Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8951.T57.4% inf / inf 679intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (170/118);  new base T (307/81);  total (479/200)
Fisher's exact test for biased strand distribution p-value = 2.32e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 817 total aligned reads displayed.

TTTTAATTTTTTTTATAAAAAAAAATAAAA‑ATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATA  >  CP016816/203767‑204021
                                                                                                                                       |                                                                                                                                           
    aaTTTTTTTTATAAAAAAAAATAAAA‑ATTTTTAATTTAAAGACTTTTGTAAAATATCCTATTTTTTATGCTTTTTATTATACTTTTAAAAATTACAACGCTTTCAAAGTTTATTTTT‑TA‑T‑G‑C‑TTG‑‑‑‑‑ttt                                                                                                                                      <  1:1729049/128‑1 (MQ=255)
      ttttttttttTAAAAAAATAAAAA‑ATTTTTCATTTTAAGGCATTTGTAAATAAGCCTATTTTTTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑tttt‑‑t                                                                                                                                  <  1:2441302/128‑1 (MQ=255)
      ttttttttATAAAAAAAAATAAAA‑ATTTTTAATTTAAAGCCATTTTTAAAAAAGCCTATGTTATAGGCTTTTTATTATACTTATAAACATTACAACGCTTTCAAATTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑tttt‑‑t                                                                                                                                  <  2:107882/128‑1 (MQ=255)
      ttttttttAT‑AAAAAAAATTAAA‑ATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTCCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑tttt‑‑tt                                                                                                                                 >  2:2161825/1‑128 (MQ=255)
         tttttATAAAAAAAAATAAAA‑ATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑tttt‑‑tttt                                                                                                                               >  2:3893607/1‑128 (MQ=255)
         tttttAT‑AAAAAAAATTAAA‑ATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑tttt‑‑ttttt                                                                                                                              >  2:1004947/1‑128 (MQ=255)
            ttATAAAAAAAAATAAAA‑ATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑tttt‑‑ttttttt                                                                                                                            >  1:3592097/1‑128 (MQ=255)
              ataAAAAAAAATAAAA‑ATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTATAGGCTTTTTATTATAATTATCAACATTAAAACCCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑tttt‑‑ttttttt‑tt                                                                                                                         <  2:4074757/128‑1 (MQ=255)
               taAAAAAAAATAAAA‑ATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑tttt‑‑ttttttt‑tt‑t                                                                                                                       >  1:4334337/1‑128 (MQ=255)
                taaaaaataTAAAATATTTTTCTATTAATTGAATTTGTATATAAGTCTTTTTTTTAGGGTTTTTTTTAAATTTATGAACTATATAAAGTTTTAAAAGGTTTTTTTT‑TT‑G‑G‑G‑TTG‑‑‑‑‑tttt‑‑ttttttt‑tt‑t                                                                                                                       <  1:2575912/127‑1 (MQ=255)
                 aaaaaaaaTAAAA‑ATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑tttt‑‑ttttttt‑tt‑ttt                                                                                                                     >  1:2325526/1‑128 (MQ=255)
                  aaaaaaaTAAAA‑ATTTTTCATTTAAAGCAATTTGTAAAAACCCCTATGTTATAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTTTATTTTT‑TC‑G‑G‑C‑TTG‑‑‑‑‑tttt‑‑ttttttt‑tt‑tgta                                                                                                                    <  1:3655677/128‑4 (MQ=255)
                    aaaaataaaa‑atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑tttt‑‑ttttttt‑tt‑tttttt                                                                                                                  >  2:1857784/1‑125 (MQ=255)
                    aaaaataaaa‑atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑a                                                                                                                >  2:3859313/1‑128 (MQ=255)
                      aatttaaa‑atTTTTAATTTTAATATATTTTTAAAAAATCATATTTTTTTTTTTTTTTTTTTTAATTTTCAAAATTAAAACGCTTTTAAATTTTTTTTTT‑TT‑T‑G‑C‑TTT‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑a‑aa                                                                                                             <  1:2087214/123‑1 (MQ=255)
                      aaataaaa‑atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATTTTCTAGGCTTTTTATTATACTTATCAACATTACAACGATTTCAAAGTGTATTTTT‑TA‑G‑T‑C‑TTG‑‑‑‑‑tttt‑‑tttattt‑ta‑ttttttaa                                                                                                                >  2:275084/1‑123 (MQ=255)
                         taaaa‑atTTTTATTTTAAAGCCATTTTTAAAAACCCAAATTTTATGGTTTTTTTATTAAAATTAAAAAAATAAAACCGTTTTAAATGTTTTTTTTTATG‑G‑G‑T‑TTT‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑a‑aaa‑a                                                                                                          <  1:582715/128‑1 (MQ=255)
                          taaa‑atTTTTTATTTAAATGCATTTTTAAAAAATCCATTTTTATATGTTTTTTTTTATAATTAAAAAAATTACAACGCTTTTAAATTGTATTTTT‑TA‑G‑G‑CTTTT‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑At                                                                                                         <  1:821991/127‑1 (MQ=255)
                           aaa‑atTTTTAATTTTAATCCAATTTTTAAAAATCATATGTTATATGGTTTTTTTTATAATTATAAAAAATAAAACGCTTTCAAATTGTATTTTT‑TA‑G‑G‑G‑TTG‑‑‑‑‑‑TTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATaaa                                                                                                      <  2:3496639/128‑1 (MQ=255)
                             a‑atTTTTCATTTAAATCCATTTTTAAAAAATCCTATTTTCTACGCTTTTTATTATAATTATCAAAATTACAACCCTTTAAAATGTTTTTTTT‑TA‑G‑GTT‑TTT‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATaaa                                                                                                      <  1:311748/128‑1 (MQ=255)
                               atattataTTTTAATCCATTTTTAAAAAAGCCTATTTTGTAGGCTTTTTTTTTTAATTATCAACATTTAAACGCTTTCAAATTGTTTTTTT‑TT‑T‑G‑C‑TTGTT‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATaaa                                                                                                      <  1:4241726/121‑1 (MQ=255)
                               atTTTTTATTTAAATTCATTTTTAAAAAATCCTATTTTCTAGGCTTTTTTTTATATTTTTAAACATTAAAACGCTTTAAAAGTGTATTTTT‑TA‑T‑G‑C‑GTT‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAg                                                                                                    <  2:2992424/128‑1 (MQ=255)
                               atTTTTAAATTAAACTCATTTTTTAAAAATCCTATTTTTTATGTTTTTTTTTTAAATTATAAAAAATTAAACGCTTTTAAATGGTATTTTT‑TT‑G‑G‑G‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATaaaa                                                                                                     <  1:3234533/128‑1 (MQ=255)
                                tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑TAA‑ATAAAAg                                                                                                    >  2:4275523/1‑128 (MQ=255)
                                 ttttTATTTAAATACATTTTTAAAAAATCCTTTTTTTTATGTTTTTTTTTTTAATTTTAAACATTTAAAATCTTTAAAATTTTATTTTT‑TT‑T‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGt                                                                                                   <  2:1772487/128‑1 (MQ=255)
                                 ttttTATTTAAAGATATTTTTTAAAAATTCTTTGTTTTATTTTTTTTTTTTTATTTTTAAAAAATTAAACTATTTTAAATTGTTTTTTT‑TAGG‑G‑T‑TTT‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGt                                                                                                   <  1:907478/128‑1 (MQ=255)
                                 ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTTTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTT‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑aaa‑aaaaatt                                                                                                    >  1:2647321/1‑126 (MQ=255)
                                 ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑a‑aaa‑aaaaaaatt                                                                                                  >  2:114784/1‑125 (MQ=255)
                                 ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTATAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAATGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATaaaatt                                                                                                   >  2:2548862/1‑126 (MQ=255)
                                  tttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTT‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATaaaatt                                                                                                   >  1:1159958/1‑126 (MQ=255)
                                    ttaTTTAAAGCAATTTTTAAAAAATCTTATTTTATAGGCTTTTTATTATATTTATAAACATTAAAACCTTTTAAATTTTTTTTTTT‑TT‑G‑G‑C‑TTGTTT‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTa                                                                                                  <  1:1400084/126‑1 (MQ=255)
                                       tttAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTT‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAATTAatat                                                                                              >  2:4122028/1‑128 (MQ=255)
                                         taattccATTTTTTAAAAATCCTATTTTTAAGGCTTTTTATTTTAATTATCAAAATTTAAACTCTTTAAAATTGTATTTTT‑TA‑T‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTg                                                                                           <  2:353957/123‑1 (MQ=255)
                                         tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑AAAAAATTAAGAtttt                                                                                           >  2:3588722/1‑127 (MQ=255)
                                         tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTg                                                                                           >  2:3777993/1‑128 (MQ=255)
                                           aaGCCATTTGTAAAAAAGCCTATGTTGTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATaaaatatatatttgta                                                                                         >  2:2086404/1‑116 (MQ=255)
                                             gCCAATTGTAAAAAATCTTATTTTTTTTTGTTTTTATTAATATTATCAACATTAAAACGCTTTAAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCa                                                                                      <  1:1591167/128‑1 (MQ=255)
                                             accATTTGTAAAAAACCATATTTTCATATTATTTTATTAAACTTATAAAAATAAAAACTCTTTCTAATTGTTTTTTT‑TT‑T‑T‑C‑TTT‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCa                                                                                      <  1:1101355/127‑1 (MQ=255)
                                                    gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTGTCAAAGTGTATTTTT‑TA‑G‑T‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATATAATTAAAAATTGTATAAACaaaa                                                                                >  2:419457/1‑128 (MQ=255)
                                                     tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑TTAATATTAAGTTTTgttataacctaaa                                                                               >  2:2502838/1‑116 (MQ=255)
                                                      aaaaaataatatgttttatgtttTTTATTATTCTTATAAAAATTAAAAATTTTTAAAATTTTATTTTT‑TA‑T‑T‑G‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAAc                                                                              <  2:1272094/119‑1 (MQ=255)
                                                      aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTTT‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAATATTAATATTTTGATAAAACaaa                                                                                >  2:2620939/1‑128 (MQ=255)
                                                      aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑T‑AAA‑TTAAAATTAAGATTTGGATTAACCAAAAc                                                                              >  2:198570/1‑128 (MQ=255)
                                                      aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATAAACCAAAAc                                                                              >  2:3446903/1‑128 (MQ=255)
                                                        aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑T‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑ATAAA‑AAAAAATTAAGATTTGGATAAACAaaaaaaa                                                                            >  1:1227342/1‑125 (MQ=255)
                                                            gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑T‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑AAAAAAATAAAAATTGGATACACCAAAACTaaata                                                                        >  2:282830/1‑127 (MQ=255)
                                                             gttttgttgtATGTTTTTTATTTTAATTTTTATGATTTCATCTGTTTTAAATTGTATTTTT‑TT‑T‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCa                                                                       <  2:4448785/124‑1 (MQ=255)
                                                               tatttttttttttttttATTATATTTTACAAAATTAAAACTATTTAAAATTTTATTTTT‑TA‑GTT‑T‑TTT‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                     <  1:3697979/116‑1 (MQ=255)
                                                                aTGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAATTAAGATTTGGATAAACCaaaaaaattaaaaaa                                                                    >  2:4021113/1‑117 (MQ=255)
                                                                 tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAATTAAAAATTGGATAAACCaaaaaatttacaaaaa                                                                   >  1:4446638/1‑116 (MQ=255)
                                                                  aacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TT‑‑T‑‑A‑AAA‑ATAAAATTAAGATTTGTTTCAACCAAAACTAAATaaaaaaaaat                                                               >  1:1008672/5‑126 (MQ=255)
                                                                     atatgatttttATTTAACTTATAAAAATTACAAAGTTTTCTAATTGTATTTTT‑TT‑T‑G‑T‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAtt                                                               <  2:1430293/122‑1 (MQ=255)
                                                                      tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTT‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAAGTAATTTTTTTATAAAGCAAAATAATATCaaaaactta                                                               >  1:3455237/1‑124 (MQ=255)
                                                                       atgttttttatttttaTTATAAAAAATAAAACTCATTTAAATTTTTTTTTT‑TT‑T‑G‑G‑ATT‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaa‑a                                                           <  1:4127175/124‑1 (MQ=255)
                                                                       aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAAGTATGATTTGTTTGAACCAAAAATAATTCAAAAAAATaaa                                                             >  2:4335134/1‑128 (MQ=255)
                                                                        ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTTT‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAAATAAAAATTTGATAAACCAAAAATATAAAAAAAAAATTa                                                              >  2:3991936/1‑128 (MQ=255)
                                                                           tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTT‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATTAAATTAAAATTTTGATAAACAAAAAATATAAAAAAAAAATTaa‑aaa                                                         >  2:4558785/1‑128 (MQ=255)
                                                                             tttATTTTAATTATTAAAATTACAACGCTTTAAAATTGTATTTTT‑TA‑T‑G‑T‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaa‑aaaaaa                                                      <  2:3830643/128‑1 (MQ=255)
                                                                             tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAATTAATTTTTTGTTAAACAAAAAATATATAAAAAAAATTaa‑aaaaaa                                                      >  2:3074840/1‑128 (MQ=255)
                                                                                 ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑AAAAAATTAAATTTTTTAAAAACAAAAAATataaaaaaaaaataaa‑aaaaaaatat                                                  >  2:756993/1‑124 (MQ=255)
                                                                                 ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAATTAATATTTGGATAAACCAAAACTATATAAAAAAAATTTA‑AAAAAAtata                                                  >  1:1337538/1‑126 (MQ=255)
                                                                                 ttaaACTTATCAACATTACAACGCTTTCAAAGTGTATTTAT‑TA‑G‑G‑A‑TTG‑‑‑‑‑TTTT‑‑TTTTTTTATT‑TTTTT‑‑A‑AAA‑AAAAAAAAAAAATTTTAATAAAAAAAAAAAATATAAaaaaaattaa‑aaaaattatt                                                  >  2:2933870/1‑126 (MQ=255)
                                                                                  tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAATATTTTGATAAACCAAAACTATATCAAAAAAATTAA‑AAAAAAtagtt                                                 >  2:929575/1‑128 (MQ=255)
                                                                                   ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTT‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑AAAAAATTAATATTTGTTAAAACAAAAAAAATTAAAAAAAAAAAAA‑AAAAAAtatta                                                 >  1:716822/1‑125 (MQ=255)
                                                                                    tatttATAAAAATTAAAACTATTTAAAATTGTATTTTT‑TT‑G‑T‑T‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAAtagttta                                               <  2:3691573/125‑1 (MQ=255)
                                                                                     tattATCTACATTAAATAGCTTTATAATTGTATTTTT‑TT‑T‑G‑T‑TTT‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑TAA‑TTATAAGTAAGATTTGGATCAACCAAAACTATATCATAATAATTAA‑AAAAAAtagtttagt                                             <  1:533931/126‑1 (MQ=255)
                                                                                      cTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTT‑T‑‑A‑AAA‑AAAAAAATAAATATTTGTTAAAACAAAAATAAATAAAAAAAATTAA‑AAAAAAtaattttatat                                           >  2:4392298/1‑123 (MQ=255)
                                                                                      attATCAAAATTAAAACGCTTTTAAATTTTTTTTTT‑TT‑G‑G‑G‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAAtagtttagtt                                            <  1:4312426/127‑1 (MQ=255)
                                                                                      attATAAACATTACAAAGCTTTAATAGTTTATTTTT‑TA‑G‑G‑T‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAAtagtttagtt                                            <  2:493060/127‑1 (MQ=255)
                                                                                       ttaaaaaCATTACAACCCTTTAAAAGTGTTTTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAAtagtttagtt                                            <  1:3893607/123‑1 (MQ=255)
                                                                                        tATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAAGTAATATTTTGAACAACCAAAACTAAATAAAAAAAATTaa‑aaaaaaatttttatttgt                                          >  1:3536376/1‑116 (MQ=255)
                                                                                        tATCAAAATTACAACGCTTTAAAATGGTATTTTT‑TT‑G‑G‑C‑GTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTg                                           <  1:4172074/128‑1 (MQ=255)
                                                                                        ataaaaCATAACAAC‑CTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑TTTTTATTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTg                                           <  1:4055109/124‑1 (MQ=255)
                                                                                               aTTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTT‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑AAAAAAATAAAATTTGTTTAAACAAAAAAATTATCAAAAAAATTAA‑AAAAAAAATTTTAATTTAtttta                                     >  1:1495940/1‑127 (MQ=255)
                                                                                               aTTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTA‑‑A‑AAATATAAAAGTAAGTTTTGATTAAACCATATAAATATAAAAAATATTAATAATAAATA‑TTTATTTTAGttaga                                    >  2:625338/1‑125 (MQ=255)
                                                                                               aTTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑‑TTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑AAAAAATTAATATTTTGTTAAACCAAAACTATTAAAAAAAAATTAA‑AAAAAATAATTTATTTGAGTTTCaaa                                  >  1:1801111/1‑128 (MQ=255)
                                                                                                  aCAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTTTTTTTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑AAAAAATTAATATTTTGATAAACCAAAAAATTAAAAAAAAAATTAA‑AAAAAAAattttattttatttta                                     >  2:135830/1‑127 (MQ=255)
                                                                                                   cAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTTT‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAATTAATATTTGGATCAAACAAAAATATAAAAAAAAAATTAA‑AAAAAATATTTTATTTTATTTTaaaa                                  >  2:4627891/1‑128 (MQ=255)
                                                                                                   cAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAAATAAGATTTTTGTCAAACAAAAGTATTTAAAAAAAATTAA‑AATAATTATTTTATTTGAtttaaaaaaa                                >  2:550860/1‑121 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTT‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAATTAATATTTTGTTAAACAAAAAATAATTAAAAAAAATTAA‑AAAAAATATTTTATTTTTGTTTAAAAtgt                               >  1:3983774/1‑126 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAATTAAAATTTGGATAAACCAAAACTATAAAAAAAAAATTAA‑AAAAAATATTTTATTTTATTTTaaaaaata                              >  2:3952897/1‑124 (MQ=255)
                                                                                                       gCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTTTT‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑AAAAAATTAATATTTGTAAAAACAAAAACAATAAAAAAAAAATTAA‑AAAAAAAATTTTAATTTATTTTAAAATca                               >  2:690252/1‑127 (MQ=255)
                                                                                                       gCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTTT‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAATTAATATTTGGTTCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATATTTTATTTTAGattacaaaatg                              >  2:1214524/1‑120 (MQ=255)
                                                                                                       gCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATAAACCAAAACTATATAAAAAAAATTAA‑AAAAAATAATTTATTTGAGTTTaaaaagggaa                            >  1:200491/1‑122 (MQ=255)
                                                                                                        attttatattttATTTTT‑TT‑T‑G‑T‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAATATTTGGATCAACCAAAACTATATCAAAAAAATTAT‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCata                          <  1:2236545/117‑1 (MQ=255)
                                                                                                          ttCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTTT‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAAGTAAGATTTTGATAAACCAAAAATATATAAAAAAAATTAA‑AAAAAATATTTTTATTTATTTTCAAATATTCat                           >  1:4578861/1‑128 (MQ=255)
                                                                                                          ttCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTTT‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAATATTTGGATAAACCAAAACTATATCAAAAAAATTAA‑AAAAAATATTTTTTTTTAGTTAAAAAAATGCat                           >  2:3620939/1‑128 (MQ=255)
                                                                                                          ttCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGTT‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAAGTAATTTTTGGGTCAACCAAAACTATAAAAAAAAAATTAA‑AAAAAATAGTTTATTTGATTTTCaaaagagcata                          >  1:3839999/1‑120 (MQ=255)
                                                                                                          ttCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑T‑AAA‑AAAAAAGAAAGATTTTGATCAACCAAAAATAATTCTAAAAAATTAA‑AAAAAAAAGTTTATTTGTATTAAAAATCtttatta                         >  1:2942343/1‑122 (MQ=255)
                                                                                                          ttCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAAGTAAGATTTGGAAAAACCAAAAAAAAATAAAAAAAATTAA‑AAAAAATAGTTTTTTTTATTTTAAAATATGAatat                         >  1:3922983/1‑128 (MQ=255)
                                                                                                            taaaGTTTTTTTTT‑TA‑T‑G‑A‑TT‑‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                     <  2:1557785/127‑1 (MQ=255)
                                                                                                             aaaGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTTTAA‑AAA‑AAAAAAATAAGTTTTGGAAAAACCAAAAATATTTAAAAAAATTAAA‑AAAAAATATTTTATTTTTTTTTAAAATCTggaataat                       >  2:3166039/1‑121 (MQ=255)
                                                                                                              aaGTGTATTTTT‑TT‑T‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TTATTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                     <  2:2401155/128‑1 (MQ=255)
                                                                                                                 gtgtttatt‑tA‑G‑G‑C‑GTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTCAGATTTTGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAc                  <  1:471492/121‑1 (MQ=255)
                                                                                                                  gtATTTTT‑TA‑G‑G‑C‑TTGCT‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAATTAATATTTTGATCAACCAAAACAATATAAAAAAAATTAA‑AAAAAATATTTTATTTTATTTTAAAATATGAAAATATAGTaa                  >  2:331111/1‑127 (MQ=255)
                                                                                                                   tATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAATTAATATTTGGATCAACCAAAACTTTATAAAAAAAATTAA‑AAAAAAAATTTTAGTTGTGTTTCAAATCTGCatataaataaaaaa               >  2:2671452/1‑119 (MQ=255)
                                                                                                                    aTTTTT‑TA‑G‑G‑C‑TTGTT‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑AAAAAAGTAAGATTTGGGTCAACCCAAAAAATATAAAAAAAATTAA‑AAAAAATTTTTTAATTGAGTTTCAAAAATGAATTAATAGTaaaa                >  2:1486238/1‑128 (MQ=255)
                                                                                                                       ttt‑tA‑G‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGaa           >  2:1651208/1‑128 (MQ=255)
                                                                                                                       ttt‑tA‑G‑G‑C‑TTG‑‑‑‑‑‑TTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAAATATATAAAAAAAATTAA‑AAAAAATAGTTTATTTTAGTTTCAAATCTTCATATATAGTAAAAATGAAt          >  2:84214/1‑128 (MQ=255)
                                                                                                                           tA‑G‑G‑C‑TTGT‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTTT‑‑A‑AAA‑ATAAAATTAAGTTTTGGATAAACCAAAAATTTATAAAAAAAATTAA‑AAAAAAAATTTTATTTTTTTTTAAAATATTCATATTTATTAAAAATGAAtt         >  2:2244032/1‑128 (MQ=255)
                                                                                                                                       |                                                                                                                                           
TTTTAATTTTTTTTATAAAAAAAAATAAAA‑ATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTT‑TA‑G‑G‑C‑TTG‑‑‑‑‑TTTT‑‑TTTTTTT‑TT‑TTTGT‑‑A‑AAA‑ATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATA  >  CP016816/203767‑204021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑