‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTaaaaaa                                                                          <  2:2395280/128‑1 (MQ=255)

                                                           tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAATTAAGATTTTGATAAACAAAAACTATA‑A‑AAAAAAAA‑TTaaaaaaa                                                                         >  2:7501927/1‑128 (MQ=255)

                                                           tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAATTAATATTTGTATAAAAAAAAAATATt‑t‑aaaaaaaa‑ttaaaaaaaa                                                                        >  1:3170328/1‑128 (MQ=255)

                                                           tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAATTAAAATTTTGAT‑AAACAAAAAAATA‑TAAAAAAAAA‑TTaaaaaaaa                                                                        >  1:9342110/1‑128 (MQ=255)

                                                                     ttATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑TTTAAAAA‑AAAATTTTTTTTTTTTAAACCCAAAAAAAAA‑A‑AAAAAAAA‑TTAAAAAAAAtatttattttt                                                             >  1:821761/1‑122 (MQ=255)

                                                                      tATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTTAAAAA‑AAAAATTATATTTTTGTAAAACAAAAAAATT‑TAAAAAAAAA‑TTaaaaaaaaatattttttt                                                              >  1:6602778/1‑118 (MQ=255)

                                                                       aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAAATTTGGATAAAAAAAAAATTTT‑T‑CAAAAAAT‑TTAAAAAAAAtagtttttttta                                                            >  1:3919139/1‑122 (MQ=255)

                                                                       aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGGTTATTTGAGt                                                          >  2:8577834/1‑128 (MQ=255)

                                                                        taaaCATTAAAAATCTTTTAAATTTTT‑TTTTTTT‑GG‑‑G‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGa                                                            <  1:7893536/126‑1 (MQ=255)

                                                                             aTTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑TTTAAAAA‑AAAATTAAAATTTTGATAAACCAAAAAAATT‑T‑AAAAAAAA‑TAAAAAAAAAaatttttttttatttta                                                       >  2:584190/1‑117 (MQ=255)

                                                                               ataaaagttttAAAATTTTA‑TTTTTTA‑TG‑‑T‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCaaa                                                    <  2:886076/120‑1 (MQ=255)

                                                                                   aCGCTTTTAAAGTTTT‑TTTTTTT‑GG‑‑‑‑‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTTGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCa                                              <  2:8715628/128‑1 (MQ=255)

                                                                                     gCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAATAAAAATTTTGAAAAACAAAAAATATT‑A‑AAAAAAAA‑TTAAAAAAAATATTATATTTTTATTTCaaaatgaa                                               >  2:3847842/1‑123 (MQ=255)

                                                                                     gCTTTCAAAGTATA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAATTAATATTTTGATCAACAAAAAATATA‑A‑AAAAAAAA‑TTAAAAAAAATAATTAAGTTTATTTAAAAATcaaca                                              >  1:8366589/1‑124 (MQ=255)

                                                                                      cTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAAACAAAACTATA‑T‑AAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCa                                              >  1:7360083/1‑128 (MQ=255)

                                                                                      cTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑TTTAAAATAAAAAGTAAGAATTTGATCCACCAAAAAATTA‑A‑AAAAAAAA‑TTAAAAAAAATATTTTAGTTTATTTTaaaaaatgaat                                             >  1:5041389/1‑121 (MQ=255)

                                                                                       tttCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑AAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAata                                            >  1:1432353/1‑128 (MQ=255)

                                                                                        ttCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAATTAATATTTGTATCAACAAAAAAAATA‑T‑AAAAAAAA‑TAAAAAAAAAAAATTAATTTTATTTTAAAAtataaaaa                                            >  2:4530524/1‑121 (MQ=255)

                                                                                        ttCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑TTAAAAAA‑AAAATTAATATTTGGATAAACAAAAACTTAA‑T‑AAAAAAAATTTAAAAAAAATA‑TTTATTTGGTTTTCaaaattgaatt                                            >  1:2834816/1‑120 (MQ=255)

                                                                                        ttCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAA‑AAAAATAAAATTTGGTACAACCAAAAAAAAA‑T‑AAAAAAAA‑TTAAAAAAAATAATATAGTTTATTTTAAAATTGGCataa                                           >  2:4299573/1‑127 (MQ=255)

                                                                                         tCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGTT‑TT‑TTTTTTTTTTTTTT‑TTAAAAAA‑AAAATTAATATTTGGATAAAAAAAAAATATA‑A‑AAAAAAAA‑TTAAAAAAAATATTTTATTTTAGTTTAAAATATTCatat                                           >  1:3016145/1‑128 (MQ=255)

                                                                                         tCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAATTAATATTTTGATAAACCAAAAAATAA‑A‑AAAAAAAA‑TTAAAAAAAATATTTTATTTTATTTTaaaaatataattaa                                          >  1:952642/1‑118 (MQ=255)

                                                                                         tCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAA‑AAAAGTAATATTTTGATCAACAAAAACTTTT‑A‑AAAAAAAA‑TTAAAAAAAAAAATTTAGTTTATTTTAAACTATGAataaa                                          >  2:2983966/1‑126 (MQ=255)

                                                                                         tCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAATATTTGGATCAACAAAAACTAAA‑A‑AAAAAAAA‑TTAAAAAAAATTATTTAATTCAATTTAAAATAAGAatata                                          >  1:7269004/1‑128 (MQ=255)

                                                                                          cAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAATTAAGATTTTGATCAACCAAAAAAATA‑A‑AAAAAAAA‑TTTAAAAAAATAGTTTATTTGAATTTAAAATATGCatatat                                         >  2:7637521/1‑128 (MQ=255)

                                                                                            aattttA‑TTTTTTA‑GT‑‑T‑‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGt                                      <  2:7371686/123‑1 (MQ=255)

                                                                                            aatagtttttttttT‑GT‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCAtatata                                        <  2:4121195/120‑1 (MQ=255)

                                                                                              atttttttttttA‑TG‑‑G‑‑‑TTG‑‑‑TTATTTTTTTTTTTTTT‑TTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGt                                      <  2:4781188/122‑1 (MQ=255)

                                                                                               tgtT‑TTTTTTA‑TG‑‑T‑‑‑TTTT‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTTGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAc                                    <  1:7165969/128‑1 (MQ=255)

                                                                                                gtA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAAGTAATATTTGGATCAACCAAAAATATT‑T‑AAAAAAAA‑TTAAAAAAAATATTTTTTTTTATTTTAAAATCTGCATATATATTaaaa                                  >  1:2631452/1‑128 (MQ=255)

                                                                                                gtA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTT‑‑‑TAAAAAT‑AAAAGTAAGATTTTGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTATTTCAGTTTAAAATCTGCATATAAAGTACaaaa                                >  1:5358132/1‑127 (MQ=255)

                                                                                                  a‑TTTTTTA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAAGTAATATTTGGAAAAACCAAAAAAATT‑A‑AAAAAAAA‑TTAAAAAAAATATTTTATTTTAGTTTCAAAAATGCAAATATATTAaaaa                                 >  1:967695/1‑128 (MQ=255)

                                                                                                     tttttA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAT‑AAAATTAAAATTTTGTAAAACCAAAAATATT‑A‑AAAAAAAA‑TTAAAAAAAATATTTTTTTTAATTTTAAAAAATAAATATATATTAAAAAga                               >  1:4384646/1‑127 (MQ=255)

                                                                                                      ttttA‑GG‑‑C‑‑‑TTGT‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAAA‑AAAAGTAAAATTTGTAACAACAAAAAATATA‑T‑AAAAAAAA‑TTAAAAAAAATATTTTAGTTTATTTTAAAAAATACAAATATAGAACAAAGGa                              >  1:8796301/1‑128 (MQ=255)

                                                                                                         tA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑TTAAAAA‑‑AAAAATAAAATTTTGGAAAAACAAAAAAATATT‑AAAAAAAA‑TTAAAAAAAATATTTTATTTGTATTTAAAATATGAATTTATATTAAAAAGAAtttt                          >  2:7116419/1‑128 (MQ=255)

                                                                                                               ttttttttttttt‑tttttttttttttt‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGaa                             <  1:1096714/117‑1 (MQ=255)

                                                                                                                c‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑TTTAAAAA‑AAAATTAATATTTTGATAAAAAAAAAATATA‑T‑AAAAAAAA‑TTAAAAAAAATATTTTATTTTTTTTTCAAATATGCAAATATATTAGAAAGTAtttttgta                      >  2:9252551/1‑124 (MQ=255)

                                                                                                                  tttttttttt‑tttttttttttttt‑GTAAAAAT‑AAAAGTAAGATTTTGATCAACTAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:2453441/120‑1 (MQ=255)

                                                                                                                  tttttttttt‑tttttttttttttt‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:7470163/120‑1 (MQ=255)

                                                                                                                  gttttttttt‑tttttttttttttt‑ttAAAAAT‑AAAAGTAAGATTTGTATAAAAAAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:1612792/120‑1 (MQ=255)

                                                                                                                   ttttttttt‑tttttttttttttt‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACAAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  2:5298162/121‑1 (MQ=255)

                                                                                                                     tttgttt‑tttttttttttttt‑GTTTATAT‑AAAAGTAAGATTTGGATCAAAAAAAACTATA‑T‑GAAAAAAT‑TTAAAATAAATAGTTTAGTTGTGTTTCAATTCTGCATATATAGAACAAAGGAATTTATg                       <  1:4879530/123‑1 (MQ=255)

                                                                                                                      tttttt‑tttttttttttttt‑GTAAAAAT‑AAAAGTAAGATTTGGATAAAACAAAACTATA‑T‑AAAAAAAT‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGa                      <  2:2081541/124‑1 (MQ=255)

                                                                                                                       gtttt‑tttttttttttttt‑ttAAAAAT‑AAAAGTAAGATTTGGATAAACAAAAAATATA‑T‑AAAAAAAA‑TTAAAAAAAATTTTTTATTTTATTTTAAAATATGAATATATATTAAAAAGAAATTtattat                     >  1:4558469/4‑128 (MQ=255)

                                                                                                                          tt‑tttttttttttttt‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAAATATT‑T‑AAAAAAAA‑TTAAAAAAAATAGTTTTTTTGAGTTTCAAATCTGCATATATTGTTAAAAGATATTTTTGATata                  >  1:2171255/1‑126 (MQ=255)

                                                                                                                           t‑tttttttttttttt‑GTAATATT‑AAAAGTATGATTTGTATAAAATAAATCTATA‑T‑TAAAATAA‑TTAAAAAATATAGTTTAGTTGAGTTTTAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  2:115602/128‑1 (MQ=255)

                                                                                                                             tttttttttttttt‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                <  2:1067339/128‑1 (MQ=255)

                                                                                                                              ttttttttttttt‑tTAAATTT‑TAAAGTAATATTTTTATTAATTAATATTATA‑T‑TAAAAAAA‑TTAAAAAATATAGTTTTGTTGAGTTTCAAATCTTCATATATATTACAAAGGAATTTATGATAGaaaa               <  2:5676935/128‑1 (MQ=255)

                                                                                                                               tttttttttttt‑GTAATATT‑AAAATTAAGATTTGGATAAACCAAAAATATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTTGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  2:3515975/128‑1 (MQ=255)

                                                                                                                               tttttttttttt‑GTAAAATT‑AATAGTAAGTTTTGGATTAACTAAAACTATA‑T‑CAAATATA‑TTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  2:6445832/128‑1 (MQ=255)

                                                                                                                               tttttttttttt‑GTAAAAAT‑AAAAGTTAGATTTGGATTAATTAAAATTATA‑T‑AAAAAAAT‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  2:257959/128‑1 (MQ=255)

                                                                                                                               tttttttttttt‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  2:7774002/128‑1 (MQ=255)

                                                                                                                                 tttttttttt‑ttAAAAAT‑TAAATTTATTTTTTGTTTAAAAATAAATATA‑T‑TAAAAAAA‑TTAAAAAAAATATTTTATTTTATTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa            <  1:8573653/128‑1 (MQ=255)

                                                                                                                                 tttttttttt‑GTAAAAAT‑AAAAGTAAGTTTTGTATAAACAAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGATTTTATGATAGaaaaaaa            <  1:4206642/128‑1 (MQ=255)

                                                                                                                                   tttttttt‑GTAAAAAT‑AAAAGTAAGATTTGGATCAAAAAAAAATATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg          <  1:3476244/128‑1 (MQ=255)

                                                                                                                                    ttttttt‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg         <  2:2221115/128‑1 (MQ=255)

                                                                                                                                      ttttt‑GTAAAATT‑TAAATTTATATTTGGATAAAACAAAATTATA‑T‑TAAATAAA‑TTAAAAAAAATAGTTTAGTTTAGTTTCATATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt       <  2:6150219/128‑1 (MQ=255)

                                                                                                                                        ttt‑tTAAAAAT‑AAAAGTAATATTTTGATCAACCAAAAATTTT‑T‑AAAAAAAA‑TTAAAAAAAATATTTTATTTGATTTTAAAAAATAAATATAAATTAAAAAATAATTTATTATTAAAAAAAAATGATTa     >  1:1985313/1‑128 (MQ=255)

                                                                                                                                        ttt‑tTAAAAAT‑AAAAGTAAGATTTGGATCCCCCAAAACTTTT‑T‑AAAAAAAA‑TTAAAAAAAAATTTTTTTTTGATTTTAAAATGTGCATATTTAGTAAAATTTAATTTTTGATATAAAAAAATgttttt     >  1:6983519/1‑123 (MQ=255)

                                                                                                                                        ttt‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  2:7857059/128‑1 (MQ=255)

                                                                                                                                         tt‑GTATAAAT‑AAAAGTAATTTTTGTTTAATACAAAAATATA‑T‑AAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  1:9216732/128‑1 (MQ=255)

                                                                                                                                         tt‑GTAAAAAT‑AATATTAATATTTTGATAAATAAATACTATA‑T‑CAAAAAAA‑TTAAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAAAGAAAAAAATGGATTAg    <  2:6873154/128‑1 (MQ=255)

                                                                                                                                         tt‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:9066317/128‑1 (MQ=255)

                                                                                                                                         tt‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:7260989/128‑1 (MQ=255)

                                                                                                                                            gTAAAAAT‑AAAATTAAGATTTGGATCAAACAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAATGAATTTATGATAGAAAAAAATGGATTAGtt  <  2:8376893/128‑1 (MQ=255)

AAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑GTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203785‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`