BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	437887 =	1233 (0.580)	288 (0.160)	71/208	25.2	23.3%	intergenic (‑191/+231)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
*	?	CP016816	= 437880	881 (0.500)	288 (0.160)	71/208	25.2	23.3%	intergenic (‑184/+238)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1418 total aligned reads displayed.

TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTA  >  CP016816/437753‑438006

tGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTAAAGAGTTAATg                                                                                                                                  >  1:3028474/1‑128 (MQ=255)

tGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATg                                                                                                                                  >  1:4292757/1‑128 (MQ=255)

tGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACATCCATATTACCTATATAGTTAATg                                                                                                                                  >  2:2853601/1‑128 (MQ=255)

 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGAAAAAACCTCCATATTACCTATAGAGTTAATG‑‑a                                                                                                                               >  2:1906318/1‑128 (MQ=255)

 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑a                                                                                                                               >  1:1715228/1‑128 (MQ=255)

 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑a                                                                                                                               >  2:2722517/1‑128 (MQ=255)

  aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACATCCATATTACCTATAGAGTTAATG‑‑at                                                                                                                              >  1:118921/1‑128 (MQ=255)

    aCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atat                                                                                                                            >  1:187354/1‑128 (MQ=255)

     cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAATACCTCCATATTACCTATAGAGTTAATG‑‑atata                                                                                                                           >  1:1073874/1‑128 (MQ=255)

      ttATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatat                                                                                                                          >  1:4466327/1‑128 (MQ=255)

        aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatat                                                                                                                        >  1:4401303/1‑128 (MQ=255)

         tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatata                                                                                                                       >  2:1154424/1‑128 (MQ=255)

           tttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatata                                                                                                                     >  1:2203003/1‑128 (MQ=255)

           actacaaaaatAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatata                                                                                                                     >  2:4554702/11‑128 (MQ=255)

            ttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatat                                                                                                                    >  1:3733758/1‑128 (MQ=255)

             tGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAAATGTATTTTTAAAATAAATATATTAGGAAATGAAGCACATCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatata                                                                                                                   <  2:3231984/128‑1 (MQ=255)

              gTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatat                                                                                                                  <  2:4292757/128‑1 (MQ=255)

               tAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatttatata                                                                                                                 >  2:2934544/1‑128 (MQ=255)

                aGTTTTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatat                                                                                                                <  2:4485885/128‑1 (MQ=255)

                aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatat                                                                                                                >  2:1334496/1‑128 (MQ=255)

                     tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatata                                                                                                           >  2:1723210/1‑128 (MQ=255)

                     tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatata                                                                                                           <  2:1576901/128‑1 (MQ=255)

                       aGTTTAATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatata                                                                                                         <  1:3906147/128‑1 (MQ=255)

                        gattCATTATTAATAAATATTAGAAATAAAAAATGTATTTTTAAAATATATATTTTAGGATATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAAAG‑‑atatatatatatatatatatatat                                                                                                        <  2:915871/126‑1 (MQ=255)

                         tttCATTTTTAATAAATATTAGATATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatata                                                                                                       <  1:381768/128‑1 (MQ=255)

                         tttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGATGCAAAGCAAAAACCTCCATATTACATATATAGTTAATG‑‑atatatatatatatatatatattat                                                                                                       >  1:2148298/1‑125 (MQ=255)

                         tttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatatg                                                                                                       <  1:1971229/128‑2 (MQ=255)

                         tttCATTTTTAATAAATATTAGAAATAAAAAGTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatgcaagcgat                                                                                                       <  2:4158677/128‑10 (MQ=255)

                           tCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatttatatatatatatatatt                                                                                                     >  1:1405588/1‑127 (MQ=255)

                            cATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatattcaagc                                                                                                    >  1:365237/1‑122 (MQ=255)

                            cATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAATG‑‑atatatatatatatatatatatatatgc                                                                                                    >  1:3463148/1‑126 (MQ=255)

                                tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatgtatttatatatatatatatatgctctc                                                                                                >  1:240295/1‑122 (MQ=255)

                                tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatatgcaagcga                                                                                                >  1:67480/1‑120 (MQ=255)

                                tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATgtta                                                                                                >  1:1464840/1‑125 (MQ=255)

                                tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCaa                                                                                                >  2:3624069/1‑128 (MQ=255)

                                  taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCaatc                                                                                              >  1:2265888/1‑126 (MQ=255)

                                  taataaATAATAGAAATAAAAATTTTATTTTTAAAATAAATATTTTATTAAATTAATAAAAGCAAAAAACTCAATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatatgcaagcgatc                                                                                              <  2:2176706/128‑11 (MQ=255)

                                   aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatatatgaaagagat                                                                                             >  2:1698033/1‑119 (MQ=255)

                                     taaataTAAGAAATAAAAATTTTATTTTTAAAATAAATATTTTATGAAATGAAGCAAATAAAAAACCTCAATATAAGCTATAGAGTTATTT‑‑ATATATATATATATATATATATATATATGCAAGCGAt                                                                                           <  1:3981313/128‑1 (MQ=255)

                                           ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATAT‑T‑CAAGCGATCAGCATaa                                                                                   >  1:4122042/1‑128 (MQ=255)

                                            tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCTATCAGCATaaa                                                                                  >  2:1260237/1‑128 (MQ=255)

                                                taaaaaaaaTGTTGTTTTAAAATAAATATTTTAGTATAAGAATAAAATCAAAAAACTCAATATTAACTATAGATTTATTG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTg                                                                            <  1:2351718/125‑1 (MQ=255)

                                                  tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATTCAATCTATCAGAATAAAATgg                                                                              >  1:1557307/1‑128 (MQ=255)

                                                   aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATGATATATATATATATATATATATATATATATGCAAGCTATCATCAAAAAAtc                                                                               >  2:3450908/1‑127 (MQ=255)

                                                     aaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATGTGCTATCTATCATCATAAAAttttga                                                                           >  2:2013560/1‑123 (MQ=255)

                                                          gTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatat                                                                                                                  <  1:594228/84‑1 (MQ=255)

                                                           tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATTGTGAAATTTAGATc                                                                 >  2:3791348/1‑128 (MQ=255)

                                                           tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGAAAGAGATCAGCATAAAATGGTGAAATTTAGATc                                                                 >  2:518483/1‑128 (MQ=255)

                                                            aTTTTTAAAATATATATTTTAGGAAATGAAGCAAAGAAAAAACCTCCATATTAACTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCt                                                                <  1:2660556/128‑1 (MQ=255)

                                                            aTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATA‑‑CTAGCTATCATCATAAAATTGTGAAATATAGAt                                                                  >  2:1017194/1‑128 (MQ=255)

                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTg                                                               >  1:459035/1‑128 (MQ=255)

                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                           >  2:4619501/1‑128 (MQ=255)

                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGAAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGAAAGCGATCAGAATAAAATTGTGAAATTTAGATCTGAg                                                             >  2:3996443/1‑128 (MQ=255)

                                                                 tAAAATAAATATATTAGGAAATGACTCAAAGCAAAAACCTCCATATTACCTCTAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                             <  1:2598819/128‑1 (MQ=255)

                                                                  aaaaTATATATTTTAGGAAATGAATAAAATCAAAAACCTCAATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTg                                                          <  2:1792009/128‑1 (MQ=255)

                                                                  aaaaTAAATATTTTAGGAAATGAAGCAAATAAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTg                                                          <  2:2112458/128‑1 (MQ=255)

                                                                  aaaaTAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATGATATATATATATATATATATATATATATATGAAAGCTATCAGAATAAAATGTTGAAATTTAGAtgt                                                                >  1:3131036/1‑126 (MQ=255)

                                                                  aaaaTAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTg                                                          <  2:32935/128‑1 (MQ=255)

                                                                   aaataaatATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTgg                                                         >  2:4216027/1‑128 (MQ=255)

                                                                     ataaataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATAT‑‑‑T‑CAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTc                                                       >  2:1514354/1‑128 (MQ=255)

                                                                      taaataTTTTAGGAAAACAATCAAAGCAAAAACCTCCATATTAACTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtcg                                                          <  1:100263/128‑3 (MQ=255)

                                                                      aatatatTTTAGTATATGAAGATAACCAAAAACATATATATTAACTATATAGTTAATGATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGt                                                            <  2:3017934/125‑1 (MQ=255)

                                                                         atatTTTTTTAAATTAAGCAAACCAAAAAACTACATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCtt                                                     <  1:2927952/128‑1 (MQ=255)

                                                                         atatTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATATAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTCAAATTTAGATCTGAGTTGGTCtt                                                     >  2:2225094/1‑128 (MQ=255)

                                                                          tatTTTAGTAAAATAACAAAATCAAAAACATATATATTAACTATAGAGTTAAT‑‑‑‑‑‑TATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                  <  2:3141177/128‑1 (MQ=255)

                                                                             tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGTTGAAATTTAGATCTGAGTTGGTCTTAAAttt                                               >  2:1437998/1‑128 (MQ=255)

                                                                               tAGTAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑A‑A‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAttt                                               <  1:3286559/128‑1 (MQ=255)

                                                                                attaaaTGAATCAAATCAAAAACCTCCATATTAACTATATAGTTAAT‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTg                                              <  1:1621998/125‑1 (MQ=255)

                                                                                 ggAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGAAATCTATCAGCATAAAATTGTGAAATATATATCTGATTTGGTATTAAAtat                                               >  2:4053746/1‑126 (MQ=255)

                                                                                  gAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCACGCGATCAGCATAAAATGGTGAAATTTATATCTGAGTTGGTCTTAAATTTGTa                                            >  2:1073839/1‑128 (MQ=255)

                                                                                   aaaTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCTATCAGCATAAAATGGTCAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGtt                                         >  2:2627546/1‑128 (MQ=255)

                                                                                      tGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCTAGCGATAAGCTAATAAATGTGATATTTATATCTGAGTGTGTCTGAAATTTGTAtttttt                                      >  1:3548942/1‑128 (MQ=255)

                                                                                      tGAACCAAATCAAAAACCTCCATATTACATATAGAGATAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttttt                                      <  1:3222825/128‑1 (MQ=255)

                                                                                         atcaaaccaaaAACATCTATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                     <  1:1287639/126‑1 (MQ=255)

                                                                                          gcaatccaaaAAAATCCATATTACCTATAGAGATAA‑‑‑‑AGATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttat                                    <  1:1785591/122‑1 (MQ=255)

                                                                                          gcaaagcaaaAACCTCCATATTACCTATAGAGTTAATGATATATATATATATATATATATATATATATGCAAGCTATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttt                                        >  2:4381049/1‑128 (MQ=255)

                                                                                           caaagcaaaTACAACAAAATTAAATATAGAGTTATAG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                     <  2:746055/128‑1 (MQ=255)

                                                                                           caaagcaaaAACCTCCATATTACCTATTGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGGATGCGATCAGCATAAAATGGTGTATTTTAGATCTGAGTTGGTCTTAATTTTGTAGTTttgatt                                   >  1:2464231/1‑128 (MQ=255)

                                                                                           caaagcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttatt                                   <  2:838245/128‑1 (MQ=255)

                                                                                           caaagcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCCGCATAATATGGTGTAATTTAGATGTGAGTTGGTATTATATTTTTTGTTtttattta                                 >  1:4212812/1‑128 (MQ=255)

                                                                                             aataaaaaaCATAAATATAAACTATAGAGTTAATGATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                     <  2:3732742/124‑1 (MQ=255)

                                                                                               gcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattta                                 <  2:2779562/128‑1 (MQ=255)

                                                                                                caaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGATGGTCTTAAATTTGTAGTTTTTATTTATAGtt                            >  1:2813045/1‑128 (MQ=255)

                                                                                                caaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATGCAAGCGAACAGCATAAAATGGAGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                        >  2:2520927/1‑128 (MQ=255)

                                                                                                  aaaaCCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTCTTAAATTTGTAGTTTTTATTTATAGtt                            >  2:2294103/1‑128 (MQ=255)

                                                                                                   agaCCTCCATATTACCTATAGAGTTAATG‑‑ATATATAT‑‑‑‑‑T‑TATATATATATGTGCAGGCGATCAGCAGAAATGGGTGAAAGTTAGATCTGAGTTGGTCTTAAATTTGTAGGTTTTATTTAGAGTTgatat                       >  1:4540504/3‑127 (MQ=255)

                                                                                                     aCCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                         >  2:583944/1‑128 (MQ=255)

                                                                                                       cTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATaa                       <  2:3514524/128‑1 (MQ=255)

                                                                                                        tcaatatTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCTAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTTTAGTTTATAAAtttt                  >  1:2075915/4‑127 (MQ=255)

                                                                                                          cATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATAT‑T‑CAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAATTTTGTAGTTTTTATTTATAGTTtatatatt                    >  1:792779/1‑124 (MQ=255)

                                                                                                           atatTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGtt                   <  2:656317/128‑1 (MQ=255)

                                                                                                           atatTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGtt                   >  1:88722/1‑128 (MQ=255)

                                                                                                            tatTACTTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                  <  2:3864007/128‑1 (MQ=255)

                                                                                                              ttACCTATAGAGTTAATGATATATATATATATATATATATATATATATGCAAGCGATCATCATAAAATGTTTAAATATATATCTGAGTTTGTCTAAAATTTTTATTTTAGATTTATATGTTTTAAAGt                    >  1:3346347/1‑128 (MQ=255)

                                                                                                              ttACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTATATTTGTAGTTTTTATTTATAGTTTATAAAGAtaataa              >  2:3361423/1‑128 (MQ=255)

                                                                                                                    ataGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa          <  1:4034445/128‑1 (MQ=255)

                                                                                                                    ataGAGATAATGATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaataa              <  2:2343589/128‑1 (MQ=255)

                                                                                                                    ataGAGATAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa          <  1:47770/128‑1 (MQ=255)

                                                                                                                      agagATACTT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa          <  1:2722517/128‑1 (MQ=255)

                                                                                                                        agTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtt      <  2:2434936/128‑1 (MQ=255)

TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTA  >  CP016816/437753‑438006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.