Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8780GT34.3% 2632.1 / 314.3 1501intergenic (‑127/+58)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (792/155);  new base T (9/485);  total (806/695)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1522 total aligned reads displayed.

TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAA  >  CP016816/76751‑77007
                                                                                                                               |                                                                                                                                      
    atCTCCTTAAAAATTTATATATATTAGTGAACGTAAGGATGTATTATTCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATTAAGATAAATTTTTTAAAGaaaa                                                                                                                                    >  2:3773485/1‑128 (MQ=255)
     tctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGaaaaa                                                                                                                                   <  2:3847445/128‑1 (MQ=255)
      ctcCTTAAAAATTTATATATAATAGTGAACTTAAGGATGTATAATACAAAATAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACAATATATAAAGATAAATTTTTTAAAGAAAAat                                                                                                                                  <  1:704891/128‑1 (MQ=255)
          ttAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCAAAATTCCACTTTAAATTCAAATAAAATTATATAAAGATAAATTTTTTAAAGAAAAATATTa                                                                                                                             >  1:1227260/1‑128 (MQ=255)
           tAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTAc                                                                                                                            >  1:2060328/1‑128 (MQ=255)
             aaaaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAACTTTTATAAAGAAAAATATTACaa                                                                                                                          >  1:880972/1‑128 (MQ=255)
               aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑t                                                                                                                    >  2:1894111/1‑128 (MQ=255)
               aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAAAAAAATATTACAA‑‑C‑‑t                                                                                                                    >  1:1848950/1‑128 (MQ=255)
                 tttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑ttt                                                                                                                  >  1:3462592/1‑128 (MQ=255)
                 tttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑ttt                                                                                                                  >  2:1675290/1‑128 (MQ=255)
                    atatatatTATGGAAATTAATGATTTAAAAAACAAATTTAAAATAAATTTAAAAACAAAATTCCCCTTTAAATTCAATTAACTTTATATAAACATTAATTTTTTAAATAAAAATTTTAAAA‑‑C‑‑tttttt                                                                                                               <  2:1394151/128‑1 (MQ=255)
                       tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑ttttttttt                                                                                                            >  1:1725389/1‑128 (MQ=255)
                       tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑ttttttttt                                                                                                            >  2:767559/1‑128 (MQ=255)
                       tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑atttttttt                                                                                                            >  1:776575/1‑128 (MQ=255)
                       tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTATAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑tttttttat                                                                                                            >  1:1003901/1‑126 (MQ=255)
                        attttattgtaattAATGATGTTTAATAAAAATTAATAATAACTGTACAACACAAAATCCCCTTTAAATTTAAATAAAATTATATAAATATAAAATTTTTAAATAAAAATATTACAA‑‑A‑‑tttttttttt                                                                                                           <  2:3357026/116‑1 (MQ=255)
                        atatttttttaCTTAATGATTTATAAAACAAATTAATAAATAATGTACAACCCAAAATCCCCTTTAAATTCAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTACAA‑‑A‑‑tttttttttt                                                                                                           <  2:1740363/118‑1 (MQ=255)
                                  aCTTAAGGATGTATAAAAAAAATTAATAATAAATGTACAAACAAAATTACCCTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTTCAA‑‑C‑‑TTTTTTTTTTTTTTTGGAAc                                                                                                <  2:3204467/128‑1 (MQ=255)
                                      aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTaa                                                                                             >  2:3404789/1‑128 (MQ=255)
                                      aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTAGAAATaa                                                                                             >  2:160518/1‑128 (MQ=255)
                                       aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTaaa                                                                                            >  1:3074261/1‑127 (MQ=255)
                                        gtttttataATACAAATTTAAATAAAATGTTCAAACCAAATTCCCCTTTATAATCAAATTTATTTTTATAAATTTAATTTTTTTAAATAAAAATTTTTAAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACat                                                                                          <  1:642415/123‑1 (MQ=255)
                                        ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATaaaa                                                                                           >  1:179590/1‑126 (MQ=255)
                                        ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGAACTAACat                                                                                          >  1:2012681/1‑128 (MQ=255)
                                        ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAAAat                                                                                          >  1:589189/1‑128 (MQ=255)
                                        ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCACTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTATTTTATTTTATTTGAAATaaaa                                                                                           >  1:3530153/1‑126 (MQ=255)
                                         gATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAAATAACata                                                                                         >  1:2287669/1‑128 (MQ=255)
                                            gTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑GTTTTTTTTTTTTTTGGAACAAACATATAAt                                                                                     >  2:2584446/1‑128 (MQ=255)
                                             tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTAGTAAATAACaaaaaa                                                                                      >  2:3049084/1‑123 (MQ=255)
                                             tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATAACAA‑‑C‑‑TTTTTTTTTTTTTTATTGAACTAACtaataa                                                                                      >  1:1562926/1‑128 (MQ=255)
                                             tataAAAAAAATTAATAATAACTGTTAAACACAAATTAACCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAAt                                                                                     <  1:137896/128‑1 (MQ=255)
                                              ataaaaAAAAATAAAAATAAATTTAAAACAAAAATTCCATTTTAAATTAAAATAAAATTATATAAAAAAAAATTTTTTAAAAAAAAAAATTAAAAA‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATaa                                                                                      <  2:2033877/128‑1 (MQ=255)
                                              aaaataAAAATTAAAAAAAACTTTACAACCCAAAATCACCTTTAAATTAAAATAACATTAATTTAACAAAAATTTTTTAAATAAAAAAATTACAA‑‑C‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAAt                                                                                     <  1:3391791/126‑1 (MQ=255)
                                                aattaaaaTTAATAATAAATTTAAAACCCAAATTCCCCTTTTAATTCAAATAAAATTATTTAAATATAAATTTTTTTAATAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAAtttt                                                                                  <  1:3113289/123‑1 (MQ=255)
                                                 ataCAAATAAATAATAACTGTACAACCAAAAATCCCAGTTAAATTCAAATAACAATATATAAAGTTAAATTTTTTAAAGAAAAATAATACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTa                                                                                 <  1:2841276/128‑1 (MQ=255)
                                                 aaaaaaaTTAATAAAAACAGTACAACACAAATTACCATTTAAATTCAAATTACATTATATAAATATAAATTTTTTAAATAAAAAAATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAAtttt                                                                                  <  1:3711227/124‑1 (MQ=255)
                                                  taCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAAATAACATATATTTTTAc                                                                                >  2:3959105/1‑128 (MQ=255)
                                                    cAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTTTAAATAACATAAAAATTTAca                                                                               >  1:2550445/1‑127 (MQ=255)
                                                     aatataattataaCTGTTATACCCAAATTTCACTTTAAATTAAAATAACATTATATAAAGATAAATTTTTTAAATAAAAATATTACAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAAtttgtaaa                                                                              <  2:3638115/124‑6 (MQ=255)
                                                     aaaTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAAAAAAATATAATTTAAcaa                                                                              >  2:1258928/1‑126 (MQ=255)
                                                     aaaTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACaaa                                                                             >  2:21015/1‑128 (MQ=255)
                                                      aaTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAACTAACATTAAATTTTACaaa                                                                             >  2:935221/1‑128 (MQ=255)
                                                         taataataaCTTTAAAAACAAAATTCCCATTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAAAATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAattat                                                                         <  1:2779225/128‑1 (MQ=255)
                                                            aaaaaaCTTTACAACCCAAATAGCCATAAAAATACAAAAAAAATTAAATAAATAAAAATTTTTTAAATAAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                       <  2:2257358/124‑1 (MQ=255)
                                                             aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTATTTTTGTAAATAACAAATAATTTTACCAAttattaaa                                                                     >  2:664116/1‑126 (MQ=255)
                                                             aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTCTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAAAAAACAAAAAAATTTACCAAttattaa                                                                      >  2:2137990/1‑127 (MQ=255)
                                                              ataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTTAAAATAAAATATATTTTTACAAtttatatta                                                                     >  1:3257722/1‑124 (MQ=255)
                                                              ataaCTGTACAACCAAAATTCCCCTTTAAAATAAAAAAACATTAAATAAATATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGa                                                                     <  1:982147/128‑1 (MQ=255)
                                                              ataaATTTAAAAACCAAATTTAACTTTTAATTTAAATAAAATTATTTAAATATAAATTTTTTAAATAAAAATTTTAAAAATT‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                       <  2:3105596/128‑1 (MQ=255)
                                                                aaCTGTACAACCAAAATTACCCTTTAAATTCAAATAAAATTATATAAAGTTAAATTTTTTAAATAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatt                                                                  <  1:3586581/128‑1 (MQ=255)
                                                                 aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTTTAAATAAAAAATAATTTTAACAATTATTATaaat                                                                  >  2:2648688/1‑126 (MQ=255)
                                                                 aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAAATAAAATTTAATTTTACCAATTATTATaatt                                                                  >  2:1523629/1‑128 (MQ=255)
                                                                 aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATACAATATAATTTTACAAATTATTTGtatt                                                                  >  2:352617/1‑128 (MQ=255)
                                                                   tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTATTTTTTGTAACTAAAATATAATTTTACAAATTTTTATaaattc                                                                >  2:2532526/1‑128 (MQ=255)
                                                                   tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGTAAAAAAAAAATAATTTTAACAATTATTAGaatttaa                                                               >  1:2938208/1‑126 (MQ=255)
                                                                     tACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTTTAAATAAAATATAATTTTAAAAATTATTAAaatttaaa                                                              >  1:238358/1‑128 (MQ=255)
                                                                     tACAACACAAATTCCCCTTTAAATTAAAATAAAATTATATAAATATAAAATTTTTAAATAAAAATATTAAAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                             <  1:3209828/128‑1 (MQ=255)
                                                                      aCAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTAGGAAAAAAAATAAAATTTAACAAATTTATATaatttaaaa                                                             >  2:370503/1‑127 (MQ=255)
                                                                         aaacAAATTACCATTTAAAATAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTAAAAA‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaattt                                                           <  1:1303907/125‑1 (MQ=255)
                                                                         aCCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAAAAAAAATAAAATTTTACCAATTATTTTaatttaaattta                                                          >  1:3834711/1‑127 (MQ=255)
                                                                             aaaTTACCATTTAAATTAAAATAAAATTTTATAAATATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                     <  2:1091608/128‑1 (MQ=255)
                                                                             aaaTTACACTTTAAATTTAAATAAAATTATAAAAATATAAATTTTTTAAATAAAAATATTAAAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAg                                                      <  1:1427472/128‑1 (MQ=255)
                                                                              aatttacatttaaatttaaaTAAAATTATTTAAATATAAATTTTTTAAATAAAAATTTTAAA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                    <  2:872075/120‑1 (MQ=255)
                                                                              aattacaatttaaatttaaaATAAATTATATAAATATTAATTTTTTAAATAAAAATATTAAAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                     <  1:3962771/120‑1 (MQ=255)
                                                                              aaatttaattttAATTAAAATAACATTTAATAATTATAAATTTTTTTAATTTAAATTTTTCAA‑‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATATTTTTTCCAATTATTAGAATTTCAATTTCACAGAt                                                    <  2:2896636/120‑1 (MQ=255)
                                                                              aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑CTTTTTTTTTTTTTTTTTTGGAAAAAAAAAAAAATTTAACAAATTTTTATaatttaatataacaa                                                       >  2:1978306/1‑118 (MQ=255)
                                                                              aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACAAATTATTTGatttaaaattaaacata                                                     >  1:3319689/1‑121 (MQ=255)
                                                                              aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGAAAATAACATATAATTTAAACAATTATTAGAATTACAATTTaacata                                                     >  1:1515628/1‑126 (MQ=255)
                                                                               attttcatttaaatttaaaAATAATTATTAAAATAATAATTTTTTAAATTAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                    <  2:1466979/121‑1 (MQ=255)
                                                                               aatacccTTTAAATTCAAATAAAATTATTTAAATATAAATTTTTTAAATAAAAATATTAAAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTATCAATTATTAGAATTTCAATTTCACAGATg                                                   <  2:3567851/124‑1 (MQ=255)
                                                                                 tacccTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTAAAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGaa                                                 <  1:1929653/126‑1 (MQ=255)
                                                                                   cccTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTTTAAAAAACAAATAATTTAAAAAATTATTATaatttaaaattaaaatattaat                                                >  1:3788299/1‑117 (MQ=255)
                                                                                   accatttaaTTAAAAAAAAATTATAAAAATATTAATTTTTTAAAGAAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                                <  1:2126339/121‑1 (MQ=255)
                                                                                   acaattaaattaaaAATAAATTTAATAAATATAAATTTTTTAAATAAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                                <  1:1166619/124‑1 (MQ=255)
                                                                                      ttttAATTTAAATAAAATTATATAAATTTAAATTTTTTAAATAAAAATATTAAAAA‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTg                                              <  2:3291885/128‑1 (MQ=255)
                                                                                       ttAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑CTTTTTTTTTTTTTTTGTAAAAAAAATATAATTTTAAAAATTTTATAAATTTAAAATTAAAAGATGATTTAAt                                            >  1:49274/1‑128 (MQ=255)
                                                                                        tataTTAAAATAAATTTATATAAATATAAAATTTTTAATGAAAAATATTACAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                           <  1:363247/125‑1 (MQ=255)
                                                                                        taatattaaaTAAAATTTTTTAAATTTTAATTTTTTATATAAAAATTTTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTTGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                           <  2:2708140/121‑1 (MQ=255)
                                                                                        tAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAACTAACATAAAATTTTACAAATTATTATAATTTAAATTTAAAAAATTAATTGAtt                                           >  1:2647987/1‑128 (MQ=255)
                                                                                        tAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAACTAAAATAAAATTTTAAAAAATATTAGAATTTAAATTTAAAATATTaattaatt                                           >  1:3896112/1‑128 (MQ=255)
                                                                                        tAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACAAACATATATATTAACAAATAATAATAATTACAATATcccataataaaagatt                                           >  1:2487992/1‑116 (MQ=255)
                                                                                        tAAATTAAAATAAAAATATATAAAAATAAAATTTTTAAATAAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                           <  2:1176669/128‑1 (MQ=255)
                                                                                         aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTTTAAATAAAAAATATTTTTACAAATTTTTATATTTTAAATTTAAAATATTAATTAAttt                                          >  2:2321338/1‑128 (MQ=255)
                                                                                            ataaaaTAACATTATATAAATATAAATTTTTTAAATAAAAATATTAAAA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttctt                                       <  2:1821124/125‑1 (MQ=255)
                                                                                                    aaattattTTAATATTATTTTTTTAAATTAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTaataat                               <  2:238358/126‑1 (MQ=255)
                                                                                                    aCATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAAATAAAATATATTTTTACAAATTATTAGAATTTAAATTTCAAATATGAATTTATTAATTCTAAAAAtt                              >  1:2441048/1‑128 (MQ=255)
                                                                                                           atatatttAAATTTTTTAAATAAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                        <  1:2686711/121‑1 (MQ=255)
                                                                                                            taaaataaaaTTTTTTAAATAAAAATATTAAAAA‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                        <  2:58489/121‑1 (MQ=255)
                                                                                                            taAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTCAATTTAACAGATGAATTGATTTCTTCTAATAATTTGTCtatata                    >  1:1640940/1‑128 (MQ=255)
                                                                                                             aaaGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTTGAACTAAAATATAATTTTACAAATTATTATAATTTAAATTAAACATATGAATTGATTAATTCTAATAAATTGTatatt                      >  1:3165181/1‑127 (MQ=255)
                                                                                                                 tataaTTTTTTAAATAAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                  <  2:1332872/125‑1 (MQ=255)
                                                                                                                    aaTTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCAAAGATGAATTGATTTCTTCTAATAATTTGTATAAATAGATGt               >  2:49210/1‑128 (MQ=255)
                                                                                                                        ttttAATAAAAAATTTAAAC‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt          <  2:3160315/128‑1 (MQ=255)
                                                                                                                         tttAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTTGAACTAAAAAAAAATTTTACCAATTATTATAATTTCAATTTAACATATGAATTTATTTCTTATAATAATTTTTAAATATATAtttttttt          >  2:2971250/1‑128 (MQ=255)
                                                                                                                         tttAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACAAATTATTATAATTTAAATTTAACATATGATTTGATTTATTATAATAATTTTTATATATATTTGTTTTTta         >  1:1097594/1‑128 (MQ=255)
                                                                                                                          ttAAATAAAAATATTAAAAATT‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGttttt           <  2:278999/128‑1 (MQ=255)
                                                                                                                            aaaTAAAAATATTAAA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTatat      <  2:243516/128‑1 (MQ=255)
                                                                                                                            aaaGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGTAAATAAAATAAAATTTTACAAATTAATAGAATTTCAATATAACAAATAAAATGATATCTTCAAATAATTTGTCTATATATATGTTTTTTaaat      >  2:2474307/1‑128 (MQ=255)
                                                                                                                             aaGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACAAACAAATAATTTTACCAAAAATTAGAATTTAAATTTCACATATGAATTGATTTATTATAATAATTTTTATATAATGATTTTTTTTatat      >  1:2196827/1‑128 (MQ=255)
                                                                                                                               gAAAAATATTACAA‑‑C‑‑TTATTTTTTTTTTATGGAACTAAAATATAATTTTACCAATTATAAGAATTACAATTTAAAAAATTAAATCAATACTTAAAATAATTTATAAATTTATATGTTTATAATATCTa   >  1:3006399/1‑128 (MQ=255)
                                                                                                                               |                                                                                                                                      
TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAA  >  CP016816/76751‑77007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: