Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4850T.65.0% 434.0 / inf 855intergenic (+263/‑412)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (66/200);  new base . (237/258);  total (341/514)
Fisher's exact test for biased strand distribution p-value = 4.08e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.91e-06

Only 100 of 938 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATA  >  CP016816/202358‑202608
                                                                                                                                |                                                                                                                             
 atttAGTTTAAATTATATATTTAAGTTTAATTTAAATAACATTAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                              <  1:6285330/126‑1 (MQ=255)
 aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAACCCCtt                                                                                                                              >  2:4848958/1‑128 (MQ=255)
  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                              >  1:5996442/1‑127 (MQ=255)
  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACCtta                                                                                                                             >  1:8350223/1‑127 (MQ=255)
  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACAATCCCCttaa                                                                                                                            >  2:8013979/1‑126 (MQ=255)
   ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACCttaa                                                                                                                            >  2:931319/1‑126 (MQ=255)
    tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTATATCTTCACAAATAAAAAAAAAAAAATCACCttaaa                                                                                                                           >  1:9023695/1‑125 (MQ=255)
         tAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACttaaaaatta                                                                                                                      >  2:9576780/1‑120 (MQ=255)
            ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAAAAAACCCC‑‑‑taaaaaataaaaa                                                                                                              >  2:9165797/1‑128 (MQ=255)
            aatatacatttAAGTTTAATTAAAAAACCAAAAAATTAATAATTCTTATAATTTATATCCTCGTTATTTATTTTTTTATTTGTTTAAAATAACAAAAAAAAAAAAAACAATCCCC‑‑Ttaaaaattaaaa                                                                                                               <  1:7779155/119‑1 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaa                                                                                                           >  2:8600476/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTATCTTCACAAATAAAAAAAAAACAATAAC‑‑‑ATAAAAAATaaaaaaaaa                                                                                                          >  2:4197613/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACATACCCC‑‑TTAAAATTTaaaaaaaa                                                                                                           >  2:9411744/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTCACAAATAAAAAAAAAACAAT‑‑ACAATTAAAAATTaaaaaaaa                                                                                                           >  2:3476763/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCAAAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑ATAAAAAATaaaaaaaa                                                                                                           >  2:7600894/1‑128 (MQ=255)
                  tagTTAATGGTAAATAAAAAAAAAAAAACTAAATAATTCTTATAATTTATATCCTCGTTAAATATTTTTTTTATTGTTTATCTTCAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaa                                                                                                         <  1:8527671/127‑1 (MQ=255)
                  gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑‑TAAAAAATtaaaaaaaaaa                                                                                                        >  2:2240090/1‑128 (MQ=255)
                    gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATCTAAAAAAATAAAAAAAAAAAAAACCCAAT‑‑‑AAAAATaaaaaaaaaaaaa                                                                                                      >  2:7731394/1‑128 (MQ=255)
                      taattttaattaaAATAAAATAAAATTAATAATATTTAAAATTTTTATCATAGTTATATATTTTTTTATTTTTTTAACTTAACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                                     <  1:5755040/123‑1 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAA‑‑AACAATTAAAAATTaaaaaaaaaaaaaa                                                                                                     >  2:3217636/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAATCCCC‑‑‑TAAAAAATtaaaaaaaaaaaaaaa                                                                                                   >  1:7366834/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAAATTATTATTTTATAATAATCACAAAAAAAAAAAAACAATACACaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:3935940/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAATaaaaaaaaaaaaaaaa                                                                                                   >  2:2425109/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAATaaaaaaaaaaaaaaaa                                                                                                   >  2:2998960/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                    >  2:7945990/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                    >  1:7711372/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTGAATAATTCTTATAATGTAGAACCTCGTGATCTATTTATTTATTTGTTTTTCTTCACAAATAAAAAATAAACAATACAC‑‑TTAAAAATTaaaaaaaaaaaaaca                                                                                                    >  2:7472050/1‑126 (MQ=255)
                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTATATCTTAACAAATAAAAAAAAAAAAAACCACTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  2:575251/1‑128 (MQ=255)
                         ttttaattaaAAAACCATAAACTTAAAAAATATTATAATTTAAAAAAATGTTATATATTTTTTTATTTTTTTATAATAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                  <  1:801100/126‑1 (MQ=255)
                         tgTTAAATAAAATAAAAAAAAATTAATAATTATTAAAATTTATAAAATCTTTATATATTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAAATaaaaaaaaaaaaaaaaa                                                                                                  <  1:8263163/127‑1 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTAATTATATTATCTTCACAAATAAAAAAAAAAACAAAAACCAaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  2:6739150/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                  >  1:8109831/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAT‑‑CAAATTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                  >  1:8892712/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTTATTTATTTGTTTAACTTAAAAAATAAAAAAAAAACAAAAACAAT‑‑‑AAAAATaaaaaaaaaaaaaaaaaa                                                                                                 >  2:627365/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAAATCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTATATCTTCACAAATAAAAAAAAAAAAATAACC‑‑‑TAAAAAATtaaaaaaaaaaaaaaaaa                                                                                                 >  2:3339862/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAACAATAAC‑‑‑ATAAAAAATtaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:4891726/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:7310333/1‑128 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:5307997/1‑128 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:2387431/1‑128 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCAATaaaaaaaaaaaaaaaaaaaaaaaaaaca                                                                                                >  2:4987404/1‑126 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaat                                                                                              >  2:5084876/1‑127 (MQ=255)
                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAAAAAAAAAAAACAAT‑‑CAAAAAAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  2:1957498/1‑127 (MQ=255)
                              ataaaaaTAACATAAAATTAATAATTCTTATAATGTAGATCATCGTTTTATATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaactaaa                                                                                             <  1:2997934/125‑6 (MQ=255)
                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAAAAACAATAAAAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:1448032/1‑128 (MQ=255)
                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAAAAAACCCC‑‑‑TAAAAAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:4418452/1‑125 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCAC‑‑‑AAAAAAAATTAAAAAAAAAAAAAAAAAAAATaaaaa                                                                                       >  2:466573/1‑128 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaataa                                                                                         >  2:8947527/1‑123 (MQ=255)
                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:2576141/1‑128 (MQ=255)
                                    aTAACATAAATTTAAAAATTTTTAAATTGTATAAAATCGTTTTTTATTTTTTTATTTTTTTTTATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑‑TAAAAAATAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                     <  1:3255898/128‑1 (MQ=255)
                                    aTAACATAAAATTTAAAATTCTTTAAATTTATAACCTCTTGATCTTTTTTTTTATTTTTTTTATTTAAAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                     <  1:9177285/128‑1 (MQ=255)
                                     taacATATAATTATTAATTTTTATAATTTATATTCTCGTTTTTTTTTTTTTTATTTTTTTATCTTAACAAAAAAAAAAAAAAAAAACCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                     <  2:8659485/125‑1 (MQ=255)
                                        aaTAAAATTAAAAATTTTTATAATTTATAAACTACAGATATAATTTTTTATTTTTTTAACATAAAAAAAAAAAAAAAAAAAAACCCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                    <  1:4288531/127‑1 (MQ=255)
                                         aTAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAGAAAAACTAAAAACAAAct                                                                                 <  1:7274326/128‑1 (MQ=255)
                                            aaattAAAAATTATTAAAATTTAAAACCTATTTATATAATTTTTTATTTTTTTAAAATAAAAAATAAAAAAAAAACAAAACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  1:6471047/125‑1 (MQ=255)
                                                ttataatTCTTATAATTTTTAACATATTTATATATTTTTTTATTTTTTTAACTTAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                           <  1:4714947/126‑1 (MQ=255)
                                                taataaTTATTAAAATTTATATACTAGTTTAATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCCATAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  1:8813664/128‑1 (MQ=255)
                                                   taatTATTATAAATTATATAATAGTGATATATTTTTTTTTTTTTTTATATTCAAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                       <  1:3373525/128‑1 (MQ=255)
                                                    tattattATAATTTATATCCAAGTTATATATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAACAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                        <  1:4514456/127‑1 (MQ=255)
                                                                  tataacaccttaTCTATTTATTTATTTTTTTAAATTCACAAAAAAAAAAAAAAAAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                          <  1:5256252/117‑1 (MQ=255)
                                                                  atatccaacttttCTATTTTTTTATTTTTTTTTATTAAAAAAAAAAAAAAAAAAAAAACC‑‑ATTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                         <  1:1194953/116‑1 (MQ=255)
                                                                    aacaacttGATCAATTTTTTTATATTTTAATAATAACAAAAAAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                   <  1:5098023/121‑1 (MQ=255)
                                                                     tacaatttttatATTTTTTTATTTGTTTTTTTTAAAAAATAAAAAAAAAAAAATACCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                     <  1:7468811/117‑1 (MQ=255)
                                                                     taatattgaaatatttttttattttttTATATTTACAAAAAAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                     <  1:9536472/117‑1 (MQ=255)
                                                                      tctagtttttttttttttttttttttTATTTTCAAAAATAAAAAAAAAAAAATTACCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                    <  2:8321074/116‑1 (MQ=255)
                                                                      aactttatatattttttttATTTATTATATTAAAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                                  <  1:6997000/116‑1 (MQ=255)
                                                                       caatttatataattttttttttttttATATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                   <  1:5482809/116‑1 (MQ=255)
                                                                       atcttttataatttttttatttttttAAAATAAAAAAAAAAAAAAAAAAAAAACCCATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                       <  1:2577267/118‑1 (MQ=255)
                                                                        tatttatatatttttttattttttTATATTAAAAAAAAAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                   <  1:7863337/120‑1 (MQ=255)
                                                                         atttttatttttttttatttttttaTAATAAAAAATAAAAAAAAAAAAAACACCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                <  1:1374526/119‑1 (MQ=255)
                                                                           ttttatatttttttattttttTTATTTTAAAAATAAAAAAAAAAAAATACCCTTT‑‑‑AAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                              <  2:949014/123‑1 (MQ=255)
                                                                            tttttatttttttattttttTTTATTAAAAAAAAAAAAAAAAAAAATACCCTTAAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                 <  1:8677592/124‑1 (MQ=255)
                                                                            tttatatttttttattttttTAACTTAAAAAATAAAAAAAAACAAAACCCATAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                               <  1:1026212/124‑1 (MQ=255)
                                                                            tataaatttttttatttttttATATTAAAAAAAAAAAAAAAAAAAAAACCATAAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                <  1:1692784/123‑1 (MQ=255)
                                                                              aatatttttttattttttTATCTTAACAAAAAAAAAAAAAAAAATCCCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                           <  1:977642/126‑1 (MQ=255)
                                                                                tATTTTTTTTTTTTTTTTAATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                           <  1:8596661/128‑1 (MQ=255)
                                                                                  ttttttttttttttTAGATTAAAAAAAAAAAAAAAAAAAAAACCTTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                          <  2:8823063/128‑1 (MQ=255)
                                                                                  tttttttatttttttttattAAAAAAAAAAAAAAAAAAAAAAACCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                          <  2:8089018/128‑1 (MQ=255)
                                                                                  tttttttATTTGTTTAATATAAAAAAAAAAAAAAAAAAAATAACATTT‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                        <  1:8739563/128‑1 (MQ=255)
                                                                                   ttttttatttttttatAATTAAAAAAAAAAAAAAAAAAAACACCTTT‑‑AAAATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                        <  2:8482398/128‑1 (MQ=255)
                                                                                    tttttAATTTTTTAAATTCAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑‑‑‑AAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  1:8198574/128‑1 (MQ=255)
                                                                                      ttttttttttttTATTAAAAAATAAAAAAAAAAAAATTCCATTT‑‑AAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  2:8216592/128‑1 (MQ=255)
                                                                                       ttATTTTTTTATATTAACAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTGAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  1:7235383/128‑1 (MQ=255)
                                                                                        ttttttttTATCTTAAAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                 <  1:3692427/126‑1 (MQ=255)
                                                                                        tATTTGTTTATATTAACAAATAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  1:2799726/128‑1 (MQ=255)
                                                                                         tttttttTATATTCAAAAAAAAAAAAAAAAAAAAACCC‑‑‑TATAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                <  1:6741130/127‑1 (MQ=255)
                                                                                          ttttttTATTTTAAAAAAAAAAAAAAAAAAAATCTACTT‑‑‑AAAAATT‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                              <  1:2455383/128‑1 (MQ=255)
                                                                                          ttttttTATATTAAAAAAAAAAAAAAAAAAAAAACACTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                <  1:4410994/128‑1 (MQ=255)
                                                                                           ttttttATCTTCAAAAATAAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                              <  1:7321251/125‑1 (MQ=255)
                                                                                             ttttATATTCAAAAAAAAAAAAAAAAAAAAAACCTT‑‑‑AAAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                            <  1:9459323/127‑1 (MQ=255)
                                                                                             gtttataataaaaaaaaaaaaaaaaaaaaaCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                              <  2:7228146/116‑1 (MQ=255)
                                                                                                tatattaaaaaaaaaaaaaaaaaaaATCCC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                           <  1:3137819/119‑1 (MQ=255)
                                                                                                   tttaaaaaaTAAAAAAAAAAAAATAACATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                       <  2:1199557/122‑1 (MQ=255)
                                                                                                    ttaaaaaaaaaaaaaaaaaaaaaACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                       <  1:7612031/123‑1 (MQ=255)
                                                                                                    ttCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAATCTATTTATAAAAATAACATTATAAAACAAAATTTATTTTTAAAAAAAGatttagaata                       >  1:8447852/1‑120 (MQ=255)
                                                                                                     aaaaaaaTAAAAAAAAAAAATCCCCTT‑‑‑AAAAATT‑‑‑AAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                 <  2:7377978/124‑1 (MQ=255)
                                                                                                      aaaaaaTAAAAAAAAAAAAAAACACATTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAATCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                      <  1:1833312/125‑1 (MQ=255)
                                                                                                        aaaaaaaaaaaaaaaCAATCCC‑‑ATAAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                   <  1:4146289/127‑1 (MQ=255)
                                                                                                           aaaaaaaaaaaaaCAATCCCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata               <  1:9304457/125‑1 (MQ=255)
                                                                                                            aaaaaaaaaaaaaaATTACATTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatat                  <  1:3949783/126‑1 (MQ=255)
                                                                                                                aaaaaaaaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAGTATTTATTAAAATACAATATATAACAAAATTTAAATTTTAAAAAAACAAATTTAAATaatataaatata           >  1:2093475/1‑128 (MQ=255)
                                                                                                                                |                                                                                                                             
AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATA  >  CP016816/202358‑202608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: