New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486160 (0.080)311 (0.150) 82/252 27.0 64.3% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 186 (0.090)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 409 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAA  >  CP016816/202359‑202609
                                                                                                                                |                                                                                                                            
attttttgtAAATAATAGAGTTAATGTTAATTAAAATTCCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                              <  1:1068333/122‑1 (MQ=255)
aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAAAAACATAAACTTAATAATTCATATAATCTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                              <  2:4301270/128‑1 (MQ=255)
          aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATACTATATATATATTTTATTAATTTTTTATATTCACAAAT‑AAAAAAAAAACAATACCAttaaaaattaaa                                                                                                                    >  2:92315/1‑118 (MQ=255)
          aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCAttaaaaattaaa                                                                                                                    >  2:365328/1‑118 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAATCTTAATAATTCTTATTATGTAGAACCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACCttaaaaatttaaa                                                                                                                   >  1:2921265/1‑117 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑Ttaaa‑aattaaaa                                                                                                                >  2:3878536/1‑128 (MQ=255)
             aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑AAtaaa‑aaataaaaaa                                                                                                              >  2:4222208/1‑128 (MQ=255)
               taatgttttgtttaattaaAATTAAAAAAAATTTATTATTATTTTAATGTATTTCACTGTTTTATATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCCTTT‑‑AA‑AATTaaaaaaaa                                                                                                            <  1:3528670/117‑1 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAAACCCCTT‑‑‑AA‑AAATaaaaaaaa                                                                                                            >  1:4619350/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑‑TAAA‑AAATaaaaaaaaa                                                                                                           >  1:454185/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCCAT‑‑‑AA‑AAATaaaaaaaaa                                                                                                           >  1:2305137/1‑128 (MQ=255)
                 aagTTAAGGTTAATTAAAAAACCAAAAAAAAAAAAAATAATAAAATTTAACTCCTCGTTTTCTATTTTTTTATTTTTTTATCTTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AAATaaaaaaaaaa                                                                                                          <  2:4259400/127‑1 (MQ=255)
                  agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaa                                                                                                         >  1:3670262/1‑128 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaa                                                                                                        >  1:3503286/1‑128 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACCTT‑‑‑AA‑AAATaaaaaaaaaaaaa                                                                                                       >  2:3453644/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACCAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaa                                                                                                      >  2:3507753/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAA‑AAATaaaaaaaaaaaaaa                                                                                                      >  1:3786196/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAACAAACCAAAT‑‑AA‑AAATaaaaaaaaaaaaaaa                                                                                                     >  2:4114121/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAA‑ACAAAAAAATTAAA‑AATTaaaaaaaaaaaaaa                                                                                                      >  2:2666201/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑ATAAA‑AATTaaaaaaaaaaaaaaa                                                                                                     >  1:1806747/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                     >  1:3933503/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                     >  1:3025590/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                     >  1:3468254/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                     >  1:4221164/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAAAAAAAACCATaaaaa‑aaaaaaaaaaaaaaaaa                                                                                                       >  2:2354556/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑‑TAAA‑AAATtaaaaaaaaaaaaaaa                                                                                                    >  1:1726380/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                    >  1:3568338/1‑128 (MQ=255)
                       agtttaatttaAAAACAATAAAAATAATAATTTTTATTATTTTGATACTTTTTTAATATTTTTTTTTTTTTTTAAAATAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                    <  1:4164608/125‑1 (MQ=255)
                       aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AAATaaaaaaaaaaaaaaaa                                                                                                    >  1:1014407/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                    >  1:3868150/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGAGATCAATTATTTAAAATAATAAAAATCAAAAAT‑AAAAAAAAAAACAAAACCaaaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                     >  1:2822810/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAAAACAAACAC‑‑AAAAA‑AAATtaaaaaaaaaaaaaaaa                                                                                                   >  1:540409/1‑128 (MQ=255)
                         gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTAACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                                  >  2:470120/1‑128 (MQ=255)
                         gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTTTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑‑ATAAA‑AAATaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:324255/1‑128 (MQ=255)
                         gTTAATTAAAATACCATAAAATTAAAAATTATTATAATTTATATACTCGTGATCTA‑TTTTTTATTTTTTTATCTTCAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaa                                                                                                 <  2:1446334/128‑1 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAA‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:411771/1‑128 (MQ=255)
                            tattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑ATAAA‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:303047/2‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTTAATTGAATATCATCAAAAAT‑AAAAAAAAAAAAATCAC‑‑‑ATAAA‑AAATaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:1332652/1‑127 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:3809202/1‑128 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:4026748/1‑127 (MQ=255)
                              ttaaAATAAAATAAAAATAATAATTATTATAATTTTTATAATATTTATAATTTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATTTAAAAAAAAAAAAAAAAAAAACt                                                                                             <  2:183040/128‑1 (MQ=255)
                                ttaaaaaaaTAAAATTATAAATTTTTAAAATTTATATAATAGTTATATATTTTTTTTTTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAACCCCAT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTaaa                                                                                          <  2:1914812/120‑1 (MQ=255)
                                aaaaaaACAAAAACTTAAAAATTTTTAAATATTATATACTCTTTTTATTTTTTTTTTTTTTTTTAATTTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTaaa                                                                                          <  1:3851820/128‑1 (MQ=255)
                                 aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:4352252/1‑123 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTGTTTAACTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAA‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  2:2468215/1‑128 (MQ=255)
                                      gcaaaaaattaaaaattaTTAAAATTTATATCCACGTTATATATTTTTTTATTTTTTTAAATACAAAAAA‑AAAAAAAAAACAATCCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                      <  2:2402113/124‑1 (MQ=255)
                                      caaTAAAATTAAAAATTATTATAATTTTTATTATTGTTTTTTATTTTTTTATTTGTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                     <  1:3745850/126‑1 (MQ=255)
                                      acATAAAATTAATAATTCTTATAATTTTTATACTATTTTTATTTTTTTTTATTTTTTTTTCTTAAAAAAT‑AAAAAAAAAACAATCTCATT‑‑‑AA‑AAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                 <  1:4087675/127‑1 (MQ=255)
                                      aaaaaaaaattataatTATTATAATTTTTATACCCCTTATATATTTTATTATTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                      <  1:2404818/117‑1 (MQ=255)
                                      aaaaaaaaTTAAAAATTTTTATAATTTTTATCATATTTTTATATTTTTTTTTTTTTTTTTATTCAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                      <  1:1654674/124‑1 (MQ=255)
                                       cATAAACTTAATAAGTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTACAAATTAAAAAAAAAAAAAACACAAAAAAACtcacaaa                                                                                       >  1:2349277/1‑122 (MQ=255)
                                       cATAAAATTAATAATTTTTATAAATTATAAAAACTTTTTATATTTTTTTTATTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                    <  2:3952403/128‑1 (MQ=255)
                                           aaattAATAAATCATATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                <  2:3548889/125‑1 (MQ=255)
                                            aataaataatTCTTATAATTTATATACTCGTTATCTATTTTTTTTTTTTTTTATCTTAAAAAAT‑AAAAAAAAAACAATACCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAtt                                                                             <  2:1712125/124‑1 (MQ=255)
                                            aCTTTATAAATATTAAAATGAATATACTCGTTATCTATTTTTTTATTTTTTTATATTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                               <  2:2091838/128‑1 (MQ=255)
                                                aaaaatTCTTAAAATTTACAACCTCTTTATCTTTTTTTTTATTTTTTTAACTTAACAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑‑‑‑TAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                      <  2:2507785/125‑1 (MQ=255)
                                                 ttaatTCTTTTAAATTATATACTCGTTATATATATTTTTATTTTTTTATTTTAACAAAT‑AAAAAAAAAAAAATACCCTTT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                          <  2:1497813/127‑1 (MQ=255)
                                                 ataaataatataATTTAGATCTTATTTATATATTTTTTTAATTTTTTAAAATCAAAAAA‑AAAAAAAAAAAAAATCCC‑CTTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                           <  2:3782344/120‑1 (MQ=255)
                                                   aatTATTAAAATTTACATACTCGTTAAATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCttca                                                                       <  2:4467436/128‑3 (MQ=255)
                                                    aatattATAATTTATATCCTCGTTTTTTATTTTTTTATTTTTTTATCATCACAAAA‑AAAAAAAAAAAAAACCCCTTAAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                         <  2:4195977/124‑1 (MQ=255)
                                                     tttatataATTTATATACTCGTTATCTTATTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                    <  2:4139324/124‑1 (MQ=255)
                                                              tGTATATCCACGTTATCTATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                             <  2:4363234/128‑1 (MQ=255)
                                                                 ttaTCCTCGTGTTATTTTTTTTTATTTTTTTAAATTAACAAAA‑AAAAAAAAAAAAAAACCC‑ATAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                           <  2:579645/126‑1 (MQ=255)
                                                                   ctCCTCTTTATATAATTTTTTAATTTTTTAATTTAAAAAAT‑AAAAAAAAAACAATCCCC‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                         <  2:1318964/127‑1 (MQ=255)
                                                                    accccgtttaatATTTTTTAATTTGTTAAAATAAAAAAAA‑AAAAAAAAAAAAACCCCC‑‑‑AAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                      <  2:1555509/117‑1 (MQ=255)
                                                                     ctctttttttatttttttaATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                      <  1:3625606/116‑1 (MQ=255)
                                                                     cgtcggtttatttttttttATTTGTTTATATTAACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                      <  1:581766/116‑1 (MQ=255)
                                                                     atattgataatATTTTTTTATATTTTATTTTTAAAAAAA‑AAAAAAAAAAAAAAACCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                        <  2:1154366/118‑1 (MQ=255)
                                                                       tctttatatATTTTTTTAATTTTTTATTATAAAAAAA‑AAAAAAAAAAAAATACCC‑‑ATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                    <  1:210103/120‑1 (MQ=255)
                                                                       cgtttatatATTTTTTTATATTTATATCTAAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                                   <  1:983545/120‑1 (MQ=255)
                                                                       atttttaatatttttttattttttTAAATTAAAAAAA‑AAAAAAAAAAAAAATCCCATTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                      <  2:1588635/120‑1 (MQ=255)
                                                                        tttttatatttttttttttttttTATTTTAAAAAAT‑AAAAAAAAAA‑AATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                 <  2:1627652/119‑1 (MQ=255)
                                                                         tttatatatttttttattttttTAAATAAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                  <  2:3338378/122‑1 (MQ=255)
                                                                            aTCAATTTTTTTATTTTTTTAACTTCAAAAAT‑AAAAAAAAAAAAAAACCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                 <  2:4020847/128‑1 (MQ=255)
                                                                             ttattttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAAATACCCTTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                <  2:1234699/124‑1 (MQ=255)
                                                                               tatttttttattttttTATATTAACAAAT‑AAAAAAAAAAAAATACCATT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                          <  2:519172/128‑1 (MQ=255)
                                                                               attttttttATTT‑TTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                          <  2:81244/126‑1 (MQ=255)
                                                                               aaTTTTTTAATTTTTTTAATTACAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACattttatttt                                           <  1:3418638/127‑1 (MQ=255)
                                                                                ttttttttATTT‑TTTATATTAAAAAAA‑AAAAAAAAAAAAATTCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                         <  2:41814/127‑1 (MQ=255)
                                                                                  ttttttATTTGGTTAATAAAACAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                        <  1:4500833/128‑1 (MQ=255)
                                                                                   tttttATTTTTTAATCTTAAAAAAA‑AAAAAAAAAACAAAACACAT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                       <  1:4394086/128‑1 (MQ=255)
                                                                                   tttatATTTTTTTATAATAAAAAAA‑AAAAAAAAAAAAAAACCC‑ATAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                         <  2:1097308/128‑1 (MQ=255)
                                                                                    ttttttttttttATTTTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                       <  1:1096133/128‑1 (MQ=255)
                                                                                    ttttttttttttATATTTA‑AAAA‑AAAAAAAAAAAAAAAAACATTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                        <  2:454185/128‑1 (MQ=255)
                                                                                    ttttATTT‑TTTAAATTCAAAAAT‑AAAAAAAAAAAAAACCAC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                      <  2:2810827/128‑1 (MQ=255)
                                                                                    ttttAATAGTTTAACATAACAAAA‑AAAAAAAAAACAAAACCC‑‑ATAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACAATTTATTTTTaaaa                                      <  1:4245662/128‑1 (MQ=255)
                                                                                     tttATTTTTTTATATTCACAAA‑‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                     <  1:2645154/128‑1 (MQ=255)
                                                                                         attttttATCTTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                 <  2:3717901/124‑1 (MQ=255)
                                                                                          ttGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATATTAGATAAAATTACATATTATAAAAAATTTTATTTTTAAAATAatat                                >  2:4061521/1‑128 (MQ=255)
                                                                                             atattaattaaaaaT‑AAAAAAAAAAAAATACACTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                             <  2:2197574/117‑1 (MQ=255)
                                                                                              ttATATTAAAAAAT‑AAAAAAAAAAAAATAAC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                             <  2:257313/128‑1 (MQ=255)
                                                                                               ttaattaaaaaaa‑aaaaaaaaaaaaATAACC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                             <  2:3229023/119‑1 (MQ=255)
                                                                                               tatttaaaaaaaT‑AAAAAAAAAA‑AATAATCTATAAAA‑ATAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                            <  1:3602353/119‑1 (MQ=255)
                                                                                               tataataacaAAA‑AAAAAAAAAAAAAAACC‑‑ATTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                            <  1:1588807/121‑1 (MQ=255)
                                                                                                taaatataaaaa‑aaaaaaaaaaaaaaaaCCCATTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                             <  1:764708/120‑1 (MQ=255)
                                                                                                atattaaaaaaT‑AAAAAAAAAACAAACCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                            <  2:2010020/120‑1 (MQ=255)
                                                                                                     aaaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                      <  1:3999052/125‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaAT‑ACCATTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatt                <  2:3756999/128‑2 (MQ=255)
                                                                                                              aaaaaaaaaCAAACCCATAAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                <  2:2315194/128‑1 (MQ=255)
                                                                                                                          atacactttAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat    <  2:3607524/122‑1 (MQ=255)
                                                                                                                                |                                                                                                                            
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAA  >  CP016816/202359‑202609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.