mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 74 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 202,485 | 0 | T | . | 65.5% | 89.1 / inf | 242 | intergenic (+263/‑412) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 105,339 | 0 | T | G | 57.4% | 994.0 / 280.4 | 898 | intergenic (+834/+92) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 202,494 | 0 | A | T | 53.4% | 8.3 / 207.4 | 234 | intergenic (+272/‑403) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 165,250 | 0 | T | . | 45.6% | inf / inf | 999 | intergenic (+214/‑328) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 202,486 | 0 | T | . | 45.2% | 178.1 / 312.4 | 241 | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 420,253 | 0 | C | A | 42.6% | 1005.1 / inf | 1182 | intergenic (‑536/+307) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 202,477 | 0 | C | A | 38.9% | 368.3 / 136.1 | 340 | intergenic (+255/‑420) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 165,303 | 0 | C | A | 34.9% | 2230.2 / 227.7 | 1309 | intergenic (+267/‑275) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 76,878 | 0 | G | T | 34.3% | 2632.1 / 314.3 | 1501 | intergenic (‑127/+58) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein |
| * | CP016816 | 420,271 | 0 | G | T | 34.2% | 1637.8 / 184.9 | 1135 | intergenic (‑554/+289) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 202,481 | 0 | C | A | 32.3% | 329.7 / 41.1 | 284 | intergenic (+259/‑416) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 165,311 | 0 | C | A | 31.9% | 2504.7 / 197.7 | 1317 | intergenic (+275/‑267) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 202,488 | 0 | T | A | 31.7% | 155.2 / 85.0 | 235 | intergenic (+266/‑409) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 420,289 | 0 | G | T | 31.6% | 2165.5 / 246.1 | 1258 | intergenic (‑572/+271) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 203,937 | 0 | C | A | 31.1% | 1583.1 / 109.3 | 956 | intergenic (+321/+137) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 34,945 | 0 | G | T | 30.7% | 2283.4 / inf | 1597 | intergenic (+49/+117) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| * | CP016816 | 105,394 | 0 | G | T | 30.6% | 2288.0 / 236.9 | 1084 | intergenic (+889/+37) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 34,940 | 0 | C | A | 30.5% | 3108.4 / 230.0 | 1593 | intergenic (+44/+122) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| * | CP016816 | 203,912 | 0 | G | T | 30.0% | 1344.5 / 141.4 | 859 | intergenic (+296/+162) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 420,278 | 0 | C | A | 29.8% | 1849.4 / 136.4 | 1123 | intergenic (‑561/+282) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| Marginal new junction evidence (lowest skew 10 of 183 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | = 311148 | 526 (0.370) | 340 (0.190) +TATA |
89/192 | 34.2 | 33.6% | intergenic (‑71/‑243) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | 311149 = | 724 (0.400) | intergenic (‑72/‑242) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||
| * | ? | CP016816 | = 437880 | 476 (0.340) | 356 (0.200) +ATAT |
83/188 | 35.9 | 36.4% | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437881 = | 673 (0.370) | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 165253 = | 1127 (0.620) | 148 (0.090) | 69/220 | 50.1 | 13.5% | intergenic (+217/‑325) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | = 165249 | 920 (0.580) | intergenic (+213/‑329) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | = 202486 | 98 (0.050) | 230 (0.130) | 79/252 | 52.0 | 67.3% | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| ? | CP016816 | 202490 = | 125 (0.070) | intergenic (+268/‑407) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein | |||||
| * | ? | CP016816 | 117946 = | 2029 (1.120) | 76 (0.050) | 59/212 | 53.4 | 4.3% | intergenic (+67/+792) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease |
| ? | CP016816 | = 117942 | 1679 (1.100) | intergenic (+63/+796) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease | |||||
| * | ? | CP016816 | 437885 = | 992 (0.550) | 83 (0.060) | 55/204 | 53.7 | 9.7% | intergenic (‑189/+233) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437880 | 741 (0.500) | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 382385 = | 2194 (1.210) | 95 (0.060) | 54/226 | 59.0 | 4.6% | intergenic (‑165/+30) | JCVSYN2_01645/JCVSYN2_01650 | DNA polymerase III subunit alpha/tyrosine‑‑tRNA ligase |
| ? | CP016816 | 382417 = | 1997 (1.230) | coding (1243/1245 nt) | JCVSYN2_01650 | tyrosine‑‑tRNA ligase | |||||
| * | ? | CP016816 | 496355 = | 1948 (1.070) | 89 (0.050) | 54/232 | 60.2 | 4.8% | intergenic (‑55/+29) | JCVSYN2_02275/JCVSYN2_02280 | HPr(Ser) kinase/phosphatase/ECF transporter S component |
| ? | CP016816 | 496379 = | 1767 (1.060) | intergenic (‑79/+5) | JCVSYN2_02275/JCVSYN2_02280 | HPr(Ser) kinase/phosphatase/ECF transporter S component | |||||
| * | ? | CP016816 | = 165049 | 1851 (1.020) | 92 (0.060) | 49/222 | 61.0 | 5.4% | intergenic (+13/‑529) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | = 165050 | 1621 (1.010) | intergenic (+14/‑528) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | 370895 = | 1715 (0.940) | 97 (0.060) | 50/226 | 61.2 | 5.9% | intergenic (+216/+51) | JCVSYN2_01610/JCVSYN2_01615 | hypothetical protein/phosphoglycerate kinase |
| ? | CP016816 | 370925 = | 1564 (0.960) | intergenic (+246/+21) | JCVSYN2_01610/JCVSYN2_01615 | hypothetical protein/phosphoglycerate kinase | |||||