mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 77 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 202,485 | 0 | T | . | 72.8% | 394.4 / inf | 386 | intergenic (+263/‑412) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 165,250 | 0 | T | . | 66.7% | 1601.6 / inf | 1420 | intergenic (+214/‑328) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 437,881 | 0 | A | . | 64.0% | 830.7 / inf | 952 | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 437,882 | 0 | T | . | 61.2% | 565.4 / inf | 952 | intergenic (‑186/+236) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 87,902 | 1 | . | T | 60.8% | inf / inf | 1348 | intergenic (+29/‑831) | JCVSYN2_00345/JCVSYN2_00350 | hypothetical protein/50S ribosomal protein L31 |
| * | CP016816 | 203,895 | 1 | . | T | 57.4% | inf / inf | 679 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,494 | 0 | A | T | 56.3% | 9.1 / 310.8 | 382 | intergenic (+272/‑403) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,486 | 0 | T | . | 55.5% | 228.2 / inf | 384 | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 105,339 | 0 | T | G | 49.3% | 649.1 / inf | 978 | intergenic (+834/+92) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 202,477 | 0 | C | A | 47.7% | 300.3 / 255.5 | 510 | intergenic (+255/‑420) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 165,251 | 0 | T | . | 47.6% | inf / inf | 1420 | intergenic (+215/‑327) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 420,253 | 0 | C | A | 42.8% | 1190.1 / inf | 1594 | intergenic (‑536/+307) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 105,361 | 1 | . | A | 39.8% | 445.4 / inf | 910 | intergenic (+856/+70) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 203,912 | 0 | G | T | 39.2% | 944.2 / 267.0 | 839 | intergenic (+296/+162) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,481 | 0 | C | A | 38.5% | 332.5 / 92.3 | 412 | intergenic (+259/‑416) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,937 | 0 | C | A | 34.3% | 1480.1 / 155.0 | 1018 | intergenic (+321/+137) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,480 | 0 | T | A | 33.8% | 315.6 / 172.9 | 465 | intergenic (+258/‑417) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,952 | 0 | C | A | 33.6% | 1689.5 / 215.4 | 1091 | intergenic (+336/+122) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,460 | 0 | C | A | 32.9% | 961.3 / 106.8 | 697 | intergenic (+238/‑437) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 420,278 | 0 | C | A | 32.4% | 2204.5 / 229.3 | 1505 | intergenic (‑561/+282) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| Marginal new junction evidence (lowest skew 10 of 179 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | 165253 = | 1275 (0.600) | 616 (0.330) | 140/220 | 11.6 | 37.1% | intergenic (+217/‑325) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | = 165249 | 980 (0.530) | intergenic (+213/‑329) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | 437885 = | 1143 (0.540) | 366 (0.210) | 120/204 | 13.4 | 30.1% | intergenic (‑189/+233) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437880 | 776 (0.450) | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | = 311148 | 616 (0.370) | 404 (0.200) +TATA |
94/192 | 17.5 | 33.4% | intergenic (‑71/‑243) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | 311149 = | 888 (0.420) | intergenic (‑72/‑242) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||
| * | ? | CP016816 | = 105361 | 638 (0.350) | 351 (0.170) +AAA |
94/210 | 19.7 | 32.1% | intergenic (+856/+70) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| ? | CP016816 | 105362 = | 779 (0.370) | intergenic (+857/+69) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase | |||||
| * | ? | CP016816 | = 87902 | 1109 (0.590) | 402 (0.190) +TTT |
94/216 | 20.4 | 24.5% | intergenic (+29/‑831) | JCVSYN2_00345/JCVSYN2_00350 | hypothetical protein/50S ribosomal protein L31 |
| ? | CP016816 | 87903 = | 1275 (0.600) | intergenic (+30/‑830) | JCVSYN2_00345/JCVSYN2_00350 | hypothetical protein/50S ribosomal protein L31 | |||||
| * | ? | CP016816 | = 203895 | 481 (0.260) | 273 (0.130) +TTT |
76/214 | 24.6 | 33.7% | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| ? | CP016816 | 203896 = | 547 (0.260) | intergenic (+280/+178) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase | |||||
| * | ? | CP016816 | 437887 = | 1233 (0.580) | 288 (0.160) | 71/208 | 25.2 | 23.3% | intergenic (‑191/+231) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437880 | 881 (0.500) | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 117946 = | 2492 (1.170) | 100 (0.060) | 72/212 | 25.4 | 4.6% | intergenic (+67/+792) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease |
| ? | CP016816 | = 117942 | 2055 (1.150) | intergenic (+63/+796) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease | |||||
| * | ? | CP016816 | = 165267 | 1324 (0.620) | 584 (0.280) | 87/250 | 25.6 | 30.9% | intergenic (+231/‑311) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | 165271 = | 1305 (0.620) | intergenic (+235/‑307) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | = 202486 | 160 (0.080) | 311 (0.150) | 82/252 | 27.0 | 64.3% | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| ? | CP016816 | 202490 = | 186 (0.090) | intergenic (+268/‑407) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein | |||||