Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681687,9021.T60.8% inf / inf 1348intergenic (+29/‑831)JCVSYN2_00345/JCVSYN2_00350hypothetical protein/50S ribosomal protein L31
Reads supporting (aligned to +/- strand):  ref base . (270/257);  new base T (431/385);  total (703/645)
Fisher's exact test for biased strand distribution p-value = 5.76e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1682 total aligned reads displayed.

TTGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTATTTT  >  CP016816/87775‑88028
                                                                                                                                 |                                                                                                                                
  gtgtAACAAAAGTGTTTATTGATTTTCAAGTAAATTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATTAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑tt                                                                                                                               <  1:2313080/128‑1 (MQ=255)
   tttAAAAAAATTGGTTTTTGTTTTGCAATTAAATTTAAAATTTATAATAAAATTTATATTTATGGAAAGTCAAATTAATATTTAGATTTTTAATATCTTATTTAAATGGATTATTAAACAATCC‑A‑‑ttt                                                                                                                              <  1:3690304/126‑1 (MQ=255)
    gtAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATTAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAAACC‑A‑‑tttt                                                                                                                             >  2:1201587/1‑128 (MQ=255)
     tAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑ttttt                                                                                                                            >  1:1493937/1‑128 (MQ=255)
       aCAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑tttttat                                                                                                                          >  2:4494853/1‑126 (MQ=255)
       aCAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCA‑A‑‑ttttttt                                                                                                                          >  2:756005/1‑128 (MQ=255)
        cAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTATACAATCC‑A‑‑tttttttt                                                                                                                         >  1:634768/1‑128 (MQ=255)
        cAAAAGTGGGTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTAAGATTTTGAATAGCTGATTTATATGGATTATTAAACAATCC‑A‑‑tttttttt                                                                                                                         >  1:1064556/1‑128 (MQ=255)
         aaaaTTGGTTATTTAGTTGCAATTAAAGTTTAAATTTATAATAAAATTGATATTCATTGAAATTCAAATTAATATTTATATTTTTAATAGCTTATTTAAATGGTTTATTAAAAAATCC‑A‑‑ttttttttt                                                                                                                        <  1:2848983/128‑1 (MQ=255)
         aaaaGTGGTTATTGAGTTGCAAGTTAATTTAAAATTGATAATAAAATTTTTATTTATGGAAATTCAAATGAATATTTAGATTTTGAATATCTGATTTAAATGGATTATTAAAAAATCA‑A‑‑ttttttttt                                                                                                                        <  1:4214714/128‑1 (MQ=255)
         aaaaGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑ttttttttt                                                                                                                        >  1:3767704/1‑128 (MQ=255)
          aaaGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑tttttttttt                                                                                                                       >  1:4033624/1‑128 (MQ=255)
            aGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCG‑A‑‑tttttttttttt                                                                                                                     >  2:1325812/1‑128 (MQ=255)
             gTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTATATTTTGAATAGCTGATTTAAATGGATTAATAAACAATCC‑A‑‑ttttttttttttt                                                                                                                    >  2:1450415/1‑128 (MQ=255)
             gTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑ttttttttttttt                                                                                                                    >  1:738258/1‑128 (MQ=255)
               gggttttGTGTTGCAACTTAATTTCAAATTTATAATTAAATTGATATTCATGGATAGGCAAATTTATATTTATTTTTTTTATATGTTATTTAAATTTTTTATTTAACTATAC‑A‑‑ttttttttttttttt                                                                                                                  <  1:2396405/123‑1 (MQ=255)
               ggTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATTGAAAGTCAAATTAATATTTAGATTTTGAATAGATTATTTAAATGTATAATTAAACAATCC‑A‑‑tttttttttatttat                                                                                                                  >  2:3458592/1‑126 (MQ=255)
                gTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑ttttttttttttttaa                                                                                                                 >  2:3357810/1‑126 (MQ=255)
                 ttATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTt‑aa                                                                                                               >  2:3675348/1‑128 (MQ=255)
                 ttATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTt‑aa                                                                                                               >  1:125664/1‑128 (MQ=255)
                 ttATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAAAATAC‑A‑‑TTTTTTTTTTTTTTt‑at                                                                                                               >  1:1436846/1‑127 (MQ=255)
                    ttGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑tttttttttttttaataaaa                                                                                                             >  2:4402056/1‑121 (MQ=255)
                     tcaGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGATTATTTAGATTTTGAATAAATGATTTAAATGGAATATTAAACAATCC‑A‑‑TTATTAATTTAATTT‑aaaaaa                                                                                                           >  1:3078768/3‑128 (MQ=255)
                     tGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTt‑aataa                                                                                                            >  1:2045752/1‑128 (MQ=255)
                     tGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTt‑aataa                                                                                                            >  2:177563/1‑128 (MQ=255)
                       aGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑tttttttttttttttttattaaa                                                                                                          >  2:4564527/1‑120 (MQ=255)
                           gCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AAAAAAAAGAc                                                                                                      >  2:673180/1‑128 (MQ=255)
                              attAAATTTAAAATTTTTAATAAAATTTTTATTAATGTAAAGTCAAAATTATATTTAGATTTTTTATATCTTATTTAAATGGATTATTAAACAATAC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTca                                                                                                   <  1:1839746/126‑1 (MQ=255)
                               ttAAAGTTCAAATTGATAATAAAATTGAAATTCATGGAAATTAAAAAGAATATTTATATTTTGAATATCTGATTTAAATGGTTTAATAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTcac                                                                                                  <  2:4287559/127‑1 (MQ=255)
                               ttAAAGTTAAAATTTAAAAAAAAATTCTAATTCATGCAAAGTAAAATTAATATTTTTTTTTTTAATACCTTATATAAATGATTTATTAACAAAACC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTcact                                                                                                 <  1:1729190/127‑2 (MQ=255)
                                 aaaGTTCAAATTGAAAATAAAATTGAAATTCATGGAAACTCAAAAGAATATTTAGATTTTGAATAGCTTATTTAAATTGATTAATAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTcactt                                                                                                <  1:3887035/128‑3 (MQ=255)
                                  aatttaaaaTTTTTAATAAAATTTAAATTAATTGTAACTCAAATTAATATTTATATTTTGAATATCTGATTTAAATGGTTTATTTAAAAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATaa                                                                                              <  2:4221030/122‑1 (MQ=255)
                                  aatttCAAATTTATAATAAAATTGTTATTAATGTTAATTAAAATTAATATTTAGATTTTGAATAGCTTATTTAAATGGATTATTAAAAAATCC‑A‑‑‑TTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAg                                                                                             <  1:3357810/125‑1 (MQ=255)
                                   aGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AAAAAAAAGACTcacaatag                                                                                             >  1:1642984/1‑124 (MQ=255)
                                   aGTTAAAATTTATAAAAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAACCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACTTat                                                                                              <  1:511159/128‑2 (MQ=255)
                                    ggtcaacatGATAAAAAAATTGATAATCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAAAGGATTATTAAACAAACC‑A‑‑‑TTTTTTTTTTTTTT‑AATAAAAAGACTCACTTAtgtg                                                                                           <  2:1841586/120‑1 (MQ=255)
                                    gTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATaaaaaaaataaaataaa                                                                                             >  2:1264871/1‑116 (MQ=255)
                                       cAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTA‑AAAAAAAATACTCAAATAAGTTAg                                                                                         >  2:2439315/1‑128 (MQ=255)
                                       cAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑‑TTTTTTTTTTTTTT‑AATAAAAATAATCAAATaatttata                                                                                        >  2:2094637/1‑122 (MQ=255)
                                        aaaTTTATAATAAAATTTATATTCATGGAAAGTCAAATTAATATTTATATTTTTAATAGCTGATTTAAATGGATTATTAAAAAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGt                                                                                        <  2:3539009/128‑1 (MQ=255)
                                          atttttaataaAATTGTTTTTAATTGAAATTTAAAATTATATTTTTTATTTTAATACTTGATTTTAATTTATTATTAAAAAATCC‑A‑‑‑ATTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCaa                                                                                     <  2:2856084/123‑1 (MQ=255)
                                          aTTGTTAATAAAATTTAATTTCTTGGAAAGTAAAATGTATTTTTTGTTTTTGAATAGCTGATTTTAATTGATTATTAAACAATAC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTc                                                                                       <  1:2594826/128‑1 (MQ=255)
                                          aTTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTATATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCA‑A‑‑TTTTATTTTTTTTTT‑AATAAAAATACTAACATaatttataaa                                                                                      >  2:4137964/1‑120 (MQ=255)
                                          aTTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGAGTTTGAATAGCTGATTTAAATGGATTATTAAACGATCC‑A‑‑TTTTTTATTATTTTT‑AATAAAACTCCTCACAGAAGTTAGACa                                                                                      >  1:2469772/1‑128 (MQ=255)
                                           attataaaaAAATTTATATTCATTGAAATTCAAATTAATATTTAGATTTTGATTATCAGTATTAAATGGATTATTAAACAAACCAA‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCa                                                                                      <  1:4373429/125‑1 (MQ=255)
                                             gATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAAAGTATTATTAAACAATCC‑A‑‑‑TTTTTTTTTTTTTT‑AAAAAAAAGAATCAAATaatatctaaaatga                                                                                  >  1:1974548/1‑116 (MQ=255)
                                              ataataAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAAACTCAAATaatttattaaatt                                                                                   >  2:2939976/1‑117 (MQ=255)
                                               taataaAATTGATAATAATGGAAAGTCAAATGAAAATTTATTTTTTGAATATCTGATTTAAATGGATTATTAAACAATCC‑A‑‑‑TTTTTTTTTTTTTT‑AATAAAAAGACTCTCATAAGTGAGTCAATTGCg                                                                                <  2:3194630/128‑1 (MQ=255)
                                                  taaAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGAAACACTAAAGTGAGTCAATTTCGat                                                                              >  1:800963/1‑128 (MQ=255)
                                                   aaaaTTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AAAAAAAAAAATCACATAATTTATTAAATTGCTat                                                                              >  1:4603589/1‑128 (MQ=255)
                                                   aaaaTTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTTAAATAAAAATAATAAAAAAAGTTCTACAATTGCGat                                                                              >  1:3617765/1‑128 (MQ=255)
                                                      aTTGATATTAATGGAAATTCAAATTAATATTTATATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑‑TTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTAttt                                                                         <  1:3954991/128‑1 (MQ=255)
                                                       ttGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AAAAAAAATACTCAAATAATTGATTCAATTGCTattatt                                                                          >  2:511851/1‑128 (MQ=255)
                                                         gATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAAAAAAACATAAGTTATTAAATTTGGTTTATttaa                                                                       >  2:2350159/1‑128 (MQ=255)
                                                           tatTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑ATTTTTTTTTTTTTTTTT‑TATAAAAAAAAACACATAATTTAGTAAATTGATATTTTttat                                                                       >  1:4533237/1‑127 (MQ=255)
                                                            attatttgAAAGTTAAATTTATTTTTTTTTTTTGAATAGCTTTTTTAAATGTTTTTTTAAAAAATAA‑ATTTTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaat                                                                      <  1:1344951/121‑1 (MQ=255)
                                                            atTCATGGAAAGGCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaatt                                                                     <  2:1643334/128‑1 (MQ=255)
                                                              taatgttaattCAAATTAATATTTTTTTTTTTAATATCTTATTTAAATTTATTATTAAAAAATTC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaattat                                                                   <  2:1933076/118‑1 (MQ=255)
                                                              taaagttaaGTCAAATGAATATTTATATTTTGAATATCTGATTTAAAAGGATTTTTAAACAATAC‑ATTTTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaatta                                                                    <  2:4316308/121‑1 (MQ=255)
                                                               cATTGAAATTCAAATGAAAATTTAGATTTAGAAAAGCTGAATTAAATGGTTTAATAAACAATAC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaattatt                                                                  <  1:4296438/128‑1 (MQ=255)
                                                               cATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCAAATAAGTAATTCAATTTCAATTATttaattatt                                                                  >  2:4618630/1‑128 (MQ=255)
                                                                gtGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAATACTCAAATAATTTATTCAATTGATATTATttaattatta                                                                 >  2:910064/2‑128 (MQ=255)
                                                                aTGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAAACTCACAGAATTGATAAAATTTCGATTATtaaattatta                                                                 >  2:1110864/1‑128 (MQ=255)
                                                                 tGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAATAATAACAAAATTTAGTAAATTTAAATTATttaataaataa                                                                >  2:2687025/1‑128 (MQ=255)
                                                                            attaaTTTTTATTTTTTTAATAGCTTTTTTAAATTGATTATTAAAAAATAA‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTtga                                                     <  2:2194033/125‑1 (MQ=255)
                                                                               aaTATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTTAAAAAAAAAGAAAAAAATAATTTATTAAATTAATATTATTTAATTATTAAATAATATTtaataa                                                  >  2:596433/1‑126 (MQ=255)
                                                                                atatttatatttTTAATATCTTATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAAc                                                <  2:3780824/128‑1 (MQ=255)
                                                                                 tatTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAAAATCAAATAATTTAATAAATTGCTATTATTTAATTATTAATTTTTCTTTGAATAACt                                               >  2:2025585/1‑128 (MQ=255)
                                                                                 tatTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑‑TTTTTTTTTTTTTT‑AATAAAAAGAATCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTATTTGATGAACTa                                              >  2:312236/1‑128 (MQ=255)
                                                                                  ttttAGATTTTGTATAGCTGATTTATATGGATTATTTAACAATCC‑A‑‑‑TTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTAt                                             <  1:3218696/127‑1 (MQ=255)
                                                                                    ttAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAATTTAGTCAATTGCGATTATTTAATTATTAATTATTATTTTATGAACTAtt                                            >  2:1703596/1‑128 (MQ=255)
                                                                                      ataTTTTGTATATCTGTTTTAAATGGTTTATTAAACAATTC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTAttt                                           <  1:1596230/126‑1 (MQ=255)
                                                                                      aGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTAAATTGCGATTTTTTAATTATTAATTATTATTTGATGAAATATTTa                                          >  1:2126533/1‑128 (MQ=255)
                                                                                        aTTTTTAATATATTAATTAAATGTAATATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTAcc                                        <  2:3255130/128‑1 (MQ=255)
                                                                                        aTTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCCCATAAGTGAGTCAATTGCGATTATTTAATTTTTAATTATTCTTTGAATAACTATTTAcc                                        >  1:2972852/1‑128 (MQ=255)
                                                                                         ttttGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAATTGAGTCAATTGCGATTATTTATTTATTAATTATAATTTTATTAACTATTTACct                                       >  2:1588626/1‑128 (MQ=255)
                                                                                           ttttaTAGCTTATTTAAATTGATTATTAAAAAATCC‑ATTTTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACct                                       <  1:1152853/124‑1 (MQ=255)
                                                                                            tGAATAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGAAACACAAAAGTGTGTCAATTGCCATTATTTAATTTTAAATTTTTATTTTATGAACATTTTAcaatt                                     >  1:254624/1‑124 (MQ=255)
                                                                                              aaTAGCTGATTTAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑ATTAAAAAAAAACAAAAAATGTAGTAAATTGCGATTATTAAATTTTTAATTATTATTTTATGAATAATTTaaatttat                                   >  1:896212/1‑121 (MQ=255)
                                                                                                 atcttttttAATTTGTTTATTTAAAAATTC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTa                                <  1:2667636/122‑1 (MQ=255)
                                                                                                 atatGATTTAAATTTATTATTAAAAAATAC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAg                               <  1:2770993/125‑1 (MQ=255)
                                                                                                   tttaTTTAAATAGATTTTTAAATAATTC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAgg                              <  1:2202663/125‑1 (MQ=255)
                                                                                                       tttAAATGGATTATTAAACAATCC‑A‑‑‑‑TTTTTTTTTTTTT‑AAAAAAAAGAATAACATAATTTATTCAATTGAGATTATTTATTTATAAATAAATATTTGATTAAAAATTTACATTTCTTATGGTAAAtaa                       >  2:2597153/1‑128 (MQ=255)
                                                                                                        ttAAATGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTAAAATAATTTATTAAATTGCTATTATTTAATTATTAATTATTATTTTATTAAATATTTACAtttatttatttaaat                         >  2:102420/1‑121 (MQ=255)
                                                                                                        ttAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGCAGCACATATGTGAGTCATTTGCGATTATTTAATTATTAATTATTCTTTGATGAACAAGTTACCTTGATTTAGGTACCta                        >  1:4461772/1‑128 (MQ=255)
                                                                                                          aaaTGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGAATCAAATAAGTTAGGAAATTGCTATTTTTTAATTTTTAATTATTATTTTATTAAAAATTTACATTTATTTAGGTAaataat                      >  2:3875733/1‑128 (MQ=255)
                                                                                                           aaTGGATTATTAAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGAATAAAATAATTGAGTAAATTGCTATTTTTTAATTTTTATTTTTTATTTGATTAAATATTTACATTTATTTATTTAaataat                      >  2:3616096/1‑128 (MQ=255)
                                                                                                               gATTAATAAAAAATAC‑A‑‑TTTTTTTTTTTATTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTaattaatt                 <  1:3445374/128‑1 (MQ=255)
                                                                                                                    ttaAACAATAA‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTTATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTa            <  2:2272411/128‑1 (MQ=255)
                                                                                                                     taAACAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACACACATAAGTGAGACAATTGCGATTATTTAATTATTAATTATAATTTTATTAAAAATTTACCTTAATTTAGTTAACTAATTAATTAcaaa            >  1:3496725/1‑125 (MQ=255)
                                                                                                                     taAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGAATCACATAAGTGAGTCAATTGCGATTTTTTAATTATTAATTATTATTTGATGAACTATTTACCTTTATTTAGGTAAGTAATTATTTACATaa           >  2:1526726/1‑128 (MQ=255)
                                                                                                                      aaaCAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTTATTATTCTTTGATGATCTATTTAAATTTCTTTTGGTAAATAATTAATATCCTaa           >  2:3939155/1‑128 (MQ=255)
                                                                                                                      aaaCAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTTTTTAATTATTATTTATTATTTGATGAACTATTTACCTTTCTTTAGTTAAAAAATTAATTACCTAat          >  2:4075568/1‑128 (MQ=255)
                                                                                                                        aCAATCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTTATGAACTATTTACATTTATTTAGGTAACTAATTATTTACCTAata         >  2:2779195/1‑128 (MQ=255)
                                                                                                                        aCAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAatat        <  1:1004006/128‑1 (MQ=255)
                                                                                                                         taaTCC‑AT‑TTTTTTTTTTTTTTT‑AATAAAAAGACACCCATATGTGAGTAAATTGCGTTTATTTAATTTTTAATTTTTGTTTGATGAAATTTTTACATTTATTTAGGTAACTAATTAATTACATAattt        >  1:382080/2‑126 (MQ=255)
                                                                                                                         cAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGAATCACATAATTGAGTAAATTGCGATTATTTAATTATTAATTATTATTTTATTAAATATTTACCTTTATTTAGTTAAATAATTAATTACCTAAtatt       >  2:251079/1‑128 (MQ=255)
                                                                                                                            tcata‑‑TTTTTTTTTTTTTTT‑ATTAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAAtattat     <  2:3020976/124‑1 (MQ=255)
                                                                                                                             ac‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTAttt   <  2:3987152/127‑1 (MQ=255)
                                                                                                                              c‑A‑‑TTTTTTTTTTTTTTT‑TATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTAtttt  <  1:4137964/128‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                
TTGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCC‑A‑‑TTTTTTTTTTTTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTATTTT  >  CP016816/87775‑88028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑