Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2780CA29.8% 1849.4 / 136.4 1123intergenic (‑561/+282)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (423/343);  new base A (164/161);  total (600/523)
Fisher's exact test for biased strand distribution p-value = 1.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1159 total aligned reads displayed.

AAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGA  >  CP016816/420149‑420405
                                                                                                                                       |                                                                                                                                   
  aaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑‑‑‑‑TTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTTATAAAACGtat                                                                                                                                 >  2:1556689/1‑128 (MQ=255)
     tttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATATATTAATCAATTTTA‑TGCTCG‑‑‑‑TTTTTTTTTTTTTTTTAAAAAAATATAAA‑TTA‑TTTTATAAAACGtaa                                                                                                                                 >  1:247243/12‑127 (MQ=255)
     tttttaatttaaatAACTGAATAATTTTTCAAATTGTTAAATTATTTTCAAATCATTATATATAAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTAAAAAAAAAATAAT‑TTA‑TTTTATATAACGta                                                                                                                                  >  1:2991971/6‑128 (MQ=255)
       tttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTAACAAAAATAAAAT‑TTA‑TTTTATAAAACTtata                                                                                                                                >  2:2912034/10‑128 (MQ=255)
        ttatttttaataaataAATTTTTTTTAAAATTTTTAAATTTTTTTAAATTAATTATATATTTATATATTTTT‑TTATAT‑‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAAT‑TTA‑TTTGATTAAACATaaat                                                                                                                               <  1:2217475/120‑1 (MQ=255)
         tttatttaataatTGTATTTTTTTTTTAATTGTTAATTTTTTTTAAAATCATTTTTTATTTATTAATTTT‑‑TTTTTT‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAATCGTATAt‑tt                                                                                                                            <  2:3816409/121‑1 (MQ=255)
          aattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCGTTTTTTTTTTTTTTTTTTTTAAAAAAATAAAAT‑TTA‑TTTTATAAAAATtata                                                                                                                                >  1:2915591/7‑128 (MQ=255)
           attttaatAAATTAATTTTTTTTCTAATTTTTTTATTATTTTCAAATCATTTTCTATTAATAAATTTTA‑TGCTAG‑‑‑‑‑TTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATg                                                                                                                         <  1:3352593/123‑1 (MQ=255)
            ttttaatatattaaTTATTTTTTAAATTGTTAAATTATTTTCAAATTATTATATATTAATTAATTTTA‑TGGTCT‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTAt                                                                                                                          <  2:1867346/116‑1 (MQ=255)
            ttttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAATTTAAT‑TTA‑TTTTATTAAACGTATAT‑TTAt                                                                                                                          >  1:3281537/5‑128 (MQ=255)
              ttaatAAATTAATTATTTTTAAAATTTTTAAATTATTTTTAAATAATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑‑TTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGtt                                                                                                                       <  2:3444316/126‑1 (MQ=255)
               taataatTGAATTATTTTTCAAATTTTTAAAATATTTTCAAAACATTATCTATTAATCAATTTTA‑TGCGCG‑‑‑‑TTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGttt                                                                                                                      <  2:3161375/127‑1 (MQ=255)
                aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCGT‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAAT‑TTA‑TTTTATTAAAATTATAT‑TTAtttt                                                                                                                       >  1:157590/1‑128 (MQ=255)
                 ataattttattattTTTAAAATTTTTAATTTATTTTAAAATAATTATATTTTAATAAATTTTA‑TTATAT‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTta                                                                                                                     <  1:1996084/120‑1 (MQ=255)
                     cTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCGT‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAAT‑TTA‑TTTTATTAAAAGTTTAT‑TTATTTTtaata                                                                                                                  >  2:823742/1‑128 (MQ=255)
                       taaTTATTTTTAAATTTTTTAAATTTTTTTTATATATTTATTTTTTAATTAATTTTT‑TTTTCT‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATaaaa                                                                                                               <  1:2285529/127‑1 (MQ=255)
                       taaTTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATTTTAATAAATTTTA‑TTCTTGT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATaaa                                                                                                                <  2:2983323/127‑1 (MQ=255)
                        atttttttttaaattttttaaatTATTTTAAAATAATTATATATTAATAAATTTTT‑TGGTCG‑‑‑‑‑TTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑Tg                                                                                                           <  1:3239685/123‑1 (MQ=255)
                         attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAAT‑TAA‑TTTTATTAAAATTATAT‑TTATTTTTATTAAAAA‑t                                                                                                            >  2:2782616/1‑128 (MQ=255)
                          ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTTATTAAACTTATAT‑TTATTTTTAATAAAAA‑Tg                                                                                                           >  1:613414/1‑128 (MQ=255)
                          ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTAAAAAAAAAAAAAA‑TTA‑TTTTATAAAAATTAATT‑TTTTTTTTaaaaaaaaat                                                                                                            >  1:2565838/1‑126 (MQ=255)
                            attTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTTATTAAAC‑TATTTATTATTTTTAATAAAAA‑Tgta                                                                                                         >  1:2076398/1‑126 (MQ=255)
                             tttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTA‑AAAAAAATAATAATATTTTAAATAATAATATAT‑TAATTTTTAATAAAAA‑tata                                                                                                         >  2:1199030/1‑125 (MQ=255)
                              ttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAATAAAAT‑TTA‑TTTTATTAAACTTATAT‑TTATTTTTAAAAAAAA‑tttaaa                                                                                                       >  1:171568/1‑123 (MQ=255)
                              ttttCAAATTGTTAAATTATTTTCAAATCATTATCAATTAATAAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTATTTTACAAAAAAATAAT‑TTT‑TATGATTATAACTATAT‑TAATTATAAAAAAAAA‑tacaaa                                                                                                       >  2:3674871/1‑123 (MQ=255)
                               ttttAATTTTTTAAATTTTTTTATAATAATTTTTTATTAAATAATTTTATTTTTTT‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTTATTAAAAGTATAT‑TTATGTTTAATAAAAA‑TGGaaa                                                                                                       <  2:2569241/128‑1 (MQ=255)
                               tttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTACAAAAAAATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGaaaa                                                                                                      >  1:3184368/1‑128 (MQ=255)
                               tttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAAT‑TTA‑TTTTATTAAAATTATAT‑TTATTTTTAATAAAAA‑TTAaaaa                                                                                                      >  1:969711/1‑128 (MQ=255)
                                ttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAAT‑TTA‑TTTTATTAAAATTTTTT‑TTTTTTTTATTAAAAA‑TTGaaaat                                                                                                     >  1:451628/1‑127 (MQ=255)
                                 tCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAAAATAAT‑TTA‑TTTATTTAAAAGAATAT‑TTATTTTTAATAAAAA‑TGTaaaaaa                                                                                                    >  1:1660314/1‑126 (MQ=255)
                                  cAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCGT‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAAT‑TTA‑TTTTATTAAAATTATAT‑TTTTTTTTAATAAAAA‑TGTaaaata                                                                                                    >  1:3597452/1‑126 (MQ=255)
                                    aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAAT‑TTT‑TTTTATTAAAAGTATTT‑TTTTTTTTAATAAAAA‑TGaaaattaaat                                                                                                 >  1:182816/1‑122 (MQ=255)
                                      ttGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAAAAAATT‑TTT‑TTTTATTAACATTAAAT‑TTAT‑TTTAAAAAAAA‑TTGTaaaaaaattta                                                                                              >  2:1030419/1‑124 (MQ=255)
                                        gTTAAATTATTTTTAATTTATTTTATTTTAATCAATTTTA‑TGTTTG‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGaa                                                                                             <  2:3100591/128‑1 (MQ=255)
                                          ttaaTTTTTTTATAATTATTTTTTATTTATTAATTTTA‑TGTTCGT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAAt                                                                                            <  2:3597452/126‑1 (MQ=255)
                                          tAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAAT‑TTA‑TTTTATTAAACGTTTTA‑TTTTTTTTAATAAAAA‑TTGAAAATAAAGTTAAtt                                                                                           >  2:2046157/1‑128 (MQ=255)
                                          tAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAAAATAAT‑TTA‑TTTGATTAAACGTTTAT‑TTATTTTTAAAAAAAA‑TGTAAATGAAATTTAAtt                                                                                           >  1:3087947/1‑128 (MQ=255)
                                           aaaTTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAATAAAAT‑TTT‑TTTAATAAAAATTTAAT‑TTATTTTAAAAAAAAA‑TGAAAAAAAAATTTAAttt                                                                                          >  2:2346997/1‑127 (MQ=255)
                                               tattTTCAAATTATTATCTATTATTAAATTTTA‑TTCTCG‑‑‑‑TTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑Cat‑a                                                                                   <  2:3262326/128‑1 (MQ=255)
                                                attTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTTATTAAACGTATAT‑TTTTGTTAAATAAAAA‑TGGTAAAGAAATTTAATTAT‑Cat‑a                                                                                   >  1:1256999/1‑128 (MQ=255)
                                                  tttCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑‑TTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTTATTAAACGTATAT‑TTATGTTTAATAAAAA‑TTTAAAAGAAATTGAATTTT‑Cat‑aata                                                                                >  1:2361519/1‑128 (MQ=255)
                                                     cAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGTAAAATAAAGTGAATTTT‑CAT‑aataat                                                                              >  1:3157310/1‑128 (MQ=255)
                                                     aaaaTAATTTTTTATTATTAAATTTTA‑TGCTTT‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑aataat                                                                              <  2:3303944/127‑1 (MQ=255)
                                                       aaTCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑‑‑TTTTTTTTTTTTTTTAAAAAAAAATATT‑TTT‑TTTTATTAAACGTATAT‑TATTTTTTAATAAAAA‑TGTAAAATAATATTAATTTA‑AAT‑AAtaattaat                                                                          >  1:3818878/1‑125 (MQ=255)
                                                        aTCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTAAAAAAAAT‑TAAA‑TTA‑TTTTAATAAAAATATTT‑TTTTTTTTTATAAAAA‑TTTAAAAAAAAATTAATTAT‑AAT‑AAttatttta                                                                          >  1:1012868/1‑126 (MQ=255)
                                                          cATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑‑TTTTTTTTTTTTTTTTAAAAAAAAATAAT‑TTA‑TTTTATTAAAATTTTTT‑TTTTTTTTAATAAAAA‑ATTAAAAATAATTTAATTTT‑TAA‑TAtaatttaaat                                                                        >  1:1512723/1‑126 (MQ=255)
                                                              aTCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAAAATAAT‑TTA‑TTTAATTAAAATTATAT‑TAATTTTTAATAAAAA‑TTTAAAAAAAATTAAATTTT‑AAA‑AATAATTTAATTaaa                                                                     >  2:1350163/1‑128 (MQ=255)
                                                               tCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAAT‑TTA‑TTTTATTAAAAGTATAT‑TTTTTTTTAAAAAAAA‑TGTAAAATAAAGTTAATTTT‑AAT‑AATAATTTAATTAAat                                                                    >  1:2600684/1‑128 (MQ=255)
                                                                   ttAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAATAAAGTGAATTGT‑CAT‑AATAATTTAATTAAatatat                                                                >  1:833821/1‑128 (MQ=255)
                                                                    tAATCAATTTTA‑TGCTCGT‑‑TTTTTTTTTTTTTTTTTAAAAAAATAAAAT‑TTA‑TTTTATTAAACTTATAT‑TT‑TTTTTAATAAAAATTTTAAAATAAATTTAATTTA‑AAT‑AATATTTTAATAAAataata                                                                >  1:1912593/1‑125 (MQ=255)
                                                                      aTCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TTTAAAATAAATTTAATTTT‑CAT‑AATAATTTAATTAAATATATAAc                                                             >  1:3903834/1‑128 (MQ=255)
                                                                        cAATTTTA‑TGCTCG‑‑‑‑TTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATTTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTATTTAAATATATAAAAAt                                                          >  1:3859945/1‑128 (MQ=255)
                                                                         aaTTTTA‑TGCTCG‑‑‑‑TTTTTTTTTTTTTTATAAAAAAAAAAAAT‑TTT‑TTTTATAAAAATTAAAT‑TAATTTTTAAAAAAAA‑T‑TAAAAAAAAATTAATTTT‑AATAAAAAATTTAATAAAATATATAAAAAtt                                                         >  2:545739/1‑127 (MQ=255)
                                                                          aTTTTA‑TGCTCGT‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAAT‑TTA‑TTTTATTAAACGTATAT‑TTATTTTTAATAAAAA‑TGGAAAAAAAAGTGAATTGT‑AAT‑AATAATTTAATTAAATTTATAAAAAt                                                          >  2:3036899/1‑128 (MQ=255)
                                                                           ttttA‑TGCTCG‑‑‑‑TTTTTTTTTTTTTTTTAAAAAAAAAAAAT‑TTT‑TTTTAATAAAAGTTTTT‑TTTTTTTTAATAAAAA‑TTGAAAAAAAATTTAATTTTAAAT‑AATAA‑TTAAATAAATATAAAAAAAtttt                                                       >  2:1934691/1‑125 (MQ=255)
                                                                               a‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTTTGTTTAATAAAAA‑TTGAAAAGAAAGTTATTTGT‑AAT‑AATAATTTAATTAAATATATAAAAATTTATGt                                                    >  2:3752706/1‑128 (MQ=255)
                                                                                 tGCTCG‑‑‑TTTTTTTTTTTTTTTTAAAAAAAATAAAAT‑TTT‑TTTTATTAACCTTATTT‑TTAT‑TTTAATTAAAA‑TTGAAAAAAAAATTAAATTT‑TATAAAAAATTTATTTAATTATTAAAAaatttaattt                                                   >  1:108597/1‑128 (MQ=255)
                                                                                   ttttttttttttttttttttttttAAAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGt                                                    <  2:249607/121‑1 (MQ=255)
                                                                                   tttttttttgttttttttttttttACAAAAATATAAT‑TTA‑TTTGATTAAAAGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGt                                                    <  2:2658132/118‑1 (MQ=255)
                                                                                   tttgtattttttttttttttttttACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGt                                                    <  2:3505709/121‑1 (MQ=255)
                                                                                     ttttttttttttttttttttttATAAATATATAAT‑TTA‑TTTGATTAAAAGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTTAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGttt                                                  <  2:171568/123‑1 (MQ=255)
                                                                                     cG‑‑‑TTTTTTTTTTTTTTTTTAAAAAAATAAAAT‑TTA‑TTTTATTAAACTTAATT‑TTATTTTTAATAAAAA‑TTTAAAATAAATTTAATTTA‑AAT‑AATAATTTAATTAAATATATAAAAATTTAATTTTTaa                                               >  1:52447/1‑128 (MQ=255)
                                                                                       ttagttttttttttttttttACAAAATTATAAT‑TTA‑TTTGATTAAAATTATAT‑TTATGTTTTATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTa                                                <  1:2119431/124‑1 (MQ=255)
                                                                                          tttttttttttttttttATATTAATATAAT‑TTA‑TTTGATTTTATGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTaaaa                                             <  2:1648246/128‑1 (MQ=255)
                                                                                          gttttttttttttttttACAAAAATATAAT‑TTA‑TTTTTTTAAACGTATAT‑TTATTTTTAATAAAAA‑TGGAAAATAAAGTGAATTGT‑CAT‑AATATTTTAATTAAAAATAAAAAAATGTAAGTTTTaaaa                                             >  2:930149/2‑128 (MQ=255)
                                                                                           ttttttttttttttttACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATTTTTAATAAAAA‑TGGAAAAAAAATTGAATTGA‑CAT‑AATAATTTAATTAAATATATAACTATTTAATTTTTAAAac                                            >  1:3749892/1‑128 (MQ=255)
                                                                                           ttttttttttttttttACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTTATAAAAA‑TTAAAAATAAAGTTAATTGT‑AAT‑AATAATTTAATAAAATTTATAACAATTTAAGTTTTaaaaa                                            >  1:3532358/1‑127 (MQ=255)
                                                                                           ttttttttttttttttACAAAAATATAAT‑TTA‑TTTGATTAAAAGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                                            <  1:3025251/128‑1 (MQ=255)
                                                                                           ttttttttttttttttAAAAAAATTTAAT‑TTA‑TTTGATTAAAAGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                                            <  2:2224335/128‑1 (MQ=255)
                                                                                           gtttttttttttttttACAAAAATATAAT‑TTA‑TTTGATTAAAAGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                                            <  1:1349787/127‑1 (MQ=255)
                                                                                            tttttttttttttttAAAATAATATAAT‑TTA‑TTTTATTAAAAGTATAT‑TTATTTTTAATAAAAA‑TTGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAact                                           <  2:738745/128‑1 (MQ=255)
                                                                                             ttttttttttttttAAAAAAATATAAT‑TTA‑TTTTATTAAACGTATAT‑TTATTTTTAATAAAAA‑TGTAAAATAAATTTAATTGT‑AAT‑AATAATTTAATTAAATTTATAACAATTTAATTTTTAAAaatt                                          >  2:394355/1‑128 (MQ=255)
                                                                                              tttttttttttttACAAAAATATAAT‑TTA‑TTTGATTAAACGTATTT‑TTTTGTTTAATAAAAA‑TGGAAAAGAAATTTAATTGT‑AAT‑AATAATTTAATTAAATATATTACAAAGTAATTTTTAAAactta                                         >  1:279603/1‑128 (MQ=255)
                                                                                               ttttttttttttAAAAAAATATAAT‑TTA‑TTTGATTATAAGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttac                                        <  1:3957032/128‑1 (MQ=255)
                                                                                                     ttttttACAAAAATATAAT‑TTA‑TTTGATTATTCGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttttt                                  <  2:2113531/128‑1 (MQ=255)
                                                                                                     ttttttAAAAAAATATAAT‑TTA‑TTTGATTAAACGTATTT‑TTTTGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑AAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTAAtttttt                                  >  1:1161203/1‑128 (MQ=255)
                                                                                                      tttttACAAATATATAAT‑TTA‑TTTGATTAATAGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTg                                 <  1:3443633/128‑1 (MQ=255)
                                                                                                        tttACATATATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtt                               <  2:3218162/128‑1 (MQ=255)
                                                                                                         ttaaatttatatAAT‑TTA‑TTTGATTTAATTTTTAT‑TTATGTTTAATAAAAA‑TGGTTAAGAAATTGAATTGT‑AAT‑AATATTTTAATTAAATATTTATCAATGTAAGTTTTAAAACTTACTTTTTTGttt                              <  2:631325/120‑1 (MQ=255)
                                                                                                         ttACAAAAATATAAT‑TTA‑TTTGATTAAACTTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAACTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGttt                              <  2:1447758/128‑1 (MQ=255)
                                                                                                         ttACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGttt                              <  2:2271267/128‑1 (MQ=255)
                                                                                                          tACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtttt                             <  2:3858720/128‑1 (MQ=255)
                                                                                                            aaaaaaaATAAT‑TTA‑TTTAATTAAACAAATAT‑TTATTTTTAATAAAAA‑TGGAAAAGAAATTAAATTGT‑AAA‑AAAAATTTAAATAAATATAAAAAAATTAAATTTAAAAAACTAAATTTTATATAttta                           >  2:1782635/2‑128 (MQ=255)
                                                                                                               aaaTATAAT‑TTA‑TTTTATTAAAAGTATAT‑TTATGTTTAATAAAAA‑TTTAAAAGAAATTTAATTGT‑AAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttattt                        <  1:1423455/128‑1 (MQ=255)
                                                                                                                    taAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGt                   >  2:412947/1‑128 (MQ=255)
                                                                                                                     aaT‑TTT‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTa                  <  2:3543944/128‑1 (MQ=255)
                                                                                                                     aaT‑TTA‑TTTGATTAATCTTATAT‑TTTTGTTTAATAATAA‑TTGTTAAGAAATTGAATTGT‑ATT‑AATAATTTATTTAAATATATAAAAATTTAATTTTTAAAACTTAATTTTTTGTTTTTATTTACTGTa                  <  1:1782811/128‑1 (MQ=255)
                                                                                                                         tta‑tttGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTaaaa               >  1:885088/1‑128 (MQ=255)
                                                                                                                          ta‑tttGATTATACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttttt                                  <  1:714034/108‑1 (MQ=255)
                                                                                                                           atttttATTAAACATAAAT‑ATACGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAAc              <  2:1280156/126‑1 (MQ=39)
                                                                                                                           a‑tttGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACa             >  1:3664040/1‑128 (MQ=255)
                                                                                                                             tttGATTAAACTTATAT‑TTATGTTTAATAAAAA‑TGGAAAATAAATTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTATTTTGTTTTTATTTAATGTAAAACaa            >  1:2654141/1‑128 (MQ=255)
                                                                                                                             tttGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa            >  2:3350897/1‑128 (MQ=255)
                                                                                                                             tttGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAG‑AATAATTTATTTAAATATATAACAATGAAAGATTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa            >  1:2714047/1‑128 (MQ=255)
                                                                                                                               tGATTATAAGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑AAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaa          <  2:1099818/128‑1 (MQ=255)
                                                                                                                               tGATTAAAAGTATAT‑TTATGTTTAATAAAAA‑TGGAATAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaa          <  2:491302/128‑1 (MQ=255)
                                                                                                                                  ttAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaaaaa       >  2:2185447/1‑128 (MQ=255)
                                                                                                                                   tAAACGTATAT‑TTATGTTTAATAAAAA‑TGGATAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAaag      <  1:3382611/128‑1 (MQ=255)
                                                                                                                                    aaaaGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAaaga     <  1:3570598/128‑1 (MQ=255)
                                                                                                                                      aCGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAaagaag   >  2:3412873/1‑128 (MQ=255)
                                                                                                                                       |                                                                                                                                   
AAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTTACAAAAATATAAT‑TTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGA  >  CP016816/420149‑420405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑