New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 203895481 (0.260)273 (0.130)
+TTT		 76/214 24.6 33.7% intergenic (+279/+179) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
?CP016816 203896 = 547 (0.260)intergenic (+280/+178) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 336 total aligned reads displayed.

TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP016816/203769‑203895
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  >  CP016816/203896‑204022
                                                                                                                               |||||                                                                                                                                  
TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑T                                                                                                                                       >  1:988600/1‑128
  atTTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTTAACCCATTTTTAAAAAATCATATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTAAAAGTGTATTTTTTAGGCTTG‑TTT                                                                                                                                     <  1:400689/126‑1
  AATTTTTTTTAAAAAAAAAAATAAAAATTTTTAATTTAAACCCATTTTTAAAAAATCCTATTTTCTAGGCTTTTTATTATAATTATAAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT                                                                                                                                     <  2:1654563/128‑1
    TTTTTTTTTTTAAAAAAATAAAAAATTTTTCATTTTAAGGCATTTGTAAATAAGCCTATTTTTTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TT                                                                                                                                  <  1:2441302/128‑1
    TTTTTTTTAT‑AAAAAAAATTAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTT                                                                                                                                 >  2:480042/1‑128
     TTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTT                                                                                                                                 >  1:753255/1‑128
      TTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTT                                                                                                                                <  2:3449666/128‑1
      TTTTATAAAAAAATAAATAAAAATATTTCATTTAAAGCCAATTGTAAAAAAGCCTATGTTCTAGGCTTTTTTTTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTT                                                                                                                                <  2:1361447/128‑1
       TTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTT                                                                                                                               >  2:3893607/1‑128
        TTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCTTTTGTAAAAATGCCTTTGTTCTATGCTTTTTATTATAGTTATCAAAATTACAACGCTTTCAAAGTGTTTTTTTTAGGATTG‑TTT‑TTTTTT                                                                                                                              >  2:1790574/1‑128
        TTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTTTTATACTTATCAACATTACAACGCTTTCAATGTGTATTTTTTAGGCTTG‑TTT‑TTTTTT                                                                                                                              >  2:1129573/1‑128
         TTTATAAAAAAAAATAAAAATTTTTCATTTAAATCCATTTTTAAAAAACCCAATGTTCTATGATTTTTATTATACTTATCAACATTACAACGCTTTCAAAGGGTATTTTTTAGGCTTG‑TTT‑TTTTTTT                                                                                                                             <  1:1120599/128‑1
         TTTATAAAAAAAAATAAAAATTTATAATTTAAATCCATTTTTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTT                                                                                                                             <  2:75462/128‑1
               AAAAAAAATTAAAATTTTTCATTTAAAGACATTTGTAAAAAAGAATATGTTCTATGATTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTATGCTTG‑TTT‑TTTTTTTTTTTTT                                                                                                                       >  2:3997040/1‑128
                AAAAAAATAAAAATTTTTCATTTAAAGCAATTTGTAAAAACCCCTATGTTATAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTTTATTTTTTCGGCTTG‑TTT‑TTTTTTTTTTTgta                                                                                                                      <  1:3655677/128‑4
                 AAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGTCTTG‑TTT‑TTTTTTTTTTTTTTT                                                                                                                     >  2:833039/1‑128
                  AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT                                                                                                                    >  2:1174552/1‑128
                  AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTa                                                                                                                    >  2:3859313/1‑127
                  AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT                                                                                                                    >  2:4172074/1‑128
                  AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTGTTT                                                                                                                    >  1:3983910/1‑128
                  AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTATAGGATTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTT‑TTT‑ATTTTTTTTTTTTTgt                                                                                                                    >  2:4278701/1‑126
                    AAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTTtt                                                                                                                  >  2:4431525/1‑126
                      ATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTT‑TTT‑TTTTTTTTTTTTTTTTaaaa                                                                                                                >  2:3358119/1‑124
                      ATAAAAATTTTTCATTTAAACCCATTTTTAAAAAACCCTATGTTATATGCTTTTTATTTTAATTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTgtaaaa                                                                                                                <  2:3526029/128‑7
                       TAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TAT‑TTTTTTTTTTTTTTagtaaaa                                                                                                               >  2:2555820/1‑121
                          AAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑AAAAAATA                                                                                                           >  2:237472/1‑128
                            ATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTATTTTTTTTT‑T‑AAAATAAAA                                                                                                        >  2:884580/1‑128
                             TTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCACCATTACAACGCTTTCAAAGTGTAGTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑TAAAATTAAAt                                                                                                        >  2:2444017/1‑127
                             TTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTTCAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAtt                                                                                                       >  2:532614/1‑126
                             TTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTCAAATTGTATTTTTTAGGCTAG‑TTT‑TTTTTTTTTTTTTTTT‑TAAAAAAAAAt                                                                                                        >  2:3843558/1‑127
                             TTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTGTAAAAAATAAA                                                                                                         >  2:1535821/1‑128
                              TTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAt                                                                                                       >  2:4314068/1‑127
                              TTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTAGTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTTaaacataaactt                                                                                                        >  1:2334480/1‑116
                               TTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑TAAAAATAAAAtt                                                                                                      >  1:1159958/1‑126
                                 TCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTTTATTTTTTAGACTAG‑TAT‑TTTTTTTTTTTTTTTT‑TAAAAAAAAAAATAA                                                                                                    >  2:2924300/1‑128
                                  tATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAAattatt                                                                                                  >  2:640795/2‑122
                                    TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TT‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAATAT                                                                                                 >  2:4122028/1‑128
                                      TAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTTGTTAAAATAAAAGTAAGATT                                                                                                >  2:3649820/1‑128
                                      TAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTTAAAAAAAAAAgattcatttg                                                                                                >  1:2308394/1‑118
                                      TAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAATTATGATTTG                                                                                              >  2:3735038/1‑128
                                       AAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑TAAAATTAAAAGTAATATTTG                                                                                              >  1:1536767/1‑128
                                       AAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAATTAATATTTtt                                                                                             >  2:2781067/1‑126
                                        AAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑TTAAAATAAAATTAATTTTTGG                                                                                             >  1:3415012/1‑128
                                        AAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAATTAATATTTGGA                                                                                            >  2:3571557/1‑128
                                         AGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAAGTAATATTTTGAT                                                                                           >  2:2085129/1‑128
                                                  TAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAAGTAATATTTGGATCAACCAAAt                                                                                  >  2:561310/1‑127
                                                     AAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAATTAAGATTTTGATCAAACACA‑AT‑TA                                                                             >  1:3026916/1‑128
                                                       AAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑T‑AAAATAAAATAAAGATTTGGATAAACAAAA‑Aaatat                                                                            >  1:4171979/1‑123
                                                         GCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTTT‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGAATAAACAAAA‑AA‑TAT                                                                            >  2:3594000/1‑128
                                                         GCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TT‑TTTTTTTTTTTTTTTTGTTAAAATAAAATTATAATTTGGTTCAAACAAA‑Aattaaa                                                                           >  2:3611662/1‑122
                                                             ATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAATTAAGATTTGGATAAACCAAA‑Aaaattaaaaaa                                                                      >  2:4021113/1‑117
                                                               GTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑TAAAAATAAAATTAATATTTGGAAACAACAAA‑AA‑GATATCAAAAA                                                                    >  1:534820/1‑128
                                                               GTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TT‑TTTTTTTTTTTTTTTTGTAAAATATAAAGTAATATTTGGTTCCAAAAAA‑AA‑TATTTAAAAAA                                                                    >  2:299005/1‑128
                                                                tttTAGGTTTTTTATTAAAATTTTCAACAATAAAACGCTTTCAAAGTTTATTTTTTATGCTTG‑‑TT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAA‑AC‑TATATCAAAAAA                                                                   <  1:4479982/125‑1
                                                                TTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAATTAATATTTTGATCAACAAAA‑AA‑TATATAAAAAAAA                                                                  >  2:2611505/1‑128
                                                                 TCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAATTATTGGATAAACAAAA‑AA‑AAAAACAAAAAA                                                                   >  2:3095249/1‑128
                                                                  CTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑TAAAAAAAAATTAAAGATTTGGCTC‑ACCAAA‑ACATATAACAAAAAAta                                                                 >  1:4127359/1‑126
                                                                   TAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTTGTTTTTTTTTTTTTTTTGTAAAAATAAAAGTTAATTTTGGGTCACCCAAA‑AC‑TATATCTAAAAAA                                                                  >  1:3882158/1‑128
                                                                    AGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAAGTATGATTTGTTTGAACCAAA‑AA‑TAATTCAAAAAAATA‑AA                                                             >  2:4335134/1‑128
                                                                     GGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑T‑AAAATAAATTTAATATTTTGATAGACCAAA‑AC‑TATATAAAAAAAATT‑AAA                                                            >  1:4611803/1‑128
                                                                       CTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAATTTAAGATTTGTATCAACCAAA‑AC‑TATATAAATAAAAAT‑AAAAA                                                          >  1:282482/1‑128
                                                                        TTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑TAAAAATTAAATTAAAATTTTGATAAACAAAA‑AA‑TATAAAAAAAAAATT‑AAAAA                                                          >  2:4558785/1‑128
                                                                          TTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAAGTAATATTTTGATAAAACAAA‑AA‑TATATAAAAAAAATT‑AAAAAAAA                                                       >  2:2815278/1‑128
                                                                          TTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGAT‑AACCAAA‑AA‑CTTTTAAAAAAAATT‑TTAAAAAA                                                       >  1:1025515/1‑128
                                                                           TTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑TAAAAATAAAAGTAATATTTTTATAAACCAAA‑AA‑TATATCAAAAAAATT‑AAAAAAAA                                                       >  2:1607140/1‑128
                                                                           TTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑TAAAAAAAAAAGTAACATTTTGATAAACCAAA‑AC‑TTAAAAAAAAAAATT‑AAAAAAAA                                                       >  1:3480804/1‑128
                                                                           TTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAAGTAAATTTTGGATACCACAAA‑AA‑TATAACAAAAAAATA‑AAAAAAAAa                                                      >  1:4405320/1‑127
                                                                               TATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAATGTAATATTTGGATCACCCAAACAT‑TATA‑AAAAAAAATT‑AAAAAAAATATTT                                                  >  2:1731641/1‑128
                                                                                ATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTGT‑TAAAAAT‑AAATTAAGATTTTGATAAACCAAA‑AC‑TTAATAAAAAAAATT‑AAAAAAAGTATTTT                                                 >  1:2621946/1‑128
                                                                                  ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTT‑TAAAAAAAAAATTAAGATTTGGAAAAACCAAA‑AA‑TATAAAAAAAAAATT‑AAAAAAAAAATTTTA                                                >  2:4477949/1‑128
                                                                                   CTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAAAAAAAGTAATATTTGGATAAACAAAA‑AA‑TATATAAAAAAAATT‑AAAAAAAAAAATTTAtt                                              >  2:1419489/1‑126
                                                                                    TTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAATTAATATTTTGATAAAACAAA‑AA‑AATATAAAAAAAAAT‑AAAAAAAATAGTTTTGTT                                             >  1:1281069/1‑128
                                                                                    TTATAAACATTACAACGCTTTAAAAGTGTTTTTTTTAGGGT‑‑‑TTT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTT                                             <  1:3872993/128‑1
                                                                                     ataaAACATAACAAC‑CTTTCAAAGTGTATTTTTTAGGCTTG‑‑TT‑TTTATTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTG                                            <  1:4055109/124‑1
                                                                                      ATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAATTAATATTTGGATAAACCAAA‑AA‑TAATTAAAAAAAATT‑AAAAAAAAAATTTTATTTGA                                           >  2:2138154/1‑128
                                                                                      ATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAAGTAAGATTTTGATAAACCAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTta                                           >  2:2217038/1‑126
                                                                                                CAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGGATCAAACAAA‑AA‑TATAAAAAAAAAATT‑AAAAAAAATATTTTATTTTATTTTAAAA                                   >  2:4627891/1‑128
                                                                                                CAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑TTT‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAATATTTGGATAAACCAAA‑CA‑ATTATCAAAAAAATT‑AAAAAAAAAAGTTTATTTTAGTTTCAAA                                   >  2:1031770/1‑128
                                                                                                  atttTTTTAAAGTTTATTTTTTAGG‑TT‑‑TTT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTG                               <  2:3965447/124‑1
                                                                                                  ACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGTTCAACCAAA‑AA‑ATTATAAAAAAAATT‑AAAAAAAATATTTTATTTTAGTTaaaaaaat                                >  2:2667745/1‑120
                                                                                                               GTATTTTTTAGGCTTG‑‑TT‑TTTTTTTTTTTTTTTTGTAAAAAAAAAAGTAAGATTTGGATCAACCAAA‑AC‑TATATAAAAAAAATT‑AAAAAAAATAATTTATTTGTGTTTCAAAAGTTCATATATAGTAC                   >  2:379500/1‑128
                                                                                                                      tttttttttttgT‑TTTTTTTTTTTTTTTTTTATATATAAAAGTAAGATTTGGATCAACAAAA‑AC‑TATATCAAAAAATTT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG              <  1:1857784/116‑1
                                                                                                                       TAGGCTTG‑‑TT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAA‑AC‑TATATAAAAAAAATT‑AAAAAAAATAGTTTATTTGATTTTAAAATATGCATATATAGTACAAAGGAAT           >  2:69263/1‑128
                                                                                                                           ttttttgT‑TTTTTTTTTTTTTTTTGTAAAAATAATAGTAAGATTTGGATCAAACAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTT         <  1:3588722/121‑1
                                                                                                                           tttttTTT‑TTTTTTTTTTTTTTTTGTAAAAATAAATGTATGATTTGGATCAAACTAA‑AC‑TATATCAAAAAAATT‑AAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTT         <  1:256665/123‑1
                                                                                                                           tttttTTT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTGGATAAAACAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTT         <  1:1644269/123‑1
                                                                                                                           tgtttTTT‑TTTTTTTTTTTTTTTTGTAAAAATTATTGTATGATTTTGATCAACAAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTT         <  1:923983/123‑1
                                                                                                                           ggtttTTT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTT         <  1:3611662/123‑1
                                                                                                                            ttttTTT‑TTTTTTTTTTTTTTTTGTAATAATAAAAGTAAGATTTGGATAAACCAAA‑AC‑TATATAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTA        <  2:3234744/124‑1
                                                                                                                            ttttTTT‑TTTTTTTTTTTTTTTTGTAAAAATTAAAGTAATATTTGGATCAACAAAA‑AA‑TATATAAAAAAAATTAAAAAAAAATAGTTTATTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTT         <  1:2012202/124‑1
                                                                                                                            tcttgTT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTA        <  1:4294879/123‑1
                                                                                                                             tttTTT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGTATCAAACAAA‑AC‑TATATAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAT       <  2:1270238/125‑1
                                                                                                                             gatTTT‑TTTTTTTTTTTTTTTTGTAAAAATAAATGTAATATTTTTATAAAACAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAT       <  1:3961759/125‑1
                                                                                                                              ttTTT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATG      <  2:586938/126‑1
                                                                                                                               ttgT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGA     <  1:3777993/125‑1
                                                                                                                                TTT‑TTTTTTTTTTTTTTTTGTAAAAATATAAGTAAGATTTGTATCTACAAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAT    <  2:1909347/128‑1
                                                                                                                                  T‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAATATTTTGATTAAAAAAA‑TA‑TATATAAAAAAAATT‑ATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  <  1:2766871/128‑1
                                                                                                                                  T‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAGATTTGGATCAACCAAA‑AC‑TTTTTAAAAAAAATT‑AAAAAAAATATTTTATTTGATTTTAAAATATGCATATATATTACAAAGGAATTTTTTATAt  >  2:4079351/1‑127
                                                                                                                                  T‑TTTTTTTTTTTTTTTTGTAAAATTAATAGTAAGATTTTGATCAACAATA‑AA‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  <  1:1579613/128‑1
                                                                                                                                  T‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTTGATCAAACAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  <  2:2545891/128‑1
                                                                                                                               |||||                                                                                                                                  
TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP016816/203769‑203895
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAA‑AC‑TATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  >  CP016816/203896‑204022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.