mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 87 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 202,496 | 0 | A | . | 73.6% | 391.5 / inf | 295 | intergenic (+274/‑401) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 311,148 | 1 | . | T | 72.2% | 501.9 / 297.7 | 334 | intergenic (‑71/‑243) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| * | CP016816 | 311,148 | 2 | . | A | 67.8% | 626.9 / inf | 334 | intergenic (‑71/‑243) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| * | CP016816 | 437,881 | 0 | A | . | 64.8% | 868.8 / inf | 902 | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 34,946 | 0 | A | . | 63.6% | inf / inf | 1931 | intergenic (+50/+116) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| * | CP016816 | 203,895 | 1 | . | T | 61.1% | 1427.9 / inf | 711 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 437,882 | 0 | T | . | 60.9% | 518.0 / inf | 902 | intergenic (‑186/+236) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 165,250 | 0 | T | . | 59.8% | 479.7 / inf | 1283 | intergenic (+214/‑328) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 311,148 | 3 | . | T | 57.2% | 469.6 / inf | 334 | intergenic (‑71/‑243) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| * | CP016816 | 311,148 | 4 | . | A | 57.2% | inf / inf | 334 | intergenic (‑71/‑243) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| * | CP016816 | 202,487 | 0 | T | . | 55.1% | 315.5 / inf | 481 | intergenic (+265/‑410) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 105,339 | 0 | T | G | 54.4% | 1089.5 / inf | 1142 | intergenic (+834/+92) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 87,917 | 1 | . | T | 54.2% | inf / inf | 1748 | intergenic (+44/‑816) | JCVSYN2_00345/JCVSYN2_00350 | hypothetical protein/50S ribosomal protein L31 |
| * | CP016816 | 202,485 | 0 | T | . | 51.9% | 370.4 / inf | 479 | intergenic (+263/‑412) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,488 | 0 | T | . | 50.2% | 490.3 / inf | 471 | intergenic (+266/‑409) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,489 | 0 | A | . | 49.0% | 486.1 / inf | 473 | intergenic (+267/‑408) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,497 | 0 | A | T | 48.1% | 73.8 / 155.0 | 293 | intergenic (+275/‑400) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 87,904 | 0 | T | . | 45.3% | 566.6 / inf | 362 | intergenic (+31/‑829) | JCVSYN2_00345/JCVSYN2_00350 | hypothetical protein/50S ribosomal protein L31 |
| * | CP016816 | 202,486 | 0 | T | . | 44.2% | 586.7 / inf | 478 | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 420,253 | 0 | C | A | 43.5% | 1331.1 / inf | 1493 | intergenic (‑536/+307) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| Marginal new junction evidence (lowest skew 10 of 155 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | = 311148 | 132 (0.080) | 594 (0.300) +TATATA |
115/188 | 16.0 | 77.4% | intergenic (‑71/‑243) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | 311149 = | 198 (0.090) | intergenic (‑72/‑242) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||
| * | ? | CP016816 | 437885 = | 1089 (0.520) | 300 (0.180) | 121/204 | 17.3 | 26.8% | intergenic (‑189/+233) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437880 | 757 (0.440) | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | = 311148 | 137 (0.080) | 551 (0.270) +TATA |
111/192 | 17.8 | 75.2% | intergenic (‑71/‑243) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | 311149 = | 203 (0.100) | intergenic (‑72/‑242) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||
| * | ? | CP016816 | 311149 = | 351 (0.170) | 590 (0.330) | 123/212 | 18.1 | 69.6% | intergenic (‑72/‑242) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | = 311154 | 220 (0.120) | intergenic (‑77/‑237) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||
| * | ? | CP016816 | 34949 = | 2119 (1.010) | 215 (0.110) | 118/228 | 21.9 | 10.3% | intergenic (+53/+113) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| ? | CP016816 | = 34945 | 1818 (0.950) | intergenic (+49/+117) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH | |||||
| * | ? | CP016816 | = 202486 | 194 (0.090) | 427 (0.200) | 110/252 | 27.4 | 68.0% | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| ? | CP016816 | 202490 = | 207 (0.100) | intergenic (+268/‑407) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein | |||||
| * | ? | CP016816 | = 203895 | 518 (0.280) | 288 (0.140) +TTT |
90/214 | 27.6 | 33.6% | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| ? | CP016816 | 203896 = | 573 (0.270) | intergenic (+280/+178) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase | |||||
| * | ? | CP016816 | 165253 = | 1435 (0.680) | 203 (0.110) | 93/220 | 27.6 | 14.3% | intergenic (+217/‑325) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | = 165249 | 1171 (0.640) | intergenic (+213/‑329) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | 311149 = | 390 (0.180) | 539 (0.300) | 88/216 | 28.5 | 64.1% | intergenic (‑72/‑242) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | = 311156 | 269 (0.150) | intergenic (‑79/‑235) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||
| * | ? | CP016816 | 437887 = | 1171 (0.560) | 234 (0.130) | 56/208 | 38.3 | 20.4% | intergenic (‑191/+231) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437880 | 854 (0.490) | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||