mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 374,944 | G→A | 6.7% | intergenic (+63/‑515) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 374,972 | T→C | 10.1% | intergenic (+91/‑487) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 374,974 | A→G | 8.6% | intergenic (+93/‑485) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 374,986 | T→C | 11.0% | intergenic (+105/‑473) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 413,088:1 | +G | 5.9% | coding (2666/3147 nt) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 671,662 | C→A | 4.3% | S175S (TCG→TCT) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 1,059,531 | Δ1 bp | 5.4% | coding (276/2547 nt) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
| RA | 1,261,890 | G→A | 11.7% | intergenic (‑15/+136) | prs ← / ← ispE | phosphoribosylpyrophosphate synthase/4‑diphosphocytidyl‑2‑C‑methylerythritol kinase |
| RA | 1,287,187 | A→T | 18.4% | noncoding (50/171 nt) | rttR ← | rtT sRNA, processed from tyrT transcript |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,466,711 | T→C | 9.8% | pseudogene (1320/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,488,680 | T→C | 8.9% | L150P (CTG→CCG) | aldA → | aldehyde dehydrogenase A, NAD‑linked |
| RA | 1,677,913 | T→C | 100% | intergenic (‑10/‑514) | pntA ← / → ydgH | pyridine nucleotide transhydrogenase, alpha subunit/DUF1471 family periplasmic protein |
| RA | 1,780,181 | A→G | 5.3% | K189E (AAA→GAA) | ydiQ → | putative electron transfer flavoprotein subunit |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 2,032,558:1 | +G | 6.2% | coding (522/696 nt) | yedJ ← | putative HD superfamily phosphohydrolase |
| RA | 2,074,924 | A→T | 6.2% | Y49F (TAT→TTT) | yeeR → | CP4‑44 prophage, putative membrane protein |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,198,447 | T→C | 7.1% | pseudogene (1976/2847 nt) | yehH → | DUF4132 family pseudogene, defective yehI paralog, molybdate metabolism regulator, first fragment, molybdate metabolism regulator, second fragment 2, yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| RA | 2,304,520 | G→T | 10.7% | intergenic (+129/+586) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,304,535 | A→G | 11.6% | intergenic (+144/+571) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,398,648 | Δ1 bp | 5.3% | coding (1516/2727 nt) | nuoG ← | NADH:ubiquinone oxidoreductase, chain G |
| RA | 2,437,244 | A→T | 8.9% | I202I (ATT→ATA) | pdxB ← | erythronate‑4‑phosphate dehydrogenase |
| RA | 2,450,332 | G→T | 8.5% | P86Q (CCG→CAG) | yfcP ← | putative fimbrial‑like adhesin protein |
| RA | 2,595,919 | C→T | 6.0% | D273N (GAC→AAC) | ypfJ ← | putative neutral zinc metallopeptidase |
| RA | 2,773,068 | A→G | 8.3% | pseudogene (113/117 nt) | yfjV ← | pseudogene, CP4‑57 prophage,Phage or Prophage Related, putative pump protein |
| RA | 2,794,084 | T→G | 4.1% | intergenic (+71/‑167) | gabT → / → gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter |
| RA | 2,853,437 | T→A | 5.3% | I62I (ATT→ATA) | hypE → | carbamoyl dehydratase, hydrogenases 1,2,3 maturation protein |
| RA | 2,911,877:1 | +A | 7.3% | coding (1773/2235 nt) | relA ← | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| RA | 2,936,764 | Δ1 bp | 4.9% | coding (1183/1776 nt) | fucI → | L‑fucose isomerase |
| RA | 3,209,207 | Δ1 bp | 7.0% | coding (1186/1464 nt) | ttdT → | L‑tartrate/succinate antiporte |
| RA | 3,345,651:1 | +G | 4.9% | coding (937/1434 nt) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,829,794 | A→G | 6.0% | E284G (GAA→GGA) | xanP → | xanthine permease |
| RA | 3,850,849 | A→G | 6.4% | N81N (AAT→AAC) | ilvN ← | acetolactate synthase 1 small subunit |
| RA | 3,899,744 | A→G | 7.3% | L278P (CTT→CCT) | yieL ← | putative xylanase |
| RA | 3,950,341 | Δ1 bp | 100% | coding (21/99 nt) | ilvL → | ilvG operon leader peptide |
| MC JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,084,688 | G→A | 4.9% | N378N (AAC→AAT) | fdoG ← | formate dehydrogenase‑O, large subunit |
| RA | 4,094,414 | T→G | 15.2% | intergenic (‑143/+308) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,244,372:1 | +C | 5.6% | coding (703/1545 nt) | malF ← | maltose transporter subunit |
| RA | 4,296,189 | A→G | 20.0% | intergenic (+396/+248) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,190 | A→C | 25.7% | intergenic (+397/+247) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,325,949 | A→G | 10.4% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,397,834 | T→C | 5.8% | V141A (GTG→GCG) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,403,474 | C→T | 6.3% | F58F (TTC→TTT) | hflC → | HflB protease modulator specific for phage lambda cII repressor |
| RA | 4,448,928 | Δ1 bp | 7.8% | coding (236/351 nt) | chpB → | toxin of the ChpB‑ChpS toxin‑antitoxin system |
| RA | 4,466,839 | G→C | 6.9% | H137D (CAC→GAC) | treR ← | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
| RA | 4,557,376 | A→T | 8.0% | N128I (AAT→ATT) | iraD → | RpoS stabilzer after DNA damage, anti‑RssB factor |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2099735 | 2101382 | 1648 | 13 [11] | [11] 15 | gnd | gnd |
| * | * | ÷ | NC_000913 | 3769582 | 3769903 | 322 | 12 [10] | [11] 12 | [yibV]–yibV | [yibV], yibV |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 93647 = | 68 (1.350) | 4 (0.080) | 4/474 | NT | 5.9% | coding (482/1488 nt) | murE | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase |
| ? | NC_000913 | 93928 = | 62 (1.270) | coding (763/1488 nt) | murE | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 31 (0.610) | 28/488 | NT | 100% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 0 (0.000) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | = 274456 | NA (NA) | 4 (0.080) | 3/470 | NT | NA | coding (662/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | = 274878 | NA (NA) | coding (240/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | 315401 = | NA (NA) | 13 (0.270) | 9/462 | NT | NA | coding (111/300 nt) | insE1 | IS3 transposase A |
| ? | NC_000913 | 315627 = | NA (NA) | coding (41/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | NC_000913 | = 315804 | NA (NA) | 5 (0.100) | 4/476 | NT | NA | coding (218/867 nt) | insF1 | IS3 transposase B |
| ? | NC_000913 | = 315887 | NA (NA) | coding (301/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | NC_000913 | 374922 = | NA (NA) | 6 (0.120) | 4/472 | NT | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| ? | NC_000913 | 377329 = | NA (NA) | intergenic (+18/+206) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase | |||||
| * | ? | NC_000913 | = 381473 | 9 (0.180) | 10 (0.210) | 5/466 | NT | 53.8% | coding (123/366 nt) | insC1 | IS2 repressor TnpA |
| ? | NC_000913 | = 381839 | NA (NA) | coding (166/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913 | 387750 = | 55 (1.090) | 4 (0.080) | 4/470 | NT | 7.6% | coding (780/828 nt) | tauC | taurine ABC transporter permease |
| ? | NC_000913 | 387973 = | 44 (0.910) | coding (179/852 nt) | tauD | taurine dioxygenase, 2‑oxoglutarate‑dependent | |||||
| * | ? | NC_000913 | = 605962 | 43 (0.850) | 4 (0.080) | 4/476 | NT | 6.0% | coding (238/249 nt) | ybdJ | DUF1158 family putative inner membrane protein |
| ? | NC_000913 | = 606372 | 83 (1.690) | coding (1012/1119 nt) | ybdK | weak gamma‑glutamyl:cysteine ligase | |||||
| * | ? | NC_000913 | 631552 = | 62 (1.230) | 4 (0.080) | 4/478 | NT | 6.5% | coding (1659/2106 nt) | cstA | carbon starvation protein involved in peptide utilization, APC peptide transporter family protein |
| ? | NC_000913 | 631690 = | 55 (1.110) | coding (1797/2106 nt) | cstA | carbon starvation protein involved in peptide utilization, APC peptide transporter family protein | |||||
| * | ? | NC_000913 | 729672 = | 63 (1.250) | 8 (0.170) | 6/466 | NT | 11.7% | coding (90/4194 nt) | rhsC | Rhs protein with putative toxin domain, putative neighboring cell growth inhibitor |
| ? | NC_000913 | 729853 = | NA (NA) | coding (271/4194 nt) | rhsC | Rhs protein with putative toxin domain, putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 762116 = | 71 (1.410) | 8 (0.170) | 6/460 | NT | 9.3% | coding (595/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913 | 762340 = | 90 (1.890) | coding (819/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913 | = 1083742 | 56 (1.110) | 4 (0.080) | 4/476 | NT | 6.7% | coding (367/1272 nt) | efeB | deferrrochelatase, periplasmic |
| ? | NC_000913 | = 1084288 | 56 (1.140) | coding (913/1272 nt) | efeB | deferrrochelatase, periplasmic | |||||
| * | ? | NC_000913 | 1207790 = | 28 (0.550) | 28 (0.590) | 23/456 | NT | 53.3% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 23 (0.490) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 30 (0.590) | 31 (0.660) | 30/456 | NT | 54.9% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 23 (0.490) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1251175 = | 42 (0.830) | 4 (0.080) | 4/472 | NT | 8.0% | coding (110/1920 nt) | dhaR | dhaKLM operon transcription activator |
| ? | NC_000913 | 1251499 = | 51 (1.050) | coding (434/1920 nt) | dhaR | dhaKLM operon transcription activator | |||||
| * | ? | NC_000913 | 1264027 = | 51 (1.010) | 4 (0.080) | 4/472 | NT | 8.0% | coding (314/1257 nt) | hemA | glutamyl tRNA reductase |
| ? | NC_000913 | 1264913 = | 43 (0.880) | coding (1200/1257 nt) | hemA | glutamyl tRNA reductase | |||||
| * | ? | NC_000913 | 1293032 = | 0 (0.000) | 37 (0.730) | 32/488 | NT | 100% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1321172 | 40 (0.790) | 3 (0.060) | 3/466 | NT | 4.6% | coding (213/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| ? | NC_000913 | = 1321496 | 86 (1.790) | coding (1451/1563 nt) | trpE | component I of anthranilate synthase | |||||
| * | ? | NC_000913 | 1441369 = | 50 (0.990) | 4 (0.080) | 4/476 | NT | 9.1% | coding (375/423 nt) | hslJ | heat‑inducible lipoprotein involved in novobiocin resistance |
| ? | NC_000913 | 1441668 = | 31 (0.630) | coding (76/423 nt) | hslJ | heat‑inducible lipoprotein involved in novobiocin resistance | |||||
| * | ? | NC_000913 | 1525564 = | 54 (1.070) | 5 (0.100) | 5/476 | NT | 9.7% | coding (417/1500 nt) | ansP | L‑asparagine transporter |
| ? | NC_000913 | 1525939 = | 40 (0.810) | coding (42/1500 nt) | ansP | L‑asparagine transporter | |||||
| * | ? | NC_000913 | = 1621986 | 48 (0.950) | 4 (0.080) | 4/474 | NT | 7.5% | coding (655/1188 nt) | ydeE | putative transporter |
| ? | NC_000913 | = 1622325 | 52 (1.060) | coding (994/1188 nt) | ydeE | putative transporter | |||||
| * | ? | NC_000913 | = 1685320 | 61 (1.210) | 6 (0.120) | 6/472 | NT | 10.3% | coding (1269/1404 nt) | fumC | fumarate hydratase (fumarase C),aerobic Class II |
| ? | NC_000913 | = 1685547 | 46 (0.940) | coding (1042/1404 nt) | fumC | fumarate hydratase (fumarase C),aerobic Class II | |||||
| * | ? | NC_000913 | = 1821687 | 34 (0.670) | 4 (0.080) | 4/470 | NT | 9.3% | intergenic (‑68/+231) | chbB/osmE | N,N'‑diacetylchitobiose‑specific enzyme IIB component of PTS/osmotically‑inducible lipoprotein |
| ? | NC_000913 | = 1822063 | 45 (0.930) | coding (194/339 nt) | osmE | osmotically‑inducible lipoprotein | |||||
| * | ? | NC_000913 | 1889160 = | 86 (1.700) | 4 (0.080) | 4/474 | NT | 5.6% | coding (587/1686 nt) | fadD | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| ? | NC_000913 | 1889488 = | 52 (1.060) | coding (259/1686 nt) | fadD | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 22 (0.440) | 15/488 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 45 (0.890) | 39/488 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | = 2008566 | 62 (1.230) | 4 (0.080) | 4/474 | NT | 6.2% | coding (290/1206 nt) | yedE | UPF0394 family sulphur transport domain‑containing inner membrane protein |
| ? | NC_000913 | = 2008914 | 60 (1.220) | coding (638/1206 nt) | yedE | UPF0394 family sulphur transport domain‑containing inner membrane protein | |||||
| * | ? | NC_000913 | 2179968 = | 52 (1.030) | 5 (0.100) | 5/466 | NT | 9.8% | coding (1150/1278 nt) | yegT | nucleoside transporter, low affinity |
| ? | NC_000913 | 2180267 = | 42 (0.870) | coding (175/1005 nt) | yegU | ADP‑ribosylglycohydrolase family protein | |||||
| * | ? | NC_000913 | 2288917 = | NA (NA) | 4 (0.080) | 4/488 | NT | 10.3% | intergenic (‑5/+146) | yejO/insH1 | pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system/IS5 transposase and trans‑activator |
| ? | NC_000913 | = 3968902 | 35 (0.690) | coding (988/1104 nt) | wecA | UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase | |||||
| * | ? | NC_000913 | 2309318 = | 56 (1.110) | 3 (0.060) | 3/466 | NT | 5.2% | coding (22/651 nt) | alkB | oxidative demethylase of N1‑methyladenine or N3‑methylcytosine DNA lesions |
| ? | NC_000913 | 2309517 = | 56 (1.160) | coding (887/1065 nt) | ada | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase | |||||
| * | ? | NC_000913 | 2326541 = | 42 (0.830) | 3 (0.060) | 3/466 | NT | 6.7% | coding (435/1185 nt) | atoB | acetyl‑CoA acetyltransferase |
| ? | NC_000913 | 2327146 = | 44 (0.910) | coding (1040/1185 nt) | atoB | acetyl‑CoA acetyltransferase | |||||
| * | ? | NC_000913 | 2487643 = | 58 (1.150) | 4 (0.080) | 4/478 | NT | 6.8% | coding (3272/3594 nt) | evgS | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| ? | NC_000913 | 2487737 = | 52 (1.050) | coding (3366/3594 nt) | evgS | hybrid sensory histidine kinase in two‑component regulatory system with EvgA | |||||
| * | ? | NC_000913 | = 2531963 | 36 (0.710) | 4 (0.080) | 3/468 | NT | 5.9% | coding (503/762 nt) | cysZ | sulfate transporter, sulfite inhibited |
| ? | NC_000913 | = 2532165 | 92 (1.900) | coding (705/762 nt) | cysZ | sulfate transporter, sulfite inhibited | |||||
| * | ? | NC_000913 | = 2828439 | 52 (1.030) | 3 (0.060) | 3/474 | NT | 6.4% | coding (705/780 nt) | srlD | sorbitol‑6‑phosphate dehydrogenase |
| ? | NC_000913 | = 2828801 | 37 (0.760) | coding (183/360 nt) | srlM | sorbitol=responsive srl operon transcriptional activator | |||||
| * | ? | NC_000913 | 2895859 = | 52 (1.030) | 4 (0.080) | 4/480 | NT | 7.8% | coding (695/780 nt) | ygcR | putative flavoprotein |
| ? | NC_000913 | 2897816 = | 44 (0.890) | coding (53/1338 nt) | ygcS | putative MFS sugar transporter, membrane protein | |||||
| * | ? | NC_000913 | = 3135411 | 54 (1.070) | 5 (0.100) | 4/470 | NT | 9.4% | coding (959/1500 nt) | pitB | phosphate transporter |
| ? | NC_000913 | = 3135484 | 44 (0.910) | coding (886/1500 nt) | pitB | phosphate transporter | |||||
| * | ? | NC_000913 | = 3144478 | 61 (1.210) | 3 (0.060) | 3/464 | NT | 5.5% | coding (661/987 nt) | hybA | hydrogenase 2 4Fe‑4S ferredoxin‑type component |
| ? | NC_000913 | = 3144981 | 45 (0.940) | coding (158/987 nt) | hybA | hydrogenase 2 4Fe‑4S ferredoxin‑type component | |||||
| * | ? | NC_000913 | = 3170751 | 58 (1.150) | 5 (0.100) | 3/470 | NT | 8.0% | coding (270/1350 nt) | qseC | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB |
| ? | NC_000913 | = 3170892 | 59 (1.210) | coding (411/1350 nt) | qseC | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB | |||||
| * | ? | NC_000913 | = 3220244 | 58 (1.150) | 3 (0.060) | 3/468 | NT | 4.6% | coding (753/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| ? | NC_000913 | = 3220396 | 70 (1.450) | coding (905/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | 3386473 = | 65 (1.290) | 5 (0.100) | 5/470 | NT | 8.1% | coding (1714/1968 nt) | aaeB | p‑hydroxybenzoic acid efflux system component |
| ? | NC_000913 | 3386685 = | 51 (1.050) | coding (1502/1968 nt) | aaeB | p‑hydroxybenzoic acid efflux system component | |||||
| * | ? | NC_000913 | = 3511659 | 58 (1.150) | 3 (0.060) | 3/480 | NT | 4.7% | coding (684/906 nt) | yhfZ | putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 3511831 | 65 (1.310) | coding (512/906 nt) | yhfZ | putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | = 3583543 | 12 (0.240) | 4 (0.080) | 4/482 | NT | 32.2% | coding (62/276 nt) | insA | IS1 repressor TnpA |
| ? | NC_000913 | = 3583629 | 5 (0.100) | coding (148/276 nt) | insA | IS1 repressor TnpA | |||||
| * | ? | NC_000913 | 3620749 = | NA (NA) | 3 (0.060) | 3/484 | NT | 5.2% | coding (1559/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3621164 = | 55 (1.090) | coding (1974/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3674138 | 56 (1.110) | 4 (0.080) | 4/468 | NT | 7.6% | coding (778/1014 nt) | yhjD | inner membrane putative BrbK family alternate lipid exporter |
| ? | NC_000913 | = 3674302 | 44 (0.910) | coding (942/1014 nt) | yhjD | inner membrane putative BrbK family alternate lipid exporter | |||||
| * | ? | NC_000913 | = 3826384 | 63 (1.250) | 3 (0.060) | 3/468 | NT | 4.4% | coding (1176/2082 nt) | recG | ATP‑dependent DNA helicase |
| ? | NC_000913 | = 3826562 | 69 (1.430) | coding (1354/2082 nt) | recG | ATP‑dependent DNA helicase | |||||
| * | ? | NC_000913 | = 3873444 | 50 (0.990) | 4 (0.080) | 4/466 | NT | 6.6% | coding (168/618 nt) | dgoA | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| ? | NC_000913 | = 3873719 | 65 (1.350) | coding (755/879 nt) | dgoK | 2‑oxo‑3‑deoxygalactonate kinase | |||||
| * | ? | NC_000913 | = 3927992 | 60 (1.190) | 3 (0.060) | 3/474 | NT | 5.1% | coding (839/993 nt) | asnA | asparagine synthetase A |
| ? | NC_000913 | = 3928224 | 53 (1.080) | coding (1379/1452 nt) | viaA | stimulator of RavA ATPase activity, von Willebrand factor domain protein | |||||
| * | ? | NC_000913 | = 4125445 | 55 (1.090) | 4 (0.080) | 3/464 | NT | 6.7% | coding (1365/2199 nt) | priA | Primosome factor n' (replication factor Y) |
| ? | NC_000913 | = 4125677 | 59 (1.230) | coding (1133/2199 nt) | priA | Primosome factor n' (replication factor Y) | |||||
| * | ? | NC_000913 | = 4263954 | 62 (1.230) | 5 (0.100) | 5/480 | NT | 7.7% | coding (277/984 nt) | qorA | quinone oxidoreductase, NADPH‑dependent |
| ? | NC_000913 | = 4264426 | 59 (1.190) | coding (114/1416 nt) | dnaB | replicative DNA helicase | |||||
| * | ? | NC_000913 | = 4279167 | 78 (1.550) | 4 (0.080) | 4/468 | NT | 5.3% | coding (690/1350 nt) | ghxP | guanine/hypoxanthine permease, high affinity, guanine/hypoxanthine:H+ symporter |
| ? | NC_000913 | = 4280190 | 69 (1.430) | coding (212/1650 nt) | yjcE | putative cation/proton antiporter | |||||
| * | ? | NC_000913 | = 4349623 | 77 (1.530) | 5 (0.100) | 4/472 | NT | 7.4% | coding (413/720 nt) | dcuR | response regulator in two‑component regulatory system with DcuS |
| ? | NC_000913 | = 4349718 | 51 (1.050) | coding (318/720 nt) | dcuR | response regulator in two‑component regulatory system with DcuS | |||||
| * | ? | NC_000913 | 4410257 = | 46 (0.910) | 4 (0.080) | 4/470 | NT | 9.8% | coding (124/402 nt) | yjfI | DUF2170 family protein |
| ? | NC_000913 | 4410528 = | 29 (0.600) | coding (395/402 nt) | yjfI | DUF2170 family protein | |||||