Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2500T.66.7% 1601.6 / inf 1420intergenic (+214/‑328)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (199/264);  new base . (648/281);  total (859/561)
Fisher's exact test for biased strand distribution p-value = 9.69e-22
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1740 total aligned reads displayed.

ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACT  >  CP016816/165123‑165378
                                                                                                                               |                                                                                                                                   
 taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑t                                                                                                                                   >  2:4448057/1‑128 (MQ=255)
    tatTTAGTTTCATTAATTTATCACACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑tttt                                                                                                                                >  2:2262942/1‑128 (MQ=255)
        tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑tttttttt                                                                                                                            >  2:183998/1‑128 (MQ=255)
        tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATAATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAATATAGCt‑ttttttta                                                                                                                            >  1:4114739/1‑127 (MQ=255)
          gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑tttttttttt                                                                                                                          >  1:4156097/1‑128 (MQ=255)
           tttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑ttttttttttt                                                                                                                         >  2:717519/1‑128 (MQ=255)
           tttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑ttttttttttt                                                                                                                         >  2:2621078/1‑128 (MQ=255)
             tCATTAATTTATCGCACTTGTATGAATTAGAAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑atatttttttttt                                                                                                                       >  1:24156/1‑128 (MQ=255)
                ttAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑tttttttttttttttt                                                                                                                    >  1:342642/1‑128 (MQ=255)
                    tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTAGAACTTGTAAAAAATATCT‑TTATTTTTTTTTTTTTatat                                                                                                                >  1:3546051/1‑128 (MQ=255)
                    tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGAAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑tatttttttttattttaaaa                                                                                                                >  1:2027584/1‑124 (MQ=255)
                     ttttagCACTTGTATGAAATATTAAGAAACTAAAACTTTTATCTTTTTATATATTTTTTTTTTATTCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCt‑tttttttttttttttataatg                                                                                                               <  2:1237429/123‑7 (MQ=255)
                     ttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑ttttttttttttttttatttt                                                                                                               >  1:1805620/1‑123 (MQ=255)
                     ttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTTtatt                                                                                                               >  1:547673/1‑127 (MQ=255)
                       ttCGCACTTGTATTAATTAGTAATAAACTAAAAATAATATATTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑tttttttttttttttataatgga                                                                                                             <  2:3463441/127‑9 (MQ=255)
                       aTCTCACATGTATGAATTCGTAAGAAACTAAAAATATTATAGTTTTATTTATTTTTTGTATATTCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTtataatgg                                                                                                             <  1:2965622/128‑5 (MQ=255)
                       aTCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑tttttttttttttttataatgga                                                                                                             >  1:2231254/1‑120 (MQ=255)
                         cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCt‑tttttttttttttttttaaatgtaa                                                                                                           >  1:4379804/1‑120 (MQ=255)
                         cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTatattgtaa                                                                                                           >  1:977580/1‑123 (MQ=255)
                           cACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTtataattgatat                                                                                                         >  2:4367323/1‑120 (MQ=255)
                             cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTATATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTtataatttaaaaat                                                                                                       >  2:3741040/1‑118 (MQ=255)
                                ttttttattattAATAAAAAAAAAATATTTATTTTTTAATTTTTTTTTTTTTTTGCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAA‑A‑TT‑CTTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑aaa                                                                                                <  1:1423749/122‑1 (MQ=255)
                                 tATGAATTATTAATAAACTAAAAATATAATCTTTTTTTATATTTTTTGTATATTCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAAtt                                                                                              <  2:4590435/128‑1 (MQ=255)
                                 tATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATA‑T‑AAttt                                                                                              >  1:3692634/1‑128 (MQ=255)
                                 tATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTAGTAAAAAATA‑‑T‑CTTTTTTTTTTTTTTTTAATAATTGAATTA‑T‑aaaa                                                                                               >  1:4646363/1‑127 (MQ=255)
                                  aTGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTTTTTaaatgtaaatttta                                                                                                  >  1:1052627/1‑116 (MQ=255)
                                   tGAAATATTAAGAAACTAAAACATTTTTCTTTTTTTATAATTTTTGTTTATGAAAATTTTTAAAAAATTAATTTGAACTTTTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAAtt                                                                                              <  2:3610866/128‑1 (MQ=255)
                                     ttttatttaaaaaataaaacttTTTTTTTTTATTATATTTTTTTTATTTTTAAATTTTTAAAAAATTTATTTTAACTTTTAAAAAATA‑TT‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAAtttt                                                                                            <  1:3241645/118‑1 (MQ=255)
                                     aaTTATTAACAAACTAAAATATTTAACTTTTTATATATTTTTTTTTTAATCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAg                                                                                          <  1:1593461/128‑1 (MQ=255)
                                     aaTTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTAAAATATAAAAA‑T‑AAATTTTa                                                                                           >  2:3321012/1‑128 (MQ=255)
                                       ttAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTATTTTTTTTTTTTTTTA‑AATTGAAATATT‑AAATTTTAg                                                                                          >  1:2562839/1‑128 (MQ=255)
                                        tattaataaACTAAAAATATTATATTTTTATATATTTTTTTTATATTCAAATTTTTAAAAAATTTATTTTAACTTGTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTa                                                                                       <  2:4279927/125‑1 (MQ=255)
                                        tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATTATGTAAATA‑T‑AAATTTTTGGt                                                                                        >  1:3917006/1‑128 (MQ=255)
                                         aGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATA‑T‑AAATTTTAGTTa                                                                                       >  2:2783775/1‑128 (MQ=255)
                                          ctaatcaactaaaacaaTTTTCTTTTTATATATGTTTTGTTTATTCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATTGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTAtt                                                                                     <  1:872838/122‑1 (MQ=255)
                                            taataactaaaaataTTATATTTTTATTTTTTTTTTGTATATTCAAAATTTTAAAAAAAAAATTTTAAAATGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTAttt                                                                                    <  1:3766567/124‑1 (MQ=255)
                                            aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATA‑T‑AAATTTTAGtttttt                                                                                    >  1:115546/1‑128 (MQ=255)
                                              gAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATTATGGAAATT‑T‑AATTTTTAGGTAttttt                                                                                  >  1:4001871/1‑127 (MQ=255)
                                              gAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTTAAATA‑T‑AAATTTTATTTAttttt                                                                                  >  2:508768/1‑127 (MQ=255)
                                               aatataaaaattTTATTTTTTTTTATATTTTTTTTTTATGCAAATTTTTAAAAAATTAATTTTAAATTTTTAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTttgt                                                                                 <  2:4203167/124‑1 (MQ=255)
                                                 actaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TATTTTTTTTTTTTTTTTATAATTGAAATA‑T‑AAATTTTTGTTATtttttt                                                                                >  1:669161/1‑128 (MQ=255)
                                                  ctaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATATTGTAAATA‑T‑AAATTTTATGTATTTttttgt                                                                              >  2:2500153/1‑128 (MQ=255)
                                                   taaaaataTTTTCTTTTTATATATTTTTTGTATATTCAAATTTTTAAAAAATTAATTTGAACTTTTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCt                                                                            <  2:3885435/128‑1 (MQ=255)
                                                      aactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATA‑A‑AAATTTTATTTTTTTTTTTGtatat                                                                          >  1:3319647/1‑127 (MQ=255)
                                                       actaTTATCTTTTTATATATTTTTTGTATATTCAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGt                                                                        <  2:232231/128‑1 (MQ=255)
                                                       actaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATA‑T‑AAAATTTTGTTTTTTTTTTTTATaa                                                                          >  2:3135424/1‑128 (MQ=255)
                                                        ctaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTAAAATA‑T‑AAAATTTATTTATTTTTTTTTATaat                                                                         >  2:1999641/1‑127 (MQ=255)
                                                        ctaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGTAATTA‑T‑AAATTTTAGTTATtttttttgatattta                                                                       >  1:3834504/1‑119 (MQ=255)
                                                         tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTG‑AATA‑TAAAATTTTAGTTATTTTTTTTTATAATTa                                                                       >  2:4069790/1‑128 (MQ=255)
                                                         tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAG‑‑‑ATTTTTTTTTTTTTTTTTATAATGTAAATA‑T‑AAATTTTATTTATTtttttgacatatct                                                                       >  2:291868/1‑120 (MQ=255)
                                                          attatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATA‑T‑AAATTTTAGGTATTTTTTTGTCTAAGTAt                                                                      >  1:4456848/1‑128 (MQ=255)
                                                          attatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTAAAATGAAAATA‑T‑AAATTTTATTTTTTTTTTTTTATAATTAta                                                                     >  2:165361/1‑127 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATA‑T‑AAATTTTATTTATTTTTTTTTATAATTAt                                                                      >  2:3387691/1‑128 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTAATAATGAAAAAA‑T‑AAAATTAAGTTATTTTTTTATATAAGTaaa                                                                     >  1:2737102/1‑126 (MQ=255)
                                                           ttatCTTTTTAGAGATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTT‑‑‑‑TAATGGAAATA‑T‑AAATTTTAGTTATTTTGTTTTATAAGttaata                                                                   >  1:454488/1‑123 (MQ=255)
                                                           ttatATTTTTATATATTTTTTTTATTTTAAAATTTTTAAAAAATTAATTTTAAATTGTAAAAAATA‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                     <  2:1501861/128‑1 (MQ=255)
                                                            tatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTTAATTA‑A‑TAAATTTATGTATTTTTTTTTATAATTAtat                                                                    >  2:1360347/1‑126 (MQ=255)
                                                            tatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTATTTTTTTTTTTTTATAAAGTAAATA‑T‑AAATTTTATTTATTTTTTTTTATAATTAtaa                                                                    >  1:2619824/1‑126 (MQ=255)
                                                            tatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATA‑T‑AAATTTTATGTATTTTTTTTTATAAgagatcg                                                                   >  2:4138960/1‑122 (MQ=255)
                                                            attattattATATATTTTTTTTTTATTTAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAATA‑‑T‑CTTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCt                                                                    <  2:3685269/121‑1 (MQ=255)
                                                               cTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTATTTTTTTTTAAAAAAGAAAATA‑T‑AAATATTACTTATTTTGTTTAATAAGAATCTaaa                                                                 >  2:934688/1‑128 (MQ=255)
                                                               cTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaa                                                                >  1:125944/1‑128 (MQ=255)
                                                                tttttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATA‑T‑AAATTTTATTTATTTTTTTTTATAATTATCTaaaa                                                                >  2:4515425/1‑128 (MQ=255)
                                                                   ttttatatTTTTTTTATTTTAAAATTTTTAAAAAATTAAATTTAAATTTTAAAAAAAATAT‑TTTTTTTTTTTTTTTTTTATAATGTAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaa                                                               <  2:239020/124‑1 (MQ=255)
                                                                   ttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTT‑‑‑‑ATTGAAATA‑T‑AAATTTTTTGTTTTTTTTTTTATAAATATATTAAAAAATa                                                           >  1:1673276/1‑128 (MQ=255)
                                                                   ttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAAAA‑T‑AAATTTTAGTTATTTTTTTTTAAAATTAAATaaaaaa                                                              >  2:1720216/1‑128 (MQ=255)
                                                                   ttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TATTTTTTTTTTATTTATAATGAAAATA‑T‑AAATTTTATTTATATAGTTCTATAAGTATCTAAAAAAAt                                                            >  2:1581008/1‑128 (MQ=255)
                                                                     ttttatTTTTTTTATATTAAAATTTTTAAAAAAATAATTTTAACTTTTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                          <  1:1000910/125‑1 (MQ=255)
                                                                     aGATTTTTTTTTTTTATGCAAATTTTTAAAAAATAAAATTGAAATTGTAAAAAATA‑‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                         <  2:838882/128‑1 (MQ=255)
                                                                           ttttttttTATGTAATTTTTAAAA‑AATTTATTTGTACTTTTTAAAAA‑‑‑‑T‑TTCTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                  <  1:3066791/128‑1 (MQ=255)
                                                                            ttttttttttttaaaTTTTTAAAAAATTTATTTTTAATTGTAAAAAATA‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGa                                                    <  2:3237452/116‑1 (MQ=255)
                                                                              ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTAAAATGTAAATA‑T‑AAATTTTATTAATTTTTTTTTATAATTAaataaaaaaataaaaattaaa                                                  >  2:2174255/1‑123 (MQ=255)
                                                                                gTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTAT‑‑TGTAATTT‑A‑AAATTTTAGTTATTTTTTTTTATAATTATATAAAAAAATATAAAGTAAAAAat                                              >  2:3008901/1‑128 (MQ=255)
                                                                                  atatGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTGAAATA‑T‑AAATTTTATTTATTTTTTTGTATAAATTAATAAAAAAAAATAAAATAAAAAat                                              >  1:2488678/1‑128 (MQ=255)
                                                                                      gCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTAAAATA‑T‑AAATTTTATTTATTTTTTTTTATAATTATATAAAAAAATAAAAATTAAAAAAttttt                                          >  2:5654/1‑127 (MQ=255)
                                                                                       cAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTTT‑TAATGGAAAAA‑T‑AAATTTTAGTTATTTTTTTTTAAAATAATATAAAAAATAAAAAAGTAAAAattattt                                          >  1:2854819/1‑127 (MQ=255)
                                                                                        aaaTTTTTTAAAAATTTATTTTAAATTTTTAAAAAT‑‑‑T‑TCTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTa                                       <  1:774131/128‑1 (MQ=255)
                                                                                        aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATA‑T‑AAATTTTAGTTATTTTGTTTTCTAATTATCAAAAAAAATATAAAGTAAAAAATATTGTTa                                       >  2:618318/1‑128 (MQ=255)
                                                                                           ttttTAAAAAATTAATTTTAACTTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTaaa                                     <  2:1051899/128‑1 (MQ=255)
                                                                                              ttaaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAATTA‑T‑AAATTTTTGTTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTaaaatt                                  >  2:3546740/3‑126 (MQ=255)
                                                                                               taaaaaaTTAATTTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTTTATAATTTAAATA‑A‑AAATTTTTTTTTTTTTTTTTTATATTTTTATAAAAAAATAAAAATAAAAAAATATTTTTaaata                                   >  2:3820833/2‑126 (MQ=255)
                                                                                                aaaaatttaatttttaatttTAAAAAATA‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTaa                                <  2:2084296/122‑1 (MQ=255)
                                                                                                aaaaaaTTAATATGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTTTTAAATATAAAAA‑T‑AATATTTAGGTAATTTTTTGTATAAGAAAATAAAAATAAAAAAAATATAAATTATTTATaaaaat                                  >  2:1294462/1‑126 (MQ=255)
                                                                                                  aaaattaattTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTTTATATTGTAAATA‑T‑AAATTTTATGTATTTTGTTGTCTAATTATATAAAAAAATATAAAGTAAAAAATATTTTTTAAATTaa                                >  2:3991434/3‑128 (MQ=255)
                                                                                                   aaattaattTTTAATTTTAAAAAATA‑TT‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATa                              <  1:1353500/127‑1 (MQ=255)
                                                                                                    aattaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTTGTTATTTTTTTTTGTATTTATATAAAAATATATAAAGTAAAAATTTTTTTTAAAATTaaatat                            >  2:1915802/1‑124 (MQ=255)
                                                                                                    aattaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTAAAATTAAAATA‑T‑AAATTTTAGTTTATTTGTTTTATAATTAAAAAAAAAAAAAAAAAATAAAAAATATTTTTaaaataaaaaaa                            >  1:1900381/1‑120 (MQ=255)
                                                                                                     attaattTTAATTTTTAAAAAA‑AG‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTa                           <  1:4313083/128‑1 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTATGTATTTTTTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTTTTAAAATTAATaat                            >  2:115757/1‑126 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTTTTTTGTTGTCTAATTATATAAAAAAATATAAAGGAAAAAATATTGTTAAAAGTAATACTa                           >  2:2548238/1‑128 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTTTTTTATAATTATATAAAAAAATATAAAGTAAAAAATATTTTTTAAAGTAataata                           >  2:1435091/1‑128 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTTTTGTCTAAGTATCTAAAAAAATAGAAAGTAAAAAATATTTTTAAAAGtaataataa                          >  1:4238129/1‑128 (MQ=255)
                                                                                                      ttatttTTAAATTTTAAAAAATA‑‑T‑TTTTTTTTTTTTTTTTTTATAATTGAAATA‑T‑AAATTTTAGGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGAAATACTaa                          <  2:2690852/128‑1 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGTAAAAA‑A‑AAATTTTATTTATTTTTTTTTATAATTAACAAAAAAAATATAAAGTAAAAAA‑ATTTTTaaaaattaaaaaaaaa                        >  1:3616810/1‑116 (MQ=255)
                                                                                                       taattTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTT‑‑TAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAATTTACTAAAAAAATAGAATGGAATATAATTTGTTAAAAGTAATAATaaa                         >  1:2354946/1‑128 (MQ=255)
                                                                                                       taattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTATAAGATTAAAAAAAAATATAAAGTAAAAAAATTTGTTAAAAGTATTAATaaaa                        >  1:1742350/1‑128 (MQ=255)
                                                                                                           ttGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTAAAATTAAAAAA‑A‑AAATTTTATGTATTTTTTTTTAAAAATAAATAAAAAAATAAAAATAAAAAAATATTTTAAAAAATaaaaaaaaaaata                     >  1:3161731/1‑117 (MQ=255)
                                                                                                                   gTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATA‑T‑AAATTTTTGTTATTTTTTTGTATAATTAAATAAAAAAATAAAAAGTAAAAAATATTTTTAAAATTAATAAAAAAATTATTTAAttt             >  1:1510152/1‑126 (MQ=255)
                                                                                                                     aaaaaaaaGCTATTTTTTTTTTTTTTTTTTTAAATGTAAATA‑A‑AAATTTTTGTTATTTTTTTTTATAATTATAAAAAAATAAATAAAGTAAAAAAATTTTTTAAATGTAAAAATAAAATTATTAAAtt              >  1:2163466/1‑127 (MQ=255)
                                                                                                                           atttt‑ttttttttttttttttttATAATTGTAATA‑T‑TAATTTTATTTATTTTGTTTTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta       <  2:3179788/124‑1 (MQ=255)
                                                                                                                               |                                                                                                                                   
ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑T‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACT  >  CP016816/165123‑165378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑