Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816437,8810A.64.0% 830.7 / inf 952intergenic (‑185/+237)JCVSYN2_01985/JCVSYN2_01990glycosyl transferase/ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base A (187/153);  new base . (305/300);  total (492/460)
Fisher's exact test for biased strand distribution p-value = 1.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1414 total aligned reads displayed.

GAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437754‑438008
                                                                                                                                  |                                                                                                                               
gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑a                                                                                                                                 >  2:3187716/1‑128 (MQ=255)
gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑a                                                                                                                                 >  1:607440/1‑128 (MQ=255)
gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑a                                                                                                                                 >  2:1259850/1‑128 (MQ=255)
 aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACATCCATATTACCTATAGAG‑TTAATG‑‑at                                                                                                                                >  1:118921/1‑128 (MQ=255)
    cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atata                                                                                                                             >  2:1071570/1‑128 (MQ=255)
     ttATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatat                                                                                                                            <  1:3298016/128‑1 (MQ=255)
         ttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATTAAGCAAAGCAAAAACATCCATATTACCTATAGAG‑TTAATG‑‑atatatatat                                                                                                                        >  1:1561940/1‑128 (MQ=255)
         ttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATATAG‑TTAATG‑‑atatatatat                                                                                                                        >  1:3039876/1‑128 (MQ=255)
         aactacaaaaatAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatat                                                                                                                        >  2:3737688/12‑128 (MQ=255)
           ttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAACCCTCCATATTAACTATAGAG‑TAATTG‑‑atatatatatat                                                                                                                      >  1:3364584/1‑128 (MQ=255)
           ttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatat                                                                                                                      >  1:3733758/1‑128 (MQ=255)
           ctacaaaaatAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatat                                                                                                                      >  2:1727550/10‑128 (MQ=255)
            tacaaaaatAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatata                                                                                                                     >  1:2087407/9‑128 (MQ=255)
            tGTAGTTGTAAGTTTCATTTTTAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATATTAGGAAATCAAGCAAAGCAAAAACCTCCATTTTACCTATAGAG‑TTATCG‑‑atataaatatata                                                                                                                     >  1:214941/1‑128 (MQ=255)
             gTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatat                                                                                                                    <  2:579815/128‑1 (MQ=255)
             gTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAG‑TTAATG‑‑atatatatatatat                                                                                                                    >  1:2939754/1‑128 (MQ=255)
              tatttGTAAGTTTAATTTTTAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatata                                                                                                                   <  1:905727/125‑1 (MQ=255)
               aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTAGCTAGAGAG‑TTAATG‑‑atatatatatatatat                                                                                                                  >  1:4600959/1‑128 (MQ=255)
               aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGAAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatat                                                                                                                  <  2:4534132/128‑1 (MQ=255)
                gTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatata                                                                                                                 <  2:1436770/128‑1 (MQ=255)
                 ttGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatat                                                                                                                <  1:198716/128‑1 (MQ=255)
                  tGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatata                                                                                                               <  1:2727153/128‑1 (MQ=255)
                    tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatata                                                                                                             <  2:1576901/128‑1 (MQ=255)
                    tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAG‑TTAATG‑‑atatatatatatatatatata                                                                                                             >  2:1795823/1‑128 (MQ=255)
                    tAAGTTTAATTTTTAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatata                                                                                                             <  2:3240548/128‑1 (MQ=255)
                      aGTTTTATTTTTAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatatata                                                                                                           <  1:3901978/128‑1 (MQ=255)
                       gattCATTATTAATAAATATTAGAAATAAAAAATGTATTTTTAAAATATATATTTTAGGATATGAAGCAAATCAAAAACCTCCATATTACCTATAGAG‑TTAAAG‑‑atatatatatatatatatatatat                                                                                                          <  2:915871/126‑1 (MQ=255)
                       gTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatatatat                                                                                                          >  2:1322667/1‑128 (MQ=255)
                        tttCATTTTTAATAAATATTATAAATAAAAAATGTAATTTTAAAATAAATATTTTAGGAAAAGAAGCTAAGCAAAAACCTCCATATTACCAATAGAG‑TTAATG‑‑atatatatatatatatatatatcat                                                                                                         <  1:1062299/128‑4 (MQ=255)
                        tttCATTTTTAATAAATATTAGATATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATAAAAGAAAAAACCTCCATATTAACTCTAGAG‑ATAATG‑‑atatatatatatatatatatatata                                                                                                         <  2:4226213/128‑1 (MQ=255)
                        tttCATTTTTAATAAATATTAGATATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatatatata                                                                                                         <  1:381768/128‑1 (MQ=255)
                         ttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACATCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatatatatat                                                                                                        >  2:1153641/1‑128 (MQ=255)
                          tCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatttatatatatatatatatt                                                                                                       >  1:1405588/1‑127 (MQ=255)
                              ttttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatatatatatgcaag                                                                                                   <  2:4473912/128‑6 (MQ=255)
                              attttATAAAAATTAGAAATAAAAAATGTATTTTTAAAAAAAATATATTTTTACATTAACACAAAAAAAAACATCCCAATTACATCTAGAG‑TGAATC‑‑atatatatatatatatatatatatgcaagcg                                                                                                   <  1:3672722/127‑8 (MQ=255)
                               tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatgtatatatatgcaagc                                                                                                  >  2:2531727/1‑122 (MQ=255)
                               tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatatatatataatatc                                                                                                  >  2:2961392/1‑123 (MQ=255)
                                 taataaATAATAGAAATAAAAATTTTATTTTTAAAATAAATATTTTATTAAATTAATAAAAGCAAAAAACTCAATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatatatatgcaagcgatc                                                                                                <  2:2176706/128‑11 (MQ=255)
                                  aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatatatatatgcaagctat                                                                                               >  2:330529/1‑119 (MQ=255)
                                   atatatatTATATATAAAAATTTTTTTTTTATAATATATATTTTATTTAATTTAGCAAATCAAAAACCTCCATATTAACTATAGAG‑ATAAAT‑‑ATATATATATATATATATATATATATATGCAAGCGa                                                                                              <  1:3230279/128‑1 (MQ=255)
                                   ataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatatatatgcaatctatcat                                                                                              >  1:1879277/1‑116 (MQ=255)
                                   ataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatatatatattaaatcgatc                                                                                              >  1:4314036/1‑118 (MQ=255)
                                     aaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTACATATTACCTATAGAG‑TTAATG‑‑atatatatatatatatatatatatatgcaatctatcag                                                                                            >  1:503800/1‑116 (MQ=255)
                                     aaataTTAGAAAAAAAAATTTTATTTTTAAAATAAAATTTTTAGGAAATGAACAAAAGCAAAAACCTCCATATTAACTATAGAG‑TTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCa                                                                                        <  1:2467829/128‑1 (MQ=255)
                                      aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑ATATATATATATATATATATATATATATGAAAGAGATCa                                                                                           >  2:3793740/1‑128 (MQ=255)
                                         atTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATa                                                                                      <  2:3535543/128‑1 (MQ=255)
                                         atTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATaaa                                                                                    <  2:4349253/128‑1 (MQ=255)
                                          ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                     <  2:3375722/128‑1 (MQ=255)
                                          ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑ATATATATATATATATATATATATAT‑T‑CAAGCGATCAGCATaa                                                                                     >  1:4122042/1‑128 (MQ=255)
                                           tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATaaa                                                                                    >  2:3465766/1‑128 (MQ=255)
                                           tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATaaa                                                                                    <  1:1723210/128‑1 (MQ=255)
                                             gAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑ATATATATATATATATATATATAT‑‑‑T‑CAAGCGATCAGCATAAAATgg                                                                                >  2:2302953/1‑128 (MQ=255)
                                               aaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATgg                                                                                >  1:1658712/1‑128 (MQ=255)
                                                 tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑ATATATAT‑T‑TATATATATATATATATGCAAGCTATCATCATAAAATGGTg                                                                              >  1:1465874/1‑128 (MQ=255)
                                                   aaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGATCTGCATAAAATGGTGAAAttt                                                                        >  1:1793439/1‑128 (MQ=255)
                                                    aatatGTATTTATAAAATAAATATTTTATGAAATGAATCAAATCAAAAAACTCCATATTAACTATAGAG‑TTAAT‑‑‑‑‑‑TATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAtt                                                                         <  2:4062098/124‑1 (MQ=255)
                                                        tGTATTTTTAAAATAACTATATTAGTTAATGTAGCAAACCAAAAACCTCCAAATAAGCTATATAG‑TTAATG‑‑ATATATATA‑‑‑A‑ATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGa                                                                     <  1:3552618/128‑1 (MQ=255)
                                                        tGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGAAAGCGATAAGCAAAAAATGTTGAAAtatata                                                                     >  2:4618999/1‑126 (MQ=255)
                                                          tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGAAAGAGATCAGCATAAAATGGTGAAATTTAGATc                                                                   >  2:518483/1‑128 (MQ=255)
                                                           aTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑ATATATATATATATATATATATATATA‑‑CTAGCTATCATCATAAAATTGTGAAATATAGAt                                                                    >  2:1017194/1‑128 (MQ=255)
                                                              tttAAAATAAATATTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  2:74527/128‑1 (MQ=255)
                                                                tAAAATAAATATATTAGGAAATGACTCAAAGCAAAAACCTCCATATTACCTCTAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  1:2598819/128‑1 (MQ=255)
                                                                   aataaataTTTTAGGAAATGAAGAAAAGCAAAAAACTCCATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTg                                                            <  2:2875639/128‑1 (MQ=255)
                                                                    ataaataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑ATATATATATATATATATATATAT‑‑‑T‑CAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTc                                                         >  2:1514354/1‑128 (MQ=255)
                                                                    ataaataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTat                                                     >  1:4403105/1‑127 (MQ=255)
                                                                     taaataTTTTAGGAAAACAATCAAAGCAAAAACCTCCATATTAACTATAGAG‑TTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtcg                                                            <  1:100263/128‑3 (MQ=255)
                                                                        atatTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATATAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTCAAATTTAGATCTGAGTTGGTCtt                                                       >  2:2225094/1‑128 (MQ=255)
                                                                         tatTTTAGGAAATCAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTa                                                      <  1:2206104/128‑1 (MQ=255)
                                                                          atTTTATGAAATGAAGCAAATCAAAAACCTCCATATTATCTATAGAG‑TTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAt                                                   <  2:3028474/128‑1 (MQ=255)
                                                                            tttATGAAATGTAGCAAAGATAAAAACTCAATATTACGTATAGAG‑TT‑‑TT‑‑TTATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAt                                                   <  2:2436257/128‑1 (MQ=255)
                                                                            tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGAGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAt                                                   >  2:2642900/1‑128 (MQ=255)
                                                                                ggAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATGATATATATATATATATATATATATATATATGCTAGCGATCAGCATAAAATTGTGATATTTAGATCTGAGTTGGTCTTaatt                                                   >  2:2364983/1‑126 (MQ=255)
                                                                                 gAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAATATGGTGAAATTTATATCTGAGTTGGTCTTAAATTTGTa                                              >  2:1701974/1‑128 (MQ=255)
                                                                                  aaaTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑ATAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                               <  2:653071/128‑1 (MQ=255)
                                                                                      gAAGCAAAGAAAAAACATCCATATTACCTATAGAG‑TTATTG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                       <  1:3153912/128‑1 (MQ=255)
                                                                                       aagcaaagcaAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGATATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttat                                      >  1:2846488/1‑128 (MQ=255)
                                                                                        atcaaaccaaaAACATCTATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                       <  1:1287639/126‑1 (MQ=255)
                                                                                        agcaaagcaaAAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATATATATCTGAGTTTGTATTAAATttttattttttatt                                     >  2:2020032/1‑128 (MQ=255)
                                                                                          caaagcaaaAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttatt                                     <  2:838245/128‑1 (MQ=255)
                                                                                          caaagcaaaAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCCGCATAATATGGTGTAATTTAGATGTGAGTTGGTATTATATTTTTTGTTtttattta                                   >  1:4212812/1‑128 (MQ=255)
                                                                                             agcaaaAACCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGAAGAAAATGGTGAATTATATCTGTGAGGGTGTCTTAATTTTGTAGTTTttatttat                                  >  1:700860/1‑128 (MQ=255)
                                                                                              caaacaaacacaataataACTATAGAGATTAAT‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattta                                   <  2:4292749/116‑1 (MQ=255)
                                                                                                  aaaCCTCCATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGAAATCGATCAGCATAAAATGGTGATATTTAGATCTGAGTTTGTCTTAAATTTGTAGATTTTATTTATAGttt                             >  2:2728548/1‑128 (MQ=255)
                                                                                                    accaacATATAACCTATAGAG‑TTAA‑‑‑‑AGATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                           <  1:2275080/123‑1 (MQ=255)
                                                                                                     acaccAAATTACATAAAGAG‑ATAAT‑‑‑‑TATATATATATATAAATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                          <  1:2404769/125‑1 (MQ=255)
                                                                                                       tCCATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCTAGCGATCAGCATAATATTGTGAAATTTAGATCTGAGTGGGTCTTAAATTTTTATTTTTTATTTATAGTTtatata                        >  1:3974510/1‑126 (MQ=255)
                                                                                                        ccATATTACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAATTTTAGATATGAGTTGGTCTTATTTTTTTAGTTTTTATTTATAGTTTTTATAg                       >  1:2663809/1‑128 (MQ=255)
                                                                                                         cATATTACCTATAGAG‑TTAATG‑‑ATATATATATATATATATATATATAT‑T‑CAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAATTTTGTAGTTTTTATTTATAGTTtatatatt                      >  1:792779/1‑124 (MQ=255)
                                                                                                         cATATTACCTATAGAG‑TTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCTAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTATTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                    >  1:3475456/1‑128 (MQ=255)
                                                                                                          atatTAACTATAGAG‑TTAATG‑‑ATATATATAT‑‑‑T‑TATATTTATATTTGCAAGCGATAAGAATAAATTTGTGAAATTTTGTTCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                   <  1:4482996/128‑1 (MQ=255)
                                                                                                           tatTACTTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                    <  2:3864007/128‑1 (MQ=255)
                                                                                                             ttACCTATAGAG‑TTAATG‑‑ATATATATATATATATATATATATAT‑T‑CAAGCTCTCAGCATAAAATTGTGAAATATATATCTGATTTGGTCTTAATTTTATAGTTTTTATTTAGAATATATATAGTttat                  >  1:454412/1‑128 (MQ=255)
                                                                                                              tACCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaata                 <  2:4163917/128‑1 (MQ=255)
                                                                                                               aCCTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGGATAAAATGTTGATATTTAGATCTGAGTTGGTGTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtattaa                >  1:235921/1‑128 (MQ=255)
                                                                                                                ccTATAGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTTTAGTTTTTATTTTTAGTTTATAAAGATaataat               >  2:3998939/1‑128 (MQ=255)
                                                                                                                ccTATAGAG‑TTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGAATAAAATGTTGAAATATAGATCTGAGTTTGTCTTATATTTATATTTTTTATTTATATTTTATAATGTTAATAAttt             >  2:1924064/1‑128 (MQ=255)
                                                                                                                   ataGAG‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa            <  1:4034445/128‑1 (MQ=255)
                                                                                                                      gag‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAt         <  2:2113212/128‑1 (MQ=255)
                                                                                                                      gag‑TTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGAGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAt         <  2:3667145/128‑1 (MQ=255)
                                                                                                                          ttATTG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtt        <  2:2785840/128‑1 (MQ=255)
                                                                                                                                  |                                                                                                                               
GAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑TTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437754‑438008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑