Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4800TA33.8% 315.6 / 172.9 465intergenic (+258/‑417)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (131/173);  new base A (56/99);  total (189/276)
Fisher's exact test for biased strand distribution p-value = 1.61e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 497 total aligned reads displayed.

TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATC  >  CP016816/202353‑202597
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tagtGAAGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAt                                                                                                                          <  2:2865460/128‑1 (MQ=255)
tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAt                                                                                                                          <  1:1006288/128‑1 (MQ=255)
 agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTATTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATc                                                                                                                         >  2:3889360/1‑128 (MQ=255)
 agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATc                                                                                                                         <  1:3743515/128‑1 (MQ=255)
 agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATcc                                                                                                                        <  2:2082200/128‑1 (MQ=255)
  gttaatttATTGTAAATTATAGAGTTAAGTTAAATTAAAATACAATAAACTTAATAATTCTTATAATTTAGATCCTAGTGATATATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATcc                                                                                                                        <  2:1973352/122‑1 (MQ=255)
  gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATcc                                                                                                                        <  1:49587/128‑1 (MQ=255)
  gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATcc                                                                                                                        <  1:2525281/128‑1 (MQ=255)
   tGAAGTTTGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATccc                                                                                                                       <  1:891966/128‑1 (MQ=255)
   tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATcc                                                                                                                        <  2:601018/128‑1 (MQ=255)
    gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCCt                                                                                                                     <  2:304611/128‑1 (MQ=255)
     aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATccaca                                                                                                                     >  2:3861505/1‑125 (MQ=255)
      aGTTATTTTATAAAATATATTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTAGTTATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAACAATcccc                                                                                                                      <  1:4410305/128‑1 (MQ=255)
       tttATTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑‑AAAAAAAAAACAATCCCCtta                                                                                                                   <  1:1889196/127‑2 (MQ=255)
       gatAGTGTATATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCCtta                                                                                                                   <  2:4228775/126‑2 (MQ=255)
        ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAAAAATccaattaa                                                                                                                  >  2:3625606/1‑122 (MQ=255)
        ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑‑AAAAAAAAAAAAAAccaataaa                                                                                                                  >  2:3608359/1‑122 (MQ=255)
        ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTATATAATCGTTATCTATTTTATTATTATTTTATATAAAAAAAT‑‑AAAAAAAAAAAAATcaaattaa                                                                                                                  >  2:22461/1‑121 (MQ=255)
         tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTAATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATcaacttaaa                                                                                                                 >  2:3555210/1‑120 (MQ=255)
            tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCCttaaaaatt                                                                                                             >  1:3857548/1‑121 (MQ=255)
             gtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATAATCTATATCTATTTTATTATTTATTTATATTAACAAAA‑‑AAAAAAAAAAAAATcaaattaaaaaaa                                                                                                             >  1:598631/1‑116 (MQ=255)
                 ataataGAGTTAAGGTTAATTAAAATACCATAATCTTAATAATTCTTATTATGTAGAACCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAAAAATCACCttaaaaatttaaa                                                                                                         >  1:2921265/1‑117 (MQ=255)
                 aaaaaaactttATGGTTTATTAAAATCACATTAAATTATAAATTATTATAATGTAGATCCTGGTGATCTTTTTTTTTATTTGTTTATCATAAAAAAT‑‑AAAAAAAAAACAAACCCC‑‑Ttaaaaattaaaa                                                                                                    <  1:1046349/119‑1 (MQ=255)
                     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATACCC‑‑TTAAAAATTaaaaaaaa                                                                                                >  1:564121/1‑128 (MQ=255)
                       tatttAATGTTAATTAAAATAAAAAAAAATTAAAAATTATTATAATTTATATCCTCGTTATATATTTTTTTATTTTTTTATCTTAAAAAAA‑‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaa                                                                                              <  2:3776911/125‑1 (MQ=255)
                           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACCAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                          >  2:3507753/1‑128 (MQ=255)
                           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAAACCC‑‑TTAAAAAATaaaaaaaaaaaaaa                                                                                          >  1:3786196/1‑128 (MQ=255)
                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAAT‑‑‑CAAATAAAAAATtaaaaaaaaaaaaaa                                                                                         >  2:345444/1‑128 (MQ=255)
                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTAACAAAT‑‑AAAAAAAAAACAATACCC‑‑ATAAAAATTaaaaaaaaaaaaaaa                                                                                         >  1:2286924/1‑128 (MQ=255)
                             attttaaataaAATAAATTAAAATTAATAATTATTATAATTTATTTACTTGTGTTATATTTTTTTATTTTTTTTTTTTAAAAAAA‑‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                        <  1:4222208/125‑1 (MQ=255)
                             agtttaatttaAAAACAATAAAAATAATAATTTTTATTATTTTGATACTTTTTTAATATTTTTTTTTTTTTTTAAAATAAAAAAT‑‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                        <  1:4164608/125‑1 (MQ=255)
                             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCAAC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                        >  2:2353481/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                       >  1:3942521/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAACACC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                       >  1:4510811/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAAAAATCAC‑‑‑AAAAAAAATtaaaaaaaaaaaaaaaaa                                                                                      >  1:1446288/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTAACAAAT‑‑AAAAAAAAAAAAAACACC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                       >  1:1613993/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGAGATCAATTATTTAAAATAATAAAAATCAAAAAT‑‑AAAAAAAAAAACAAAACCaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  1:2822810/1‑128 (MQ=255)
                               tgtaaataaaATAACAAAAAATTAAAAAATCTTAAAATTTAGTACCACCTTATCTATTTTTTTTTTTTTTTTTATTAAAAAAA‑‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                      <  1:4000603/126‑1 (MQ=255)
                               gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTTTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCC‑‑‑ATAAAAAATaaaaaaaaaaaaaaaaaaa                                                                                     >  1:324255/1‑128 (MQ=255)
                                ttaattaaAAAAACAAAAAAATAATAAATATTATAAATTACATACTCTTGATCTAATTTTTTATTTTTTTAAATTCAAAAAA‑‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaa                                                                                     <  2:1910100/128‑1 (MQ=255)
                                 taattaaAATACCATAAACTTAATAAATCTTATAATGTATATACTCTTGATCTATATTTTTATTTGTTTATCTTAACAAAT‑‑AAAAAAAAAAAAAAAAAATT‑‑‑AAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                   >  2:2720797/1‑128 (MQ=255)
                                  aattaaAATACCATTAACTTAAATAATCTAATAAATTACATCCTAGTTCTATATTTTTTTATTTTGTTATCTTAAAAAAT‑‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaacta                                                                                   <  2:4203095/128‑4 (MQ=255)
                                  aattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTTAATTGAATATCATCAAAAAT‑‑AAAAAAAAAAAAATCAC‑‑‑ATAAAAAATaaaaaaaaaaaaaaaaaaaaaa                                                                                  >  1:1332652/1‑127 (MQ=255)
                                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑‑AAAAAAAAAAAAAACCAC‑‑ATAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                   >  1:3054378/1‑128 (MQ=255)
                                     taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAACCCC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                >  1:3590036/1‑125 (MQ=255)
                                      aaaaaaACATAAACTTAATAAAAATTAAAATTTAAAAACACTTCATCTATTTTTTTATTTTTTTAAATTAAAAAAA‑‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTaa                                                                               <  2:1353635/128‑1 (MQ=255)
                                       aaaTACCATAAACTTAATAATTCTTATAAAGTAGATCCTCGTGATCTATTTTTATATTTGTATATCTTCACAAAT‑‑AAAAAAAAAACAAAACAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                              >  2:2647244/1‑123 (MQ=255)
                                         aaaacATAAAAATAATAATTATTTAAATTTTTATCCTCTTGATATATTTTTTTTTTTTTTTATATTCACAAA‑‑AAAAAAAAAAAAAACCCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAAAACTaaa                                                                              <  1:4137291/124‑1 (MQ=255)
                                          tACCATAAAATTAATAAATATTAAAATTTTTATCCTTGTTTTATATTTTTTTATTTTTTTATATTAAAAAAA‑‑AAAAAAAAAAAAAACCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                            <  2:3801282/128‑1 (MQ=255)
                                            gcaaaaaattaaaaattaTTAAAATTTATATCCACGTTATATATTTTTTTATTTTTTTAAATACAAAAAA‑‑AAAAAAAAAACAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                          <  2:2402113/124‑1 (MQ=255)
                                            ccATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                         >  1:4064129/1‑128 (MQ=255)
                                            aaataaaataaaTAATTTTTTAAATTTATATCCTCGTTTTATATTTTTTTTTTTTTTTATCTTAAAAAAA‑‑AAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                         <  1:3555210/126‑1 (MQ=255)
                                             cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCACCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAATaaaaaaa                                                                          >  1:2404154/1‑126 (MQ=255)
                                             cATAAAATTAATAATTTTTATAAATTATAAAAACTTTTTATATTTTTTTTATTTTTTAAATTAAAAAAA‑‑AAAAAAAAAAAAAAACCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                        <  2:3952403/128‑1 (MQ=255)
                                             aaTAAACTTAATAATAATTATAATCAAGATCCTCGAGATCTATTATTTTATTTTTTTATCTTCACAAAT‑‑AAAAAAAAAACAAACAAC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAaaaaaaaa                                                                        >  1:3610728/2‑128 (MQ=255)
                                                aaaaataataaTTCTTATAATTTACATCCATGTGATATATTTTTTTATTTGTTTTTCTTCAAAAAT‑‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                   <  2:2469670/123‑1 (MQ=255)
                                                  acataataaTTATTTTAAATTTTATACTAGTTATATATTTTTTTATTTTTTTATATTAAAAAAA‑‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                  <  1:2100871/125‑1 (MQ=255)
                                                  aataaataatTCTTATAATTTATATACTCGTTATCTATTTTTTTTTTTTTTTATCTTAAAAAAT‑‑AAAAAAAAAACAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAtt                                                                 <  2:1712125/124‑1 (MQ=255)
                                                    ttAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAACT‑‑AAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAAATAaaacaacaatcttta                                                                >  1:2344637/1‑119 (MQ=255)
                                                         aatTATTAAAATTTACATACTCGTTAAATATTTTTTTATTTTTTTATATTAAAAAAA‑‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCttca                                                           <  2:4467436/128‑3 (MQ=255)
                                                           tttatataATTTATATACTCGTTATCTTATTTTTTATTTGTTTATCTTAACAAAT‑‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                        <  2:4139324/124‑1 (MQ=255)
                                                              taaaaaTTTAGAAACTTGTGATATTTTTTTTTTTTTTTTTATATTAAAAAAA‑‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTc                                                      <  2:1525284/124‑1 (MQ=255)
                                                               tataATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACACTCCCC‑‑‑TGAAAAATTAAAAAAAAAAAAAAAAAAACAAAAAACAAACAATATTTCTAAAAAATcac                                                    >  1:4262252/1‑126 (MQ=255)
                                                                 taAAGTAGATCATATTTATATATTTTTTTATTTTTTTTTCTTAACAAAT‑‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                   <  2:1615650/128‑1 (MQ=255)
                                                                    tGTATATCCACGTTATCTATTTTTTTATTTTTTTATATTAAAAAAA‑‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                 <  2:4363234/128‑1 (MQ=255)
                                                                      tttataatcttGATATTTTTTTTTTTTTTTTTTTAATAAAAAAA‑‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                               <  2:566975/118‑1 (MQ=255)
                                                                         ttaatCGTTATATAATTTTTTATTTTTTTATAATAAAAAAT‑‑AAAAAAAAAAAAAAACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                             <  1:3506968/124‑1 (MQ=255)
                                                                         tatcaatagttttatttttttattttttTTTTATTAAAAAAT‑‑AAAAAAAAAAAAATCCCCTTAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                              <  2:947042/116‑1 (MQ=255)
                                                                          accTTGTTATCTAATTTTTTATTTTTTTATATTAAAAAAA‑‑AAAAAAAAAACAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                          <  2:4184121/127‑1 (MQ=255)
                                                                          aacaatttatatatttttttattttttTAAATTAAAAAAA‑‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                         <  2:454873/117‑1 (MQ=255)
                                                                           cttctttttttttttttttATTTGTTTATTTTTAAAAAA‑‑TAAAAAAAAAAAATACCAAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                         <  1:3889573/116‑1 (MQ=255)
                                                                           atattgataatATTTTTTTATATTTTATTTTTAAAAAAA‑‑AAAAAAAAAAAAAAACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                            <  2:1154366/118‑1 (MQ=255)
                                                                            cattttatatttttttttatttttttaTATTAACAAAA‑‑AAAAAAAAAAAAATAACC‑‑TTAAAAATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                         <  2:1584294/117‑1 (MQ=255)
                                                                            cTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAATATATTTTTAAATATTCTCTATTATAcacaa                                        >  1:4106031/1‑124 (MQ=255)
                                                                            aatgttatataattttttAATTTTTTATATTCAAAAAA‑‑AAAAAAAAAAAAAAACCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                         <  2:2517119/116‑1 (MQ=255)
                                                                             cgtttatatATTTTTTTATATTTATATCTAAAAAAAA‑‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                       <  1:983545/120‑1 (MQ=255)
                                                                              tttttttattttttttATTTTTTATATTAAAAAAA‑‑AAAAAAAAAAAAATACCATTTAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                       <  2:1451069/119‑1 (MQ=255)
                                                                              tgtttattttttttttATTTTTTAAAATAAAAAAA‑‑AAAAAAAAAAAAAACACCTTAAAAATAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                         <  2:4264790/119‑1 (MQ=255)
                                                                               tttatatatttttttattttttTAAATAAAAAAAA‑‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                      <  2:3338378/122‑1 (MQ=255)
                                                                                 ttttattttttttattttttttatTAACAATT‑‑AAAAAAAATATTATTACCTTATAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACATACTCTATTTCTTAATTTTCGCTATTATACCACatttt                                    <  2:3700016/122‑1 (MQ=255)
                                                                                  ttatATTTTTTTTTTTTTTTATATAAAAAAAT‑‑AAAAAAAAAAAAAAACCCATAAATAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                    <  2:872565/125‑1 (MQ=255)
                                                                                  aTCAATTTTTTTATTTTTTTAACTTCAAAAAT‑‑AAAAAAAAAAAAAAACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                     <  2:4020847/128‑1 (MQ=255)
                                                                                   tatatttttttattttttTATATTAACAAAA‑‑AAAAAAAAAAAAAACCATTAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                     <  2:4077076/126‑1 (MQ=255)
                                                                                   tatatttttttattttttTAAATTAAAAAAA‑‑AAAAAAAAAAAAATACCATTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                   <  2:1785856/126‑1 (MQ=255)
                                                                                    atttttttttatttttttaTATTAAAAAAA‑‑AAAAAAAAAAAAATACCC‑‑ATAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                               <  2:2594563/125‑1 (MQ=255)
                                                                                     aaTTTTTTAATTTTTTTAATTACAAAAAA‑‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACattttatttt                               <  1:3418638/127‑1 (MQ=255)
                                                                                      aattttttttttttttATTATTAAAAAA‑‑AAAAAAAAAAAAAAACCCTTT‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                              <  2:505055/126‑1 (MQ=255)
                                                                                        ttttttATTTGTTTATATTAAAAAAT‑‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                            <  2:1234723/128‑1 (MQ=255)
                                                                                         tttttAATTTTTTATCTTAAAAAAA‑‑AAAAAAAAAAAAAAACCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                               <  1:168887/128‑1 (MQ=255)
                                                                                          ttttttttttttATTTTAAAAAAA‑‑AAAAAAAAAAAAAAACCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                           <  1:1096133/128‑1 (MQ=255)
                                                                                           tttATTTTTTTATATTCACAAA‑‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                         <  1:2645154/128‑1 (MQ=255)
                                                                                            ttATTTTTTTATATTAAAAAAT‑‑AAAAAAAAAAAATAACCATTTAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                         <  1:17293/128‑1 (MQ=255)
                                                                                               tttttttTATATTAACAAAA‑‑AAAAAAAAAAAAATCCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                       <  1:4361674/127‑1 (MQ=255)
                                                                                                 ttttttATATTAAAAAAA‑‑AAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                     <  1:3657769/125‑1 (MQ=255)
                                                                                                  tttttATATTTAAAAAA‑‑AAAAAAAAAAAAAAAACCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                     <  1:4586295/126‑1 (MQ=255)
                                                                                                    tttaaattaaaaaaT‑‑AAAAAAAAAAAAATCACATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                 <  2:1074105/117‑1 (MQ=255)
                                                                                                    tttATATTAAAAAAT‑‑AAAAAAAAAAAAAACACATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                 <  1:3473843/128‑1 (MQ=255)
                                                                                                    ttaaaaataaaaaaa‑‑aaaaaaaaaaaaATCAC‑‑ATTAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                 <  2:2182362/117‑1 (MQ=255)
                                                                                                      ttaattaaaaaaa‑‑aaaaaaaaaaaaATAACCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                 <  2:3229023/119‑1 (MQ=255)
                                                                                                              caAAA‑‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata        <  2:3728044/128‑1 (MQ=255)
                                                                                                                                  |                                                                                                                        
TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATC  >  CP016816/202353‑202597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: